SATTA Y, ZHENG W, NISHIYAMA KV, IWASAKI RL, HAYAKAWA T, FUJITO NT, TAKAHATA N. 2000
Two-dimensional site frequency spectrum for detecting, classifying and dating incomplete selective sweeps. Genes Genet Syst 30;94(6):283-300.
SATTA Y, TAKAHATA N. 2000
Population genomics on the origin of lactase persistence in Europe and South Asia. BioRxiv. Archivo (in press)
KOMATSU T, SHIMIZU T, KANOH M, MIYOKAWA T, SATTA Y, YASUKOCHI Y, FUJIMOTO R, TADA M, MACHIDA K, KATAOKA S, UDAKA K. 2020
Development of a novel monoclonal antibody that binds to most HLA-A allomorphs in a conformation-dependent yet peptide-promiscuous fashion. Immunogenetics 72(3):143-153.
Kono M, Kon Y, Omura Y, Satta Y, Terai Y, (2020)
In vitro resynthesis of lichenization reveals the genetic background of symbiosis-specific fungal-algal interaction in Usnea hakonensis. BMC Genomics 21, 671.
Nishiyama KV, Satta Y, Gojobori J, (2020)
Do Genes Associated with Dyslexia of Chinese Characters Evolve Neutrally? Genes 2020, 11(6), 658.
Iwasaki RL, Ishiya K, Kanzawa-Kiriyama H , Kawai Y, Gojobor Ji, Satta Y, (2020)
Evolutionary History of the Risk of SNPs for Diffuse-Type Gastric Cancer in the Japanese Population. Genes 2020, 11(7), 775.
Lau Q, Igawa T, Ogino H, Katsura Y, Ikemura T, Satta Y, (2020)
Heterogeneity of synonymous substitution rates in the Xenopus frog genome. PLoS ONE 15(8): e023651
Lo YH, Cheng HC, Hsiung CN, Yang SL, Wang HY, Peng CW, Chen CY, Lin KP, Kang ML, Chen CH, Chu HW, LIn CF, Lee MH, Lau Q, Satta Y, Lin CJ, Lin M, Chaw SM, Loo JH, Shen CY, Ko WY, (2020)
Detecting genetic ancestry and adaptation in the Taiwanese Han people. Molecular Biology and Evolution, msaa276.
Seiko T, Kishida T, Toyama M, Hariyama T, Okitsu T, Wada A, Toda M, Satta Y, Terai Y (2020)
Visual adaptation of opsin genes to the aquatic environment in sea snakes. BMC Evolutionary Biology 20 (1), 158.
Lau Q, Igawa T, Komaki S, Satta Y. (2020)
Expression Changes of MHC and Other Immune Genes in Frog Skin during Ontogeny. Animals (Basel). 2020 Jan 6;10(1):91
ARAKAWA N, UTSUMI D, TAKAHASHI K, MATSUMOTO-ODA A, NYACHIEO A, CHAI DC, JILLANI N, IMAI H, SATTA Y, TERAI Y. 2019
Expression changes of structural protein genes may be related to adaptive skin characteristics specific to humans. Genome Biol Evol. 2019 Jan 18.
FUJITO NT, SATTA Y, HAYAKAWA T, TAKAHATA N. 2018
A new inference method for detecting an ongoing selective sweep. Genes Genet Syst. 10;93(4):149-161
ZHENG, W., SATTA, Y. 2018
Functional Evolution of Avian RIG-I-Like Receptors. Genes (Basel). 12;9(9)
FUJITO, NT., SATTA, Y., HANE, M., MATSUI, A., YASHIMA, K., KITAJIMA, K., SATO, C., TAKAHATA, N., HAYAKAWA, T. 2018
Positive selection on schizophrenia-associated ST8SIA2 gene in post-glacial Asia. PLoS ONE 13(7):e0200278
LAU, Q., IGAWA, T., KOSCH, T.A., SATTA, Y. 2018
Selective constraint acting on TLR2 and TLR4 genes of Japanese Rana frogs. PeerJ 6:e4842
SATTA Y., FUJITO NT., TAKAHATA N. 2018
Non-equilibrium neutral theory for hitchhikers. MBE msy093.
KATSURA Y., KONDO HKX., RYAN J., HARLEY V., SATTA Y. 2018
The evolutionary process of mammalian sex determination genes focusing on marsupial SRYs. BMC Evol Biol 18:3
SAITOU M, SATTA Y, GOKCUMEN O, ISHIDA T. 2018
Complex evolution of the GSTM gene family involves sharing of GSTM1 deletion polymorphism in humans and chimpanzees. BMC Genomics. 2018 Apr 25;19(1):293
SAITOU M, SATTA Y, GOKCUMEN O. 2018
Complex Haplotypes of GSTM1 Gene Deletions Harbor Signatures of a Selective Sweep in East Asian Populations. G3 (Bethesda). 2018 Aug 30;8(9)
DHARMAYANTHI AB., TERAI Y., SULANDARI S., ZEIN MSA., AKIYAMA T., SATTA Y. 2017
KONO M., TANABE H., OHMURA Y., SATTA Y., TERAI Y. 2017.
Physical contact and carbon transfer between a lichen-forming Trebouxia alga and a novel Alphaproteobacterium. Microbiology (United Kingdom) 163:678-691
LAU, Q., IGAWA, T., MINEI, R., KOSCH, TA., AND SATTA, Y. 2017
Transcriptome analyses of immune tissues from three Japanese frogs (genus Rana) reveals their utility in characterizing major histocompatibility complex class II. BMC Genomics 18(1)
AKIYAMA T., KATSUMURA T., NAKAGOME S., LEE S IL., JOH K., SOEJIMA H., FUJIMOTO K., KIMURA R., ISHIDA H., HANIHARA T., YASUKOUCHI A., SATTA Y., HIGUCHI S., OOTA H. 2017.
An ancestral haplotype of the human PERIOD2 gene associates with reduced sensitivity to light-induced melatonin suppression PLoS ONE 12
SAITO S., HAMANAKA G., KAWAI N., FURUKAWA R., GOJOBORI J., TOMINAGA M., KANEKO H., SATTA Y. 2017
Characterization of TRPA channels in the starfish Patiria pectinifera: Involvement of thermally activated TRPA1 in thermotaxis in marine planktonic larvae. Scientific Reports 7
TAKAHASHI-KARIYAZONO S., GOJOBORI J., SATTA Y., SAKAI K., TERAI Y. 2016
Acropora digitifera encodes the largest known family of fluorescent proteins that has persisted during the evolution of Acropora Species. Genome Biology and Evolution 8:3271-3283
SHIGENO-NAKAZAWA Y., KASAI T., KI S., KOSTYANOVSKAYA E., PAWLAK J., YAMAGISHI J., OKIMOTO N., TAIJI M., OKADA M., WESTBROOK J., SATTA Y., KIGAWA T., IMAMOTO A. 2016
A pre-metazoan origin of the CRK gene family and co-opted signaling network.Scientific Reports 6
EIMES JA., LEE SI., TOWNSEND AK., JABLONSKI P., NISHIUMI I., SATTA Y. 2016.
Early duplication of a single MHC IIB locus prior to the passerine radiations.PLoS ONE 12
LAU Q., IGAWA T., KOMAKI S., SATTA Y. 2016
Characterisation of major histocompatibility complex class I genes in Japanese Ranidae frogs. Immunogenetics 68:797-806
LAU Q., YASUKOCHI Y., SATTA Y. 2015
A limit to the divergent allele advantage model supported by variable pathogen recognition across HLA-DRB1 allele lineages. Tissue Antigens 86:343-352
SUZUKI-HASHIDO N., HAYAKAWA T., MATSUI A., GO Y., ISHIMARU Y., MISAKA T., ABE K., HIRAI H., SATTA Y., IMAI H. 2015.
Rapid expansion of phenylthiocarbamide non-tasters among Japanese macaques. PLoS ONE 10
TAKAHASHI-KARIYAZONO S., SATTA Y., TERAI Y. 2015
Genetic diversity of fluorescent protein genes generated by gene duplication and alternative splicing in reef-building corals. Zoological letters 1:23
YASUKOCHI Y., SATTA Y. 2015
Molecular evolution of the CYP2D subfamily in primates: Purifying selection on substrate recognition sites without the frequent or long-tract gene conversion. Genome Biology and Evolution 7:1053-1067
EIMES J A., TOWNSEND AK., SEPIL I., NISHIUMI I., SATTA Y. 2015
Patterns of evolution of MHC class II genes of crows (Corvus) suggest trans-species polymorphism. PeerJ 3:e853
KUSANO S., KUKIMOTO-NIINO M., SATTA Y., OHSAWA N., UCHIKUBO-KAMO T., WAKIYAMA M., IKEDA M., TERADA T., YAMAMOTO K., NISHIMURA Y., SHIROUZU M., SASAZUKI T., YOKOYAMA S. 2014.
Structural basis for the specific recognition of the major antigenic peptide from the Japanese cedar pollen allergen Cry j 1 by HLA-DP5. Journal of Molecular Biology 426:3016-3027
KAWASHIMA A., SATTA Y. 2014
YASUKOCHI Y., SATTA Y. 2014
A human-specific allelic group of the MHC DRB1 gene in primates. Journal of physiological anthropology 33:14
YASUKOCHI Y., SATTA Y. 2014
Nonsynonymous substitution rate heterogeneity in the peptide-binding region among different HLA-DRB1 lineages in humans. G3 4:1217-1226
NIKAIDO M., OTA T., HIRATA T., SUZUKI H., SATTA Y., AIBARA M., MZIGHANI SI., STURMBAUER C., HAGINO-YAMAGISHI K., OKADA N. 2014
Multiple episodic evolution events in v1r receptor genes of East-African cichlids. Genome Biology and Evolution 6:1135-1144
NISHIMOTO, M., M. KATANO, T. YAMAGISHI, T. HISHIDA, M. KAMON, A.SUZUKI, M. HIRASAKI, Y. NABESHIMA, Y. KATSURA, Y. SATTA, J. E. DEAKIN, J. A. M. GRAVES, Y. KUROKI, R. ONO, F. ISHINO, M. EMA, S. TAKAHASHI, H. KATO, and A. OKUDA, 2013
In vivo function and evolution of the eutherian-specific pluripotency marker UTF1. PLoS ONE 8(7): e68119
SATTA, Y., 2013
Gene Conversion During Primate Evolution. eLS
YASUKOCHI, Y., and Y. SATTA, 2013
Current perspectives on the intensity of natural selection of MHC loci. Immunogenetics 65(6): 479-483
YASUKOCHI, Y., T. KUROSAKI, M. YONEDA, H. KOIKE, and Y. SATTA, 2012
MHC class II DQB diversity in the Japanese black bear, Ursus thibetanus japonicus. BMC Evol Biol 12(1): 230
KATSURA Y., and Y. SATTA, 2012
No evidence for a second evolutionary stratum during the early evolution of mammalian sex chromosomes. PLoS One 7(10): e45488
HARA Y., T. IMANISHI and Y. SATTA, 2012
Reconstructing the demographic history of the human lineage using whole-genome sequences from human and three great apes. Genome Biol Evol 4(11):1133-45
KATSURA, Y., M. IWASE, and Y. SATTA, 2012
Evolution of genomic structures on mammalian sex chromosomes. Curr Genom 13(2): 115-123
SATTA, Y., 2012
Post-Genome Biology of Primates,Primatology Monographs (H.Hirai et al. (eds.))
Chapter 10: Genome Structure and Primate Evolution, Tokyo: Springer: 163-173
KIM H. L., M. IWASE, T. IGAWA, T. NISHIOKA, S. KANEKO, Y. KATSURA, N. TAKAHATA and Y. SATTA, 2012
Genomic structure and evolution of multigene families: [flowers] on the human genome. Int J Evol Biol ID 917678
KATSURA, Y., and Y. SATTA, 2011
Evolutionary History of the Cancer Immunity Antigen MAGE Gene Family. PloS One 6(6):e20365. Epub 2011 Jun 10.
YASUKOCHI, Y., and Y. SATTA, 2011
Evolution of the CYP2D gene cluster in humans and four non-human primates. Genes Gent Syst 86(2):109-116
MONTANO, A.M., F. TSUJINO, N. TAKAHATA, and Y. SATTA, 2011
Evolutionary origin of peptidoglycan recognition proteins in vertebrate innate immune system. BMC Evol Biol 11:79-88.
SATTA, Y., 2011
Primate Evolution: Gene Loss and Inactivation. In:ENCYCLOPEDIA OF LIFE SCIENCES 2011, John Wiley & Sons, Ltd: Chichester http://www.els.net/ [DOI: 10.1002/9780470015902.a0005121.pub2]
IWASE, M., Y. SATTA, H. HIRAI, Y. HIRAI, and N. TAKAHATA, 2010
Frequent gene conversion events between the X and Y homologous chromosomal regions in primates. BMC Evol Biol 10:225-235
SAWAI, H., H. L. KIM, K. KUNO, S, SUZUKI, H. GOTOH, M. TAKADA, Y. SATTA, N.TAKAHATA, and F. AKISHINONOMIYA, 2010
The origin and genetic variation of domestic chickens with special reference to junglefowls Gallus g. gallus and G. varius. PLoS ONE 5: e10639. doi:10.1371/journal.pone.0010639
KIM H. L., T. IGAWA, A. KAWASHIMA, Y. SATTA, and N. TAKAHATA, 2010
Divergence, demography and gene loss along the human lineage. Philos trans R Soc Lond Ser B 365:2451-2457.
GO Y. and Y. SATTA., 2009
Sensing an environment - evolution of biological sensors -(Iwamani, Scientific Library)
NAKAJIMA, T., H. OHTANI, Y. SATTA, Y. UNO H. AKARI, T. ISHIDA, and A. KIMURA, 2008
Natural selection in the TLR-related genes in the course of primate evolution. Immunogenetics 60(12):727-735. Epub 2008 Sep 23
TAKUNO, S., T. NISHIO, Y. SATTA and H. INNAN, 2008
Preservation of a Pseudogene by Gene Conversion and Diversifying Selection. Genetics 180: 517-531
SAWAI, H., Y. GO, and Y. SATTA, 2008
Biological implication for loss of function at Major Histocompatibility Complex loci. Immunogenetics 60: 295-302
NISHIOKA, T., M. KAMRUZZAMA, M. NISHIBUCHI, and Y. SATTA, 2008
On the origin and function of an insertion element VPaI-1 specific to post-1995 pandemic Vibrio parahaemolyticus strains. Genes Gent Syst 83: 101-110.
KIM, H. L., and Y. SATTA, 2008
Population genetic analysis of N-acylsphingosine amidohydrolase gene associated with mental activity in humans. Genetics 178:1505-1515
SATTA, Y., 2008
Gene conversion during primate evolution. Encyclopedia of Life Sciences http://www.els.net/ [DOI: 10.1002/9780470015902.a0020832]
SAMONTE, I. L., Y. SATTA, A. SATO, H. TICHY, N. TAKAHATA, and J. KLEIN, 2007
Gene flow between species of Lake Victoria haplochromine fishes. Mol Biol Evol 24: 2069-2080
IWASE, M., S. KANEKO, H. L. KIM, Y. SATTA, and N. TAKAHATA, 2007
Evolutionary history of sex-linked mammalian amelogenin genes. Cells Tissues Organs 186:49-59.
MASHIBA,T., K. UDAKA, Y. HIRACHI, Y. HIASA, T. MIYAKAWA, Y. SATTA, T. OSODA, S. KATAOKA, M. KOHARA, and M. ONJI, 2007
Identification of CTL epitopes in hepatitis C virus by a genome-wide computational scanning and a rational design of peptide vaccine. Immunogenetics 59: 197-209
BHOWMICK, B. K., Y. SATTA, and N. TAKAHATA, 2007
The origin and evolution of human ampliconic gene families and ampliconic structure. Genome Res 17: 441-450.