Microbial Metagenomics_Links

Here lists several common sources of microbial 16S rRNA genes, and basic bioinformatic programs.

Sources for microbial 16 rRNA genes

1. Ribosomal Database Project: RDP.

2. RDP pipeline:http://pyro.cme.msu.edu/.

3. Greengenes: http://greengenes.lbl.gov/cgi-bin/nph-index.cgi.

Basic bioinformatic programs:

1. Clustal Omega: http://www.ebi.ac.uk/Tools/msa/clustalo/.

2. The SEED: http://theseed.uchicago.edu/FIG/index.cgi.

3. Pfam: http://pfam.xfam.org/.

4. QIIME: http://qiime.org/tutorials/