Publications

Peer-reviewed Journal Papers:

• 1. Deep learning enables automatic correction of experimental HDX-MS data with applications in protein modelling, Ramin Ekhteiari Salmas and Antoni J. Borysik; 2024, JASMS. Doi: 10.1021/jasms.3c00285 (Link)

  2. Mapping HDX-MS Data to Protein Conformations Through Training Ensemble-Based Models, Ramin Ekhteiari Salmas, Matthew J. Harris and Antoni J. Borysik; 2023, JASMS. Doi: 10.1021/jasms.3c00145  (Link)

  3. Cholinesterase Inhibitory and In Silico Toxicity Assessment of Thirty-Four Isoquinoline Alkaloids – Berberine as the Lead Compound; F. Sezer Senol Deniz, Ramin Ekhteiari Salmas, Esra Emerce, Bilge Sener, Ilkay Erdogan Orhan; 2023; CNS & Neurological Disorders - Drug Targets. Doi: 10.2174/1871527322666230417083053  (Link)

  4. In vitro and In silico Cholinesterase Inhibitory and Antioxidant Effects of Essential Oils and Extracts of Two New Salvia fruticosa Mill. Cultivars (Turgut and Uysal) and GC-MS Analysis of the Essential Oils; Nurten Abacı Kaplan, Fatma Şenol Deniz, Ramin Ekhteiari Salmas, Fatma Uysal Bayar, Kenan Turgut, Ilkay Erdogan Orhan; International Journal of Environmental Health Research; 2023. Doi: 10.1080/09603123.2022.2163988. (Link)

  5. X-Ray Crystalographic Data, Absolute Configuration, and Anticholinesterase Effect of Dihydromyricitrin 3-O-rhamnoside; Mahmoud Fahmi Elsebai,  Hazem A. Ghabbour, Ramin Ekhteiari Salmas,  Ilkay Erdogan Orhan, Fatma Sezer Senol Deniz; Scientific Reports, 2022.  Doi: 10.1038/s41598-022-23240-7. (Link)

  6. Evaluation of anti-Alzheimer activity of synthetic coumarins by combination of in vitro and in silico approaches; Ilkay Erdogan Orhan, F. Sezer Senol Deniz, Ramin Ekhteiari Salmas, Sule Irmak, Ozden Ozgun  Acar, Gurbet Celik Turgut, Alaattin Sen, Ana-Maria Zbancioc, Simon Vlad Luca, Adrianna Skiba, Krystyna Skalicka-Woźniak, Gabriela Tataringa, Chemistry and Biodiversity, 2022,  Doi: 10.1002/cbdv.202200315. (Link)

  7. Exploiting the propagation of constrained variables for enhanced HDX-MS data optimisation; Ramin Ekhteiari Salmas and Antoni Borysik;  Anal. Chem.  ACS, 2021. Doi: 10.1021/acs.analchem.1c03082. (Link)

  8. Characterisation and management of noise in HDX-MS data modelling; Ramin Ekhteiari Salmas and Antoni Borysik;  Anal. Chem.  ACS, 2021. Doi: 10.1021/acs.analchem.1c00894. (Link)

  9. HDXmodeller: an online webserver for high-resolution HDX-MS with auto-validation; Ramin Ekhteiari Salmas and Antoni Borysik; Communications Biology - Nature, 2021. Doi: 10.1038/s42003-021-01709-x. (Link)

  10. Profiling the annual change of the neurobiological and antioxidant effects of five Origanum species in correlation with their phytochemical composition; Hasya Nazli Gok, Simon Vlad Luca, Saadet Tugrul Ay, Lukasz Komsta, Ramin Ekhteiari Salmas, Ilkay Erdogan Orhan, Krystyna Skalicka-Woźniak; Food Chemistry. Doi: 10.1016/ j.foodchem.2021.130775. (Link)

  11. 7-Acetoxyhorminone from Salvia multicaulis Vahl. as Promising Inhibitor of 3-Hydroxy-3-Methylglutaryl Coenzyme A (HMG-CoA) Reductase; Serkan Yigitkan, Abdulselam Ertas, Ramin Ekhteiari Salmas, Mehmet Fırat, Ilkay Erdogan Orhan; Pharmaceuticals, 2022. Doi: 10.3390/ph15020198. (Link)

  12. Evaluation of Collagenase, Elastase and Tyrosinase Inhibitory Activities of Cotinus coggygria Scop. Through In vitro and In silico Approaches, F. Sezer Senol, Ramin Ekhteiari Salmas, Esra Emerece, Iffet Irem Tatli Canakaya, Hasan Soliman Yusufoglu, Ilkay Erdogan Orhan. South African Journal of Botany. Doi: 10.1016/j.sajb.2020.05.017. (Link)

  13. Synthesis, Bioactivity and Binding Energy Calculations of Novel 3-Ethoxysalicylaldehyde Based Thiosemicarbazone Derivatives,  Muhammad Ishaq, Parham Taslimi, Samra Khan, Ramin Ekhteiari Salmas, Mohammad Mahdi Zangeneh, Akram Zangeneh, Aamer Saeed, Asnuzilawati Asari, Nastaran Sadeghian, and Zahid Shafiq; Bioorganic Chemistry. Doi: 10.1016/j.bioorg.2020.103924. (Link)

  14. Synthesis, Anticholinesterase Activity and Molecular Modeling Studies of Novel Carvacrol Substituted Amide Derivatives, Belma Zengin Kurt, Serdar Durdagi, Gulsen Celebi, Ramin Ekhteiari Salmas, Fatih Sonmez. Journal of Biomolecular Structure & Dynamics. 2019. Doi: 10.1080/07391102.2019.1590243. (Link)

  15. Combined Molecular Modeling and Cholinesterase Inhibition Studies on Some Natural and Semisynthetic O-Alkylcoumarin Derivatives, Ilkay Erdogan Orhan, F. Sezer Senol, Ramin Ekhteiari Salmas, Serdar Durdagi, Francesco Epifano, Salvatore Genovese, Serena Fiorito. Bioorg. Chem, 2018. Doi: 10.1016/j.bioorg.2018.11.044. (Link)

  16. Investigation of Molecular Mechanism of Staphylococcal DNA Gyrase Inhibitors: A Combined Ligand-based and Structure-based Resources Pipeline, Serdar Durdagi, Muhammad Tahir ul Qamar, Ramin Ekhteiari Salmas, Quratulain Tariq, Farooq Anwar, Usman Ali Ashfaq. Journal of Molecular Graphics and Modelling, 2018. Doi: /10.1016/j.jmgm.2018.07.010  (Link)

  17. Oligomerization and Cooperativity in GPCRs from the Perspective of the Angiotensin AT1 and Dopamine D2 Receptors. Serdar Durdagi, Ismail Erol, Ramin Ekhteiari Salmas, Busecan Aksoydan, Isik Kantarcioglu. Neuroscience Letters, 2018. Doi:  10.1016/j.neulet.2018.04.028 (Link)

  18. Amberboin and lipidiol: X-ray crystalographic data, absolute configuration and inhibition of cholinesterase, Mahmoud Fahmi Elsebai, Hazem A. Ghabbour, Amani M. Marzouk, Ramin Ekhteiari Salmas, Ilkay Erdogan Orhan, Fatma Sezer Senol. Phytochemistry Letters, 2018. Doi: 10.1016/j.phytol.2018.06.023. (Link)

  19. Structural Investigation of the Dopamine-2 Receptor Agonist Bromocriptine Binding to Dimeric D2HighR and D2LowR States. Ramin Ekhteiari Salmas, Philip Seeman, Matthias Stein, Serdar Durdagi. Journal of Chemical Information and Modeling, 2018. Doi: 10.1021/acs.jcim.7b00722 (Link)

  20. Combinatorial Peptide Library Screening for Discovery of Diverse α-glucosidase Inhibitors Using Molecular Dynamics Simulations and Binary QSAR Models. Adriano Mollica, Gokhan Zengin, Serdar Durdagi, Ramin Ekhteiari Salmas, Giorgia Macedonio, Azzurra Stefanucci, Marilisa Pia Dimmito, Ettore Novellino, Journal of Biomolecular Structure and Dynamics, 2018. Doi: 10.1080/07391102.2018.1439403. (Link)

  21. Molecular Modeling and In vitro Approaches Towards Cholinesterase Inhibitory Effect of Some Natural Xanthohumol, Naringenin, and Acyl Phloroglucinol Derivatives. Ilkay Erdogan Orhan, Dariusz Jedrejek, F. Sezer Senol, Ramin Ekhteiari Salmas, Serdar Durdagi, Iwona Kowalska, Lukasz Pecio, Wieslaw Oleszek; Phytomedicine 2018. Doi: 10.1016/j.phymed.2018.03.009. (Link)

  22. Integration of Multi-scale Molecular Modeling Approaches with Experiments for the in silico Guided Design and Discovery of Novel hERG-Neutral Antihypertensive Oxazalone and Imidazolone Derivatives and Analysis of Their Potential Restrictive Effects on Cell Proliferation; Serdar Durdagi, Busecan Aksoydan, Ismail Erol, Isik Kantarcioglu, Yavuz Ergun, Gulay Bulut, Melih Acar, Timucin Avsar, George Liapakis, Vlasios Karageorgos, Ramin Ekhteiari Salmas, Barış Sergi, Sara Alkhatib, Gizem Turan, Berfu Nur Yigit, Kutay Cantasir, Bahar Kurt, and Turker Kilic. European Journal of Medicinal Chemistry 2017. Doi: 10.1016/j.ejmech.2017.12.021 (Link)

  23. In vitro and in silico approaches to appraise Polygonum maritimum L. as a source of innovative products with anti-ageing potential, Maria João Rodrigues, Sylwester Slusarczyk, Łukasz Pecio, Adam Matowski, Ramin Ekhteiari Salmas, Serdar Durdagi, Catarina Pereira, João Varela, Luísa Barreira and Luísa Custódio; Industrial Crops and Products, 2017. Doi: 10.1016/j.indcrop.2017.10.046 (Link)

  24. The Synthesis of Novel Sulfamides Derived from beta-Benzylphenethylamines as Acetylcholinesterase, Butyrylcholinesterase and Carbonic Anhydrase Enzymes Inhibitors, Akın Akıncıoğlu, Ebutalib Kocaman, Hülya Akıncıoğlu, Ramin Ekhteiari Salmas, Serdar Durdagi, İlhami Gülçin, Claudiu T. Supuran, Süleyman Göksu, Bioorganic Chemistry, 2017. Doi: 10.1016/j.bioorg.2017.08.012. (Link)

  25. Discovery of Selective Dengue Virus Inhibitors Using Combination of Molecular Fingerprint-Based Virtual Screening Protocols, Structure-based Pharmacophore Model Development, Molecular Dynamics Simulations and in Vitro Studies, Shaher Bano Mirza, Regina Ching Hua Lee, Justin Jang Hann Chu, Ramin Ekhteiari Salmas, Thomas Mavromoustakos, Serdar Durdagi. Journal of Molecular Graphics and Modelling. 2017. Doi: 10.1016/j.jmgm.2017.08.006. (Link)

  26. Structure-based Design of hERG-Neutral Antihypertensive Oxazolone and Imidazolone Derivatives. Busecan Aksoydan, Isik Kantarcioglu, Ismail Erol, Ramin Ekhteiari Salmas, Serdar Durdagi,  Journal of Molecular Graphics and Modelling. 2017. Doi: 10.1016/j.jmgm.2017.08.004. (Link)

  27. A QM Protein-Ligand Investigation of Anti-psychotic Drugs with the Dopamine D2 Receptor (D2R), Ramin Ekhteiari Salmas, Yusuf Serhat Is, Serdar Durdagi, Matthias Stein, Mine Yurtsever, Journal of Biomolecular Structure & Dynamics, 2017. Doi: 10.1080/07391102.2017.1365772. (Link)

  28. Synthesis, Biological Activity and Multiscale Molecular Modeling Studies for Coumaryl-carboxamide Derivatives as Selective Carbonic Anhydrase IX Inhibitors. Belma Zengin Kurt, Fatih Sonmez, Serdar Durdagi, Busecan Aksoydan, Ramin Ekhteiari Salmas, Andrea Angeli , Mustafa Kucukislamoglu, Claudiu T. Supuran. Journal of Enzyme Inhibition and Medicinal Chemistry, 2017. Doi: 10.1080/14756366.2017.1354857. (Link)

  29. Effects of Propolis, Caffeic Acid Phenethyl Ester and Pollen on Renal Injury in Hypertensive Rat: An Experimental and Theoretical Approach, Ramin Ekhteiari Salmas, Mehmet Fuat Gulhan, Serdar Durdagi, Engin Sahna, Huda I. Abdullah, Zeliha Selamoglu, Cell Biochemistry and Function, June, 2017. Doi: 10.1002/cbf.3277. (Link)

  30. Investigation of Chemical Interactions of Small Peptides and Vitamin Substances at the Developed Dopamine D2 Receptor Models. Reyhan Aslancan, Busecan Aksoydan, Isik Kantarcioglu, Ismail Erol, Ramin Ekhteiari Salmas, Serdar Durdagi. European Psychiatry 2017 Doi: 10.1016/j.eurpsy.2017.02.369. (Link)

  31. First Universal Pharmacophore Model for hERG1 K+ Channel Activators, Serdar Durdagi, Ismail Erol, Ramin Ekhteiari Salmas, Matthew Patterson, Sergei Y. Noskov, Journal of Molecular Graphics and Modelling. 2017. Doi: 10.1016/j.jmgm.2017.03.020. (Link)

  32. Analysis of the Glutamate Agonist LY404,039 Binding to Non-Static Dopamine Receptor D2 Dimer Structures and Consensus Docking. Ramin Ekhteiari Salmas, Philip Seeman, Busecan Aksoydan, Ismail Erol, Isik Kantarcioglu, Matthias Stein, Mine Yurtsever, Serdar Durdagi, ACS Chem. Neurosci, 2017, Doi: 10.1021/acschemneuro.7b00070. (Link)

  33. Biochemical Changes Induced by Grapeseed Extract and Low Level Laser Therapy Administration During Intraoral Wound Healing in Rat Liver: An Experimental and in Silico Study, Mehmet Erman Erdemli, Ramin Ekhteiari Salmas, Serdar Durdagi, Hasan Akgul, Mehmet Demirkol, Zeynep Aksungur and Zeliha Selamoglu, Journal of Biomolecular Structure & Dynamics, 2017. Doi: 10.1080/07391102.2017.1305297. (Link)

  34. Identification of Novel Serotonin Reuptake Inhibitors Targeting Central and Allosteric Binding Sites: A Virtual Screening and Molecular Dynamics Simulations Study. Ismail Erol, Busecan Aksoydan, Isik Kantarcioglu, Ramin Ekhteiari Salmas, Serdar Durdagi, Journal of Molecular Graphics and Modelling. 2017. Doi: 10.1016/j.jmgm.2017.02.001 (Link)

  35. The Effects of Pollen, Propolis, and Caffeic Acid Phenethyl Ester on Tyrosine Hydroxylase Activity and Total RNA Levels in Hypertensive Rats Caused by Nitric Oxide Synthase Inhibition: Experimental, Docking and Molecular Dynamic Studies, Ramin Ekhteiari Salmas, Serdar Durdagi, Mehmet Fuat Gulhan, Merve Duruyurek, Huda I. Abdullah, Zeliha Selamoglu. Journal of Biomolecular Structure & Dynamics, 2017. Doi: 10.1080/07391102.2017.1288660 (Link)

  36. Synthesis, Anticholinesterase Activity and Molecular Modeling Study of Novel Carbamate-Substituted Thymol/Carvacrol Derivatives, Belma Zengin Kurt, Isil Gazioglu, Aydan Dag, Ramin Ekhteiari Salmas, Gulru Kayik, Serdar Durdagi, Fatih Sonmez, Bioorganic & Medicinal Chemistry, 2016 Doi: 10.1016/j.bmc.2016.12.037. (Link)

  37. Biological Insights of the Dopaminergic Stabilizer ACR16 at the Binding Pocket of Dopamine D2 Receptor, Ramin Ekhteiari Salmas, Philip Seeman, Busecan Aksoydan, Matthias Stein, Mine Yurtsever, Serdar Durdagi, ACS Chem. Neurosci, 2016, DOI: 10.1021/acschemneuro.6b00396. (Link)

  38. Solubility profiles, hydration and desolvation of curcumin complexed with γ-cyclodextrin and hydroxypropyl-γ-cyclodextrin, Sergey Shityakov, Ramin Ekhteiari Salmas, Serdar Durdagi, Norbert Roewer, Carola Förster, and Jens Broscheit, Journal of Molecular Structure, 2016, Doi: 10.1016/j.molstruc.2016.12.028 (Link)

  39. Characterization, In Vivo Evaluation and Molecular Modeling of Different Propofol-Cyclodextrin Complexes to Assess Their Drug Delivery Potential at The Blood-Brain Barrier Level, Sergey Shityakov, Ramin Ekhteiari Salmas, Serdar Durdagi, Ellaine Salvador, Katalin Papai, Maria Yanez-Gascon, Horacio Perez-Sanchez, Istvan Puskas, Norbert Roewer, Carola Forster, Jens-Albert Broscheit. 2016, Journal of Chemical Information and Modeling (ACS). Doi: 10.1021/acs.jcim.6b00215 (Link) 

  40. Discovery of Klotho Peptide Antagonists Against Wnt3 and  Wnt3a Target Proteins Using Combination of Protein  Engineering, Protein-Protein Docking, Peptide Docking and  Molecular Dynamics Simulations, Shaher Bano Mirza, Ramin Ekhteiari Salmas, M. Qaiser Fatmi, Serdar Durdagi. Journal of Enzyme Inhibition and Medicinal Chemistry, 2016. Doi: 10.1080/14756366.2016.1235569. (Link)

  41. The Signaling Pathway of Dopamine D2 Receptor (D2R) Activation Using Normal Mode Analysis (NMA) and the Construction of Pharmacophore Models for D2R Ligands. Ramin Ekhteiari Salmas, Matthias Stein, Mine Yurtsever, Philip Seeman,  Ismail Erol, Mert Mestanoglu, Serdar Durdagi. Journal of Biomolecular Structure and Dynamics, 2016. Doi: 10.1080/07391102.2016.1206487. (Link)

  42. Virtual Screening of Small Molecules Databases for Discovery of Novel PARP-1 Inhibitors: Combination of in silico and in vitro Studies, Ramin Ekhteiari Salmas, Ayhan Unlu, Muhammet Bektaş, Mine Yurtsever,  Mert Mestanoglu, Serdar Durdagi. Journal of Biomolecular Structure and Dynamics, 2016. Doi: 10.1080/07391102.2016.1199328. (Link)

  43. Acetylcholinesterase and Carbonic Anhydrase Inhibitory Properties of Novel Urea and Sulfamide Derivatives Incorporating Dopaminergic 2-Aminotetralin Scaffolds, Bünyamin Özgeriş, Süleyman Göksu, Leyla Polat Köse, İlhami Gülçin, Ramin Ekhteiari Salmas, Serdar Durdagi, Ferhan Tümer, Claudiu T. Supuran. Bioorganic & Medicinal Chemistry, April 2016 Doi: 10.1016/j.bmc.2016.04.002. (Link)

  44. Virtual Screening of Eighteen Million Compounds against Dengue Virus: Combined Molecular Docking and Molecular Dynamics Simulations Study, Shaher Bano Mirza, Ramin Ekhteiari Salmas, M. Qaiser Fatmi, Serdar Durdagi, Journal of Molecular Graphics and Modelling. 2016, DOI: 10.1016/j.jmgm.2016.03.008. (Link)

  45. Investigation of inhibition of human glucose 6-phosphate dehydrogenase by some 99m Tc chelators by in silico and in vitro methods, Ali Şahin, Murat Şentürk, Ramin Ekhteiari Salmas, Serdar Durdagi, Arif Ayan, Ali Karagölge, Mert Mestanoğlu. Journal of Enzyme Inhibition and Medicinal Chemistry, 2016. Doi: 10.1080/14756366.2016.1178735 (Link)

  46. Atomistic Molecular Dynamic Simulations of Typical and Atypical Anti-psychotic Drugs at the Dopamine D2 Receptor (D2R) Elucidates Their Inhibition Mechanism, Ramin Ekhteiari Salmas, Mine Yurtsever, Serdar Durdagi. Journal of Biomolecular Structure and Dynamics, 2016, Doi: 10.1080/07391102.2016.1159986. (Link)

  47. Evaluation of the potential toxicity of unmodified and modified cyclodextrins on murine blood-brain barrier endothelial cells, Sergey Shityakov, Ramin Ekhteiari Salmas, Ellaine Salvador,  Norbert Roewer, Jens Broscheit and Carola Förster. The Journal of Toxicological Sciences (J. Toxicol. Sci.) Vol.41, No.2, 175-184, 2016. Doi: 10.2131/jts.41.175. (Link)

  48. Binding Interactions of Dopamine and Apomorphine in D2High and D2Low States of human Dopamine D2 Receptor (D2R) using Computational and Experimental Techniques, Serdar Durdagi, Ramin Ekhteiari Salmas, Matthias Stein, Mine Yurtsever, Philip Seeman. ACS Chem. Neurosci, Doi: 10.1021/acschemneuro.5b00271. (Link)

  49. Mutated Form (G52E) of Inactive Diphtheria Toxin CRM197: Molecular Simulations Clearly Display Effect of the Mutation to NAD Binding, Ramin Ekhteiari Salmas, Mert Mestanoglu, Ayhan Unlu, Mine Yurtsever, Serdar Durdagi, Journal of Biomolecular Structure and Dynamics, 2015. DOI: 10.1080/07391102.2015.1119060. (Link)

  50. Leveraging NMR and X-ray Data of the Free Ligands to Build Better Drugs Targeting Angiotensin II Type 1 G-Protein Coupled Receptor. Tahsin F. Kellici, Dimitrios Ntountaniotis, Eftichia Kritsi, Maria Zervou, Panagiotis Zoumpoulakis, Constantinos Potamitis, Serdar Durdagi, Ramin Ekhteiari Salmas, Gizem Ergun, Ebru Gokdemir, Maria Halabalaki, Ioannis P. Gerothanassis, George Liapakis, Andreas Tzakos, Thomas Mavromoustakos. Current Medicinal Chemistry, 2015. Doi: 10.2174/0929867323666151117122116. (Link)

  51. Kinetic and docking studies of cytosolic/tumor-associated carbonic anhydrase isozymes I, II, and IX with some hydroxylic compounds, Serdar Durdagi, Neslihan Korkmaz, Semra Işık, Daniela Vullo, Demet Astley, Deniz Ekinci, Ramin E. Salmas, Murat Senturk & Claudiu T. Supuran Journal of Enzyme Inhibition and Medicinal Chemistry, 2015. Doi: 10.3109/14756366.2015.1114930. (Link)

  52. Carbonic anhydrase inhibitors: design, synthesis, kinetic, docking and molecular dynamics analysis of novel glycine and phenylalanine sulphonamide derivatives, İsmail Fidan, Ramin Ekhteiari Salmas, Mehmet Arslan, Murat Şentürkc, Serdar Durdagi, Deniz Ekincie, Sedat Coşgun, Claudiu T. Supuran, Bioorganic & Medicinal Chemistry. 2015. Doi: 10.1016/j.bmc.2015.10.009. (Link)

  53. Fullerene-Based Inhibitors of HIV-1 Protease, T. Amanda Strom, Serdar Durdagi, Suha Salih Ersoz, Ramin Ekhteiari Salmas, Claudiu T. Supuran, and Andrew R. Barron. Journal of Peptide Science, 2015. Doi: 10.1002/psc.2828. (Link)

  54. Protein Engineering Studies for C-C Chemokine Receptor Type 2 (CCR2), Ramin Ekhteiari Salmas, Mine Yurtsever, Serdar Durdagi. Current Enzyme Inhibition, 11: 1, 2015, DOI: 10.2174/1573408011666150807190410. (Link)

  55. Molecular Simulations of Solved Co-crystallized X-ray Structures Identify Action Mechanisms of PDEδ Inhibitors, Ramin Ekhteiari Salmas, Mert Mestanoglu, Mine Yurtsever, Sergei Y Noskov, Serdar Durdag.  Biophysical Journal. 2015. DOI: http://dx.doi.org/10.1016/j.bpj.2015.08.001. (Link)

  56. Investigation of Inhibition Mechanism of Chemokine Receptor CCR5 by Micro-second Molecular Dynamics Simulations, Ramin Ekhteiari Salmas, Mine Yurtsever, Serdar Durdagi, Scientific Reports : Nature Publishing Group, 2015. DOI:10.1038/srep13180. (Link)

  57. Discovering Novel Carbonic Anhydrase Type IX (CA IX) Inhibitors from Seven Million Compounds Using Virtual Screening and In Vitro Analysis, Ramin Ekhteiari Salmas, Murat Sentürk, Mine Yurtsever, Serdar Durdagi. Journal of Enzyme Inhibition and Medicinal Chemistry. DOI: 10.3109/14756366.2015.1036049. (Link)

  58. Protein Engineering Studies of Active and Inactive States of Human Dopamine D2 Receptor (D2R) and Investigation of Drug/Modeled Receptor Interactions, Ramin Ekhteiari Salmas, Mine Yurtsever, Matthias Stein, Serdar Durdagi. Mol Divers, DOI 10.1007/s11030-015-9569-3. 2015. (Link)

  59. In-Silico investigation of PARP-1 catalytic domains in holo and apo states and drug design studies for high affinity PARP-1 inhibitors, Ramin Ekhteiari Salmas, Ayhan Unlu, Mine Yurtsever, Sergei Y Noskov, Serdar Durdagi. Journal of Enzyme Inhibition and Medicinal Chemistry, 2014. DOI: 10.3109/14756366.2015.1005011. (Link)

  60. Kinetic and in silico studies of hydroxy-based inhibitors of carbonic anhydrase isoforms I and II, Ramin Ekhteiari Salmas, Mert Mestanoglu, Serdar Durdagi, Murat Sentürk, A. Afşin Kaya, Elif Çelenk Kaya. Journal of Enzyme Inhibition and Medicinal Chemistry, 2014. DOI:10.3109/14756366.2014.1003216. (Link)

  61. Carbonic Anhydrase Inhibitory Properties of Novel Benzylsulfamides Using Molecular Modelling and Experimental Studies, Süleyman Göksu, Ali Naderi, Yusuf Akbaba, Pınar Kalın, Akın Akıncıoğlu, İlhami Gülçin, Serdar Durdagi, Ramin Ekhteiari Salmas. Bioorganic Chemistry, 2014, Pages 75–82. DOI: 10.1016/j.bioorg.2014.07.009. (Link)

  62. Elucidation of Conformational States, Dynamics and Mechanism of Binding in Human κ-opioid Receptor Complexes, Georgios Leonis, Aggelos Avramopoulos, Ramin Ekhteiari Salmas, Serdar Durdagi, Mine Yurtsever, Manthos G. Papadopoulos. J. Chem. Inf. Model., 2014, 54 (8), pp 2294–2308. DOI: 10.1021/ci5002873. (Link)

  63. Silver−Sodium Ion Exchange Dynamics in LTA Zeolite Membranes, Ramin Ekhteiari Salmas, Barış Demir, Erol Yıldırım, Ahmet Sirkecioğlu, Mine Yurtsever and M. Göktuğ Ahunbay. J. Phys. Chem. C 2013, 117, 1663−1671. DOI: 10.1021/jp311534e. (Link)