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Princeton HTSEQ Users Group
Introduction
Meetings
Tutorials
ChIP-Seq
File Formats
Introduction to Sequencing
Library Preparation
MSG on Cetus
RNA-Seq
RNA-Seq Tuxedo tools workflow
rna-seq-new
SNP and Indel Detection
VAMP on cetus
Visualization with Galaxy and IGV
IGV as a display application in Galaxy
Discussion Group
Members
Princeton HTSEQ Users Group
Introduction
Meetings
Tutorials
ChIP-Seq
File Formats
Introduction to Sequencing
Library Preparation
MSG on Cetus
RNA-Seq
RNA-Seq Tuxedo tools workflow
rna-seq-new
SNP and Indel Detection
VAMP on cetus
Visualization with Galaxy and IGV
IGV as a display application in Galaxy
Discussion Group
Members
More
Introduction
Meetings
Tutorials
ChIP-Seq
File Formats
Introduction to Sequencing
Library Preparation
MSG on Cetus
RNA-Seq
RNA-Seq Tuxedo tools workflow
rna-seq-new
SNP and Indel Detection
VAMP on cetus
Visualization with Galaxy and IGV
IGV as a display application in Galaxy
Discussion Group
Members
Tutorials
Introduction to Sequencing
- Slides from talk by Danielle Carpenter of the Botstein Lab (6/15/2011)
Sample/Library Preparation
Sample Submission
Data Retrieval
General Data Analysis
Barcode Splitting Multiplexed Samples
-
For Princeton Users Only
, how to use split multiplexed data using the Princeton Galaxy system
File Formats
- explanations of common sequencing data file formats (FASTQ, Export.txt, SAM, BAM, VCF, BCF, etc.)
Quality Control and Pre-processing
SNP and Indel Detection
ChIP-Seq
RNA-Seq
Tag Counting
de-novo
Assembly
Visualization with Galaxy and IGV
Using Software Packages at Princeton (for Princeton Internal Use Only)
Multiplexed shotgun genotyping (MSG)
- How to use
MSG
on the Genomics
cetus grid
Virus AsseMbly Pipeline (VAMP) on cetus
- Using
VAMP
on the Princeton Genomics
cetus grid
.
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