Tutorials
- Introduction to Sequencing - Slides from talk by Danielle Carpenter of the Botstein Lab (6/15/2011)
- Sample/Library Preparation
- Sample Submission
- Data Retrieval
- General Data Analysis
- Barcode Splitting Multiplexed Samples - For Princeton Users Only, how to use split multiplexed data using the Princeton Galaxy system
- File Formats - explanations of common sequencing data file formats (FASTQ, Export.txt, SAM, BAM, VCF, BCF, etc.)
- Quality Control and Pre-processing
- SNP and Indel Detection
- ChIP-Seq
- RNA-Seq
- Tag Counting
- de-novo Assembly
- Visualization with Galaxy and IGV
- Using Software Packages at Princeton (for Princeton Internal Use Only)
- Multiplexed shotgun genotyping (MSG) - How to use MSG on the Genomics cetus grid
- Virus AsseMbly Pipeline (VAMP) on cetus - Using VAMP on the Princeton Genomics cetus grid.