Software & Code

R Packages:

mbsts: Multivariate Bayesian Structural Time Series   

Cran Download   Github Example Code 

Role: Author & Maintainer   

Research Paper: J. Qiu, R. Jammalamadaka and N. Ning, Multivariate Bayesian Structural Time Series Model, Journal of Machine Learning Research, 19(68):1-33, 2018.

Package Paper: N. Ning and J. Qiu, The mbsts package: Multivariate Bayesian Structural Time Series Models in R.

Package Download Counts: 21,808 since year 2020.

spatPomp: Inference for Spatiotemporal Partially Observed Markov Processes

Cran Download   Github Example Code 

Role: Contributor  

Research Paper: N. Ning* and E. Ionides, Iterated Block Particle Filter for High-dimensional Parameter Learning: Beating the Curse of Dimensionality, Journal of Machine Learning Research, 24(82):1−76, 2023. 

Package Paper: N. Ning and E. Ionides, Using an iterated block particle filter via spatPomp 

metapoppkg: R Package for Metapop Article

Zenodo Download   Github Example Code 

Role: Author  

Research Paper: J. Li (my PhD student), E. Ionides*, A. King, M. Pascualand, and N. Ning*, Machine Learning for Mechanistic Models of Metapopulation Dynamics

Package Paper: under development