＜原著論文＞(＊Corresponding Author)
71. Burger, M., Glass, F., Jörg, A., Takenaka, M.* (2026) Embryo rescue uncovers an essential role for MEF45 in four mitochondrial RNA editing events in Arabidopsis. Plant Biotechnology in press
70. Marchetti, F., Balestieri, N., Becerra-Agudelo, E., Valiñas, M., Amigo, N., Matan, R., Mizrahi, R., Takenaka, M., Welchen, E., Pagnussat, G. C., Ostersetzer-Biran, O., Zabaleta, E. (2026). EMB2217 Is a Mitochondrial PPR-SMR Protein Required for the Splicing of Multiple Group II Introns During Arabidopsis Development. Physiologia Plantarum 178(4), e71053. https://doi.org/10.1111/ppl.71053
69. Kobaivanov, E., Frink, B., Takenaka, M., Ostersetzer-Biran, O. (2026) PCIS1 is an essential factor in mitochondrial RNA splicing and complex I biogenesis, with distinct effects in null and downregulated mutants. Plant Cell Rep. 45(7):210. doi:10.1007/s00299-026-03821-w
68. Wang, T., Takenaka, M.* (2025) The molecular basis and evolution of the organellar RNA editosome by complementary DYW deaminases in seed plants, Plant Physiol. Volume 197 (4) kiaf142, https://doi.org/10.1093/plphys/kiaf142
67. Yamagishi, H., Hashimoto, A., Fukunaga, A., Takenaka, M., Terachi, T. (2024). Identification and variation of a new restorer of fertility gene that induces cleavage in orf138 mRNA of Ogura male sterility in radish. Theoretical and Applied Genetics 137(10), 231. https://doi.org/10.1007/s00122-024-04736-4
66. Frink, B., Burger, M., Yarkoni, M., Shevtsov-Tal, S., Zer, H., Yamaoka, S., Ostersetzer-Biran, O., Takenaka, M.* (2024). PCIS1, encoded by a pentatricopeptide protein co-expressed gene, is required for splicing of three mitochondrial nad transcripts in angiosperms. Plant Cell Physiol. pcae086. Advance online publication. https://doi.org/10.1093/pcp/pcae086
65. Bayer-Császár, E., Jörg, A., Härtel, B., Brennicke, A., Takenaka, M.* (2023) The Gating Domain of MEF28 is Essential for Editing Two Contiguous Cytidines in nad2 mRNA in Arabidopsis thaliana. Plant Cell Physiol. 65(4):590-601. doi: 10.1093/pcp/pcad087. Epub ahead of print. PMID: 37530742.
64. Yang, Y., Oldenkott, B., Ramanathan, S., Lesch, E., Takenaka, M., Schallenberg-Rüdinger, M. and Knoop, V. (2023), DYW cytidine deaminase domains have a long-range impact on RNA recognition by the PPR array of chimeric plant C-to-U RNA editing factors and strongly affect target selection. Plant J. 116(3):840-854. https://doi.org/10.1111/tpj.16412
63. Jung, L., Schleicher, S., Alsaied Taha, F., Takenaka, M., Binder, S. (2023), The MITOCHONDRIAL TRANSCRIPT STABILITY FACTOR 4 (MTSF4) is essential for the accumulation of dicistronic rpl5-cob mRNAs in Arabidopsis thaliana. Plant J. 113(2), 375–386. https://doi.org/10.1111/tpj.16053
62. Toma-Fukai S., Sawada Y., Maeda A., Shimizu H., Shikanai T., Takenaka, M., Shimizu T. (2023) Structural insight into the activation of an Arabidopsis organellar C-to-U RNA editing enzyme by active site complementation. Plant Cell 35(6):1888-1900. doi: 10.1093/plcell/koac318.
61. Maeda A, Takenaka S, Wang T, Frink B, Shikanai T, Takenaka, M.* (2022) DYW deaminase domain has a distinct preference for neighboring nucleotides of the target RNA editing sites. Plant J. 111, 756-767. doi: 10.1111/tpj.15850.
60. Nakazato, I., Okuno, M., Zhou, C., Itoh, I., Tsutsumi, N., Takenaka, M., Arimura, S. (2022) Targeted base editing in the mitochondrial genome of Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 119(20):e2121177119. doi: 10.1073/pnas.2121177119.
59. Takenaka, M.*, Takenaka, S., Barthel, T., Frink, B., Haag, S., Verbitskiy, D., Oldenkott, B., Schallenberg-Rüdinger, M., Feiler, C.G., Weiss, M.S., Palm, G.J., Weber, G.* (2021) DYW domain structures imply an unusual regulation principle in plant organellar RNA editing catalysis. Nature Catalysis 4, 510–522. *Co-corresponding authors
58. Yamagishi, H., Jikuya, M., Okushiro, K., Hashimoto, A., Fukunaga, A., Takenaka, M., Terachi, T. (2021) A single nucleotide substitution in the coding region of Ogura male sterile gene, orf138, determines effectiveness of a fertility restorer gene, Rfo, in radish. Mol. Genet. Genomics https://doi.org/10.1007/s00438-021-01777-y
57. Higashi, H., Kato, Y., Fujita, T., Iwasaki, S., Nakamura, M., Nishimura, Y., Takenaka, M., Shikanai, T. (2021). The pentatricopeptide repeat protein PGR3 is required for the translation of petL and ndhG by binding their 5'UTRs. Plant Cell Physiol.62, 1146-1155. https://doi.org/10.1093/pcp/pcaa180
56. Oldenkott, B., Burger, M., Hein, A. C., Jörg, A., Senkler, J., Braun, H. P., Knoop, V., Takenaka, M., Schallenberg-Rüdinger, M. (2020) One C-to-U RNA Editing Site and Two Independently Evolved Editing Factors: Testing Reciprocal Complementation with DYW-type PPR Proteins from the Moss Physcomitrium (Physcomitrella) Patens and the Flowering Plants Macadamia integrifolia and Arabidopsis thaliana. Plant Cell 32, 2997-3018. DOI: https://doi.org/10.1105/tpc.20.00311
55. Brehme, N., Glass, F., Jörg, A., Takenaka, M.* (2020) MEF46 and MEF47 are novel specificity factors for RNA editing sites in mitochondrial nad transcripts. Mitochondrion 53, 121-127.
54. Marchetti, F., Cainzos, M., Shevtsov, S., Córdoba, J. P., Sultan, L. D., Brennicke, A., Takenaka, M., Pagnussat, G., Ostersetzer-Biran, O., Zabaleta, E. (2020). Mitochondrial Pentatricopeptide Repeat Protein, EMB2794, Plays a Pivotal Role in NADH Dehydrogenase Subunit nad2 mRNA Maturation in Arabidopsis thaliana. Plant Cell Physiol. 61, 1080-1094. https://doi.org/10.1093/pcp/pcaa028
53. Malbert, B., Burger, M., Lopez-Obando, M., Baudry, K., Launay-Avon, A., Härtel, B., Verbitskiy, D., Jörg, A., Berthomé, R., Lurin, C., Takenaka, M., Delannoy, E. (2020) The Analysis of the Editing Defects in the dyw2 Mutant Provides New Clues for the Prediction of RNA Targets of Arabidopsis E+-Class PPR Proteins. Plants 9, 280.
52. Arenas-M, A., González-Durán, E., Gómez, I., Burger, M., Brennicke, A., Takenaka, M., Jordana, X. (2017) The Pentatricopeptide Repeat Protein MEF31 is Required for Editing at Site 581 of the tatC Transcript and Indirectly Influences Editing at Site 586 of the Same Transcript. Plant Cell Physiol. 59, 355-365
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49. Guillaumot, D., Lopez-Obando, M., Baudry, K., Avon, A., Rigaill, G., Falcon de Longevialle, A., Broche, B., Takenaka, M., Berthomé, R., De Jaeger, G., Delannoy, E., Lurin, C. (2017) Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria. Proc. Natl. Acad. Sci. USA 114, 8877-8882
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47. Haag, S., Schindler, M., Berndt, L., Brennicke, A., Takenaka, M., Weber, G. (2017) Crystal structures of the Arabidopsis organellar RNA editing factors MORF1 and MORF9. Nucleic Acids Res. 45, 4915–4928
46. Hammani, K., Takenaka, M., Miranda, R., Barkan, A. (2016) A PPR protein in the PLS subfamily stabilizes the 5’-end of processed rpl16 mRNAs in maize chloroplasts. Nucleic Acids Res. 44, 4278-4288.
45. Lin, P.C., Lu, C.W., Shen, B.N., Lee, G.Z., Bowman, J.L., Arteaga-Vazquez, M.A., Liu, L.Y.D., Hong, S.F., Lo, C.F., Su, G.M., Kohchi, T., Ishizaki, K., Zachgo, S., Althoff, F., Takenaka, M., Yamato, K.T., Lin, S.S. (2016) Identification of miRNAs and their targets in the liverwort Marchantia polymorpha by integrating RNA-Seq and degradome analyses. Plant Cell Physiol. 57, 339-358.
44. Brehme N., Bayer-Császár E., Glass F., Takenaka, M.* (2015) The DYW Subgroup PPR Protein MEF35 Targets RNA Editing Sites in the Mitochondrial rpl16, nad4 and cob mRNAs in Arabidopsis thaliana. PLoS ONE 10(10):e0140680. doi: 10.1371/journal.pone.0140680.
43. Glass, F., Härtel, B., Zehrmann, A., Verbitskiy, D., Takenaka, M.* (2015) MEF13 requires MORF3 and MORF8 for RNA editing at eight targets in mitochondrial mRNAs in Arabidopsis thaliana. Mol. Plant 8, 1466-1477.
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41. Arenas-M, A., Zehrmann, A., Moreno, S., Gómez, I., Takenaka, M., Jordana, X. (2014) The pentatricopeptide repeat protein MEF26 participates in RNA editing in mitochondrial cox3 and nad4 transcripts. Mitochondrion 19 Pt B:126-134
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33. Zhu, Q., Dugardeyn, J., Zhang, C., Takenaka, M., Kühn, K., Craddock, C., Smalle, J., Karampelias, M., Denecke, J., Peters, J., Gerats, T., Brennicke, A., Eastmond, P., Meyer, EH., Van Der Straeten, D. (2012) SLO2, a mitochondrial PPR protein affecting several RNA editing sites, is required for energy metabolism. Plant J. 71, 836-849
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31. Sosso, D., Mbelo, S., Vernoud, V., Gendrot, G., Dedieu, A., Chambrier, P., Dauzat, M., Heurtevin, L., Guyon, V., Takenaka, M., Rogowsky, P. M. (2012), PPR2263, a DYW-subgroup pentatricopeptide repeat protein, is required for mitochondrial nad5 and cob transcript editing, mitochondrion biogenesis and maize growth. Plant Cell 24, 676-691
30. Zehrmann, A., van der Merwe, J. A., Verbitskiy, D., Härtel, B., Brennicke, A., Takenaka, M.* (2012) The DYW-class PPR protein MEF7 is required for RNA editing at four sites in mitochondria of Arabidopsis thaliana. RNA Biol. 9, 155-161
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23. Verbitskiy, D., Zehrmann, A., Brennicke, A., Takenaka, M.* (2010) A truncated MEF11 protein shows site-specific effects on mitochondrial RNA editing. Plant Signal. Behav. 5, 558-560
22. Takenaka, M.* (2010) MEF9, an E subclass PPR protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis thaliana. Plant Physiol. 152, 939-947
21. Verbitskiy, D., Zehrmann, A., van der Merwe, J. A., Brennicke, A., Takenaka, M.* (2009) The PPR-protein encoded by the LOVASTATIN INSENSITIVE 1 gene is involved in RNA editing at three sites in mitochondria of Arabidopsis thaliana. Plant J. 61, 446-455
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