3. Publications‎ > ‎

Research Papers

46. Glass, F., Härtel, B., Zehrmann, A., Verbitskiy, D., Takenaka, M. (2015) MEF13 requires MORF3 and MORF8 for RNA editing at eight targets in mitochondrial mRNAs in Arabidopsis thaliana. Mol. Plant doi.org/10.1016/j.molp.2015.05.008

45. Zehrmann, A., Härtel, B., Glass, F., Bayer-Csaszar, E., Obata, T., Meyer, E., Brennicke, A., Takenaka, M. (2015) Selective homo- and heteromer interactions between the multiple organellar RNA editing factor (MORF) proteins in Arabidopsis thaliana. J. Biol. Chem. pii: jbc.M114.602086.

44. Arenas-M, A., Zehrmann, A., Moreno, S., Gómez, I., Takenaka, M., Jordana, X. (2014) The pentatricopeptide repeat protein MEF26 participates in RNA editing in mitochondrial cox3 and nad4 transcripts. Mitochondrion 19 Pt B:126-134

43. Brehme, N., Zehrmann, A., Verbitskiy, D., Härtel, B., Takenaka, M. (2014) Mitochondrial RNA editing PPR proteins can tolerate proteintags at E as well as at DYW domain termini. Front. Plant Sci. 5:127

42. Härtel, B., Zehrmann, A., Verbitskiy, D., Takenaka, M. (2013) The longest mitochondrial RNA editing PPR protein MEF12 in Arabidopsis thaliana requires the full length E domain. RNA Biol. 10, 1337-1342

41. Takenaka, M., Zehrmann, A.,Brennicke, A., Graichen, K.(2013) Improved computational target site prediction for pentatricopeptide repeat RNA editing factors. PLoS ONE 8, e65343.

40. Arenas-M, A., Takenaka, M., Moreno, S., Gómez, I., Jordana, X. (2013) Contiguous RNA editing sites in the mitochondrial nad1 transcript of Arabidopsis thaliana are recognized by different proteins. FEBS Lett. 587, 887-891

39. Härtel, B., Zehrmann, A., Verbitskiy, D., van der Merwe, J. A., Brennicke, A., Takenaka, M. (2013) MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8. Plant Mol. Biol. 81, 337-346

38. Takenaka, M., and Brennicke, A. (2012) Using multiplex single-base extension typing to screen for mutants defective in RNA editing. Nat Protoc. 7, 1931-1945

37. Verbitskiy, D., Zehrmann, A., Härtel, B., Brennicke, A.,Takenaka, M. (2012) Two related RNA editing proteins target the same sites in mitochondria of Arabidopsis thaliana. J. Biol. Chem. 287, 38064-38072

36. Zhu, Q., Dugardeyn, J., Zhang, C., Takenaka, M., Kühn, K., Craddock, C., Smalle, J., Karampelias, M., Denecke, J., Peters, J., Gerats, T., Brennicke, A., Eastmond, P., Meyer, EH., Van Der Straeten, D. (2012) SLO2, a mitochondrial PPR protein affecting several RNA editing sites, is required for energy metabolism. Plant J. 71, 836-849

35. Takenaka, M., Zehrmann, A., Härtel, B., Kugelmann, M., Verbitskiy, D., Brennicke, A. (2012) MORF family proteins are required for RNA editing in mitochondria and plastids of plants. Proc. Natl. Acad. Sci. USA 109, 5104-5109

34. Sosso, S., Mbelo, S. , Vernoud, V., Gendrot, G., Dedieu, A., Chambrier, P., Dauzat, M., Heurtevin, L., Guyon, V., Takenaka, M. and Rogowsky, P. M. (2012), PPR2263, a DYW-subgroup pentatricopeptide repeat protein, is required for mitochondrial nad5 and cob transcript editing, mitochondrion biogenesis and maize growth. Plant Cell 24, 676-691

33. Zehrmann, A., van der Merwe, J. A., Verbitskiy, D., Härtel, B., Brennicke, A., Takenaka, M. (2012) The DYW-class PPR protein MEF7 is required for RNA editing at four sites in mitochondria of Arabidopsis thaliana. RNA Biol. 9, 1-7

32. Verbitskiy, D., van der Merwe, J. A., Zehrmann, A., Härtel, B., Takenaka, M. (2012) The E-class PPR Protein MEF3 of Arabidopsis thaliana can Function in Mitochondrial RNA editing also with an Additional DYW Domain. Plant Cell Physiol. 53, 358-367

31. Hammani, K., Takenaka, M., Tanz, S.K., Okuda, K., Shikanai, T., Brennicke, A., Small, I. (2011) The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria. J. Biol. Chem. 286, 21361-21371.

30. Zehrmann, A., Verbitskiy, D., Härtel, B., Brennicke, A., Takenaka, M. (2011) PPR proteins network as site-specific RNA editing factors in plant organelles. RNA Biol. 8, 67-70

29. Verbitskiy, D., Zehrmann, A., Härtel, B., Brennicke, A., Takenaka, M. (2011) The DYW-E-PPR protein MEF14 is required for RNA editing at site matR-1895 in mitochondria of Arabidopsis thaliana. FEBS Lett. 585, 700-704

28. Zehrmann, A., Verbitskiy, D., Härtel, B., Brennicke, A., Takenaka, M. (2010) RNA editing competence of trans-factor MEF1 is modulated by ecotype-specific differences but requires the DYW domain. FEBS Lett. 584, 4181-4186

27. Takenaka, M., Verbitskiy, D., Zehrmann, A., Brennicke, A. (2010) Reverse genetic screening identifies five E-class PPR-proteins involved in RNA editing in mitochondria of Arabidopsis thaliana. J. Biol. Chem. 285, 27122-27129

26. Takenaka, M. (2011) Identifying specific trans-factors of RNA editing in plant mitochondria by multiplex single base extension typing. In: RNA and DNA editing. (R. Aphasizhev, ed.) Humana Press, Springer, Heidelberg, pp. 151-161

25. Takenaka, M., and Zehrmann, A. (2011) Complementation of Mutants in Plant Mitochondrial RNA Editing by Protoplast Transfection. In: RNA and DNA editing. (R. Aphasizhev, ed.) Humana Press, Springer, Heidelberg, pp. 163-169

24. Verbitskiy, D., Zehrmann, A., Brennicke, A., Takenaka, M. (2010) A truncated MEF11 protein shows site-specific effects on mitochondrial RNA editing. Plant Signal. Behav. 5, 558-560

23. Takenaka, M. (2010) MEF9, an E subclass PPR protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis thaliana. Plant Physiol. 152, 939-947

22. Verbitskiy, D., Zehrmann, A., van der Merwe, J. A., Brennicke, A., Takenaka, M. (2009) The PPR-protein encoded by the LOVASTATIN INSENSITIVE 1 gene is involved in RNA editing at three sites in mitochondria of Arabidopsis thaliana. Plant J. 61, 446-455

21. Zehrmann, A., Verbitskiy, D., van der Merwe, J. A., Brennicke, A., Takenaka, M. (2009) A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana. Plant Cell 21, 558-567

20. Takenaka, M., Brennicke, A. (2009) Multiplex single-base extension typing to identify nuclear genes required for RNA editing in plant organelles. Nucleic Acids Res. 37, e13

19. Zehrmann, A., van der Merwe, J. A., Verbitskiy, D., Brennicke, A., Takenaka, M. (2008) Seven large variations in the extent of RNA editing in plant mitochondria between three ecotypes of Arabidopsis thaliana.  Mitochondrion 8, 319-327


18. Verbitskiy, D., van der Merwe, J. A., Zehrmann, A., Brennicke, A., Takenaka, M. (2008) Multiple specificity-recognition motifs enhance RNA editing in plant mitochondria. J. Biol. Chem. 283, 24374-24381

17. Takenaka, M., Verbitskiy, D., van der Merwe, J. A., Zehrmann, A., Plessmann, U., Urlaub, H., Brennicke, A. (2007) In vitro RNA editing in plant mitochondria does not require energy. FEBS Lett. 58, 2743-2747

16. Yamato, K., Ishizaki, K., Fujisawa, M., Okada, S., Nakayama, S., Fujishita, M., Bando, H., Yodoya, K., Hayashi, K., Bando, T., Hasumi, A., Nishio, T., Sakata, R., Yamamoto, M., Yamaki, A., Kajikawa, M., Yamano, T., Nishide, T., Choi, S.-H., Shimizu-Ueda, Y., Hanajiri, T., Sakaida, M., Kohno, K., Takenaka, M., Yamaoka, S., Kuriyama, C., Kohzu, Y., Nishida, H., Brennicke, A., Shin-I, T., Kohara, Y., Kohchi, T., Fukuzawa, H., Ohyama, K. (2007) Gene organization of the Y chromosome in the haploid dioecious liverwort, Marchantia polymorpha L. Proc. Natl. Acad. Sci. USA 104, 6472-6477

15. Takenaka, M., Brennicke, A. (2007) RNA editing in plant mitochondria: assays and biochemical approaches. Meth. Enzymol. 424, 437-458

14. Verbitskiy, D., Takenaka, M., Neuwirt, J., van der Merwe, J.A., Brennicke, A. (2006) Partially edited RNAs are intermediates of RNA editing in plant mitochondria. Plant J. 47, 408-416

13. van der Merwe, J. A., Takenaka, M., Neuwirt, J., Verbitskiy, D., Brennicke, A. (2006) RNA editing sites in plant mitochondria can share cis-elements. FEBS Lett. 580, 268-272

12. Neuwirt, J., Takenaka, M., van der Merwe, J. A., Brennicke, A. (2005) An in vitro RNA editing system from cauliflower mitochondria: Editing site recognition parameters can vary in different plant species. RNA 11, 1563-1570

11. Takenaka, M., Neuwirt, J. Brennicke, A. (2004) Complex cis-elements determine an RNA editing site in pea mitochondria. Nucleic Acids Res. 32, 4137-4144

10. Yamaoka, S., Takenaka, M., Hanajiri, T., Shimizu-Ueda, Y., Nishida, H., Yamato, K. T., Fukuzawa, H. Ohyama, K. (2004) A mutant with constitutive sexual organ development in Marchantia polymorpha L. Sex. Plant Reprod. 16, 253-257

9. Takenaka, M., Brennicke, A. (2003) In vitro RNA editing pea mitochondria requires NTP or dNTP, suggesting involvement of an RNA helicase. J. Biol. Chem. 278, 47526-47533

8. Okada, S., Sone, T., Fujisawa, M., Nakayama, S., Takenaka, M., Ishizaki, K., Kono, K., Shimizu-Ueda, Y., Hanajiri, T., Yamato, K. T., Fukuzawa, H. Brennicke, A. Ohyama, K. (2001) The Y chromosome in the liverwort Marchantia polymorpha has accumulated unique repeat sequences harboring a male-specific gene. Proc. Natl. Acad. Sci. USA 98, 9454-9459

7. Okada, S., Fujisawa, M., Sone, T., Nakayama, S., Nishiyama, R., Takenaka, M., Yamaoka, S., Sakaida, M., Kono, K., Takahama, M., Yamato, K. T., Fukuzawa, H., Brennicke, A. Ohyama, K. (2000). Construction of male and female PAC genomic libraries suitable for identification of Y-chromosome-specific clones from the liverwort, Marchantia polymorpha. Plant J. 24, 421-428

6. Takenaka, M., Yamaoka, S., Hanajiri, T., Shimizu-Ueda, Y., Yamato, K. T., Fukuzawa, H. Ohyama, K. (2000). Direct transformation and plant regeneration of the haploid liverwort Marchantia polymorpha L. Transgenic Res. 9, 179-185

5. Nishiyama, R., Yamato, K. T., Miura, K., Sakaida, M., Okada, S., Kono, K., Takahama, M., Sone, T., Takenaka, M., Fukuzawa, H. Ohyama, K. (2000). Comparison of expressed sequence tags from male and female sexual organs of Marchantia polymorpha. DNA Res. 7, 165-174

4. Sone, T., Fujisawa, M., Takenaka, M., Nakagawa, S., Yamaoka, S., Sakaida, M., Nishiyama, R., Yamato, K. T., Ohmido, N., Fukui, K., Fukuzawa, H. Ohyama, K. (1999). Bryophyte 5S rDNA was inserted into 45S rDNA repeat units after the divergence from higher land plants. Plant Mol. Biol. 41, 679-685

3. Nishiyama, R., Mizuno, H., Okada, S., Yamaguchi, T., Takenaka, M., Fukuzawa, H. Ohyama, K. (1999). Two mRNA species encoding calcium-dependent protein kinases are differentially expressed in sexual organs of Marchantia polymorpha through alternative splicing. Plant Cell Physiol. 40, 205-212

2. Akashi, K., Takenaka, M., Yamaoka, S., Suyama, Y., Fukuzawa, H. Ohyama, K. (1998). Coexistence of nuclear DNA-encoded tRNAVal(AAC) and mitochondrial DNA-encoded tRNAVal(UAC) in mitochondria of a liverwort Marchantia polymorpha. Nucleic Acids Res. 26, 2168-2172

1. Akashi, K., Hirayama, J., Takenaka, M., Yamaoka, S., Suyama, Y., Fukuzawa, H. Ohyama, K. (1997). Accumulation of nuclear-encoded tRNAThr (AGU) in mitochondria of the liverwort Marchantia polymorpha. Biochim. Biophys. Acta. 1350, 262-266









Comments