Embedded Files
SGWE - Simulation of genome evolution under heterogeneous substitution models and a variety of evolutionary scenarios
CoalEvol - Simulation of DNA, codon and protein evolution with complex recombination, migration, demographics and species trees. It improves Recodon and NetRecodon
ProteinEvolver - Simulation of protein evolution accounting for structural protein constrains
NetRecodon - Simulation of DNA and codon evolution with recombination, migration and demographics
Recodon - Simulation of DNA and codon evolution with recombination, migration and demographics
EModelDB - A database of empirical substitution models of protein evolution. GUI. In collaboration with Iglesias-Rivas P (main developer), Del Amparo R, Cabaleiro JA, Arenas M
Splatche - Simulation of genetic data (DNA, SNP, STR) under spatially-explicit evolutionary scenarios. In collaboration with Mathias Currat, Claudio Quilodran, Laurent Excoffier and Nicolas Ray (main developers)
ProtASR - Ancestral sequence reconstruction of protein sequences accounting for protein folding stability
CodABC - Coestimation of recombination, substitution and molecular adaptation (dN/dS) rates by approximate Bayesian computation in codon sequences
ProteinEvolverABC - Coestimation of recombination and substitution rates in multiple alignments of protein sequences using approximate Bayesian computation
NetTest - Mathematical characterization of phylogenetic networks
SIMULATION OF GENETIC DATA
SIMULATION OF GENETIC DATA
SGWE. Simulation of genome/proteome-wide evolution under heterogeneous substitution models and a variety of evolutionary scenarios.
SGWE. Simulation of genome/proteome-wide evolution under heterogeneous substitution models and a variety of evolutionary scenarios.
Current version is 7.3.5
Current version is 7.3.5
© 2012-2014 Miguel Arenas & David Posada
CoalEvol. Simulation of alignments of nucleotide, codon and amino acid sequences, contemporaneous or longitudinal, from populations evolved under a neutral coalescent model with a variety of evolutionary scenarios such as recombination (including recombination hotspots and intracodon recombination), migration, demographics and species/population trees. User specified trees can also be applied. Overall, this simulator implements all features of Recodon and NetRecodon as well as many other scenarios.
CoalEvol. Simulation of alignments of nucleotide, codon and amino acid sequences, contemporaneous or longitudinal, from populations evolved under a neutral coalescent model with a variety of evolutionary scenarios such as recombination (including recombination hotspots and intracodon recombination), migration, demographics and species/population trees. User specified trees can also be applied. Overall, this simulator implements all features of Recodon and NetRecodon as well as many other scenarios.
Current version is 7.3.5
Current version is 7.3.5
© 2009-2014 Miguel Arenas & David Posada
© 2009-2014 Miguel Arenas & David Posada
ProteinEvolver. Simulation of protein evolution along phylogenies under structure-based substitution models
ProteinEvolver. Simulation of protein evolution along phylogenies under structure-based substitution models
Current version is 2.2.1
Current version is 2.2.1
NetRecodon. Simulation of DNA (coding and non coding) sequences with (inter and intracodon) recombination, migration and demographics
NetRecodon. Simulation of DNA (coding and non coding) sequences with (inter and intracodon) recombination, migration and demographics
Current version is 6.0.0
Current version is 6.0.0
© 2009-2011 Miguel Arenas and David Posada
Recodon. Simulation of DNA (coding and non coding) sequences with (intercodon) recombination, migration and demographics
Recodon. Simulation of DNA (coding and non coding) sequences with (intercodon) recombination, migration and demographics
Current version is 1.6.0
Current version is 1.6.0
© 2007-2011 Miguel Arenas and David Posada
© 2007-2011 Miguel Arenas and David Posada
Splatche. Simulation of genetic data (DNA, SNP, STR) under spatially-explicit evolutionary scenarios. In collaboration with Mathias Currat, Claudio Quilodran, Laurent Excoffier and Nicolas Ray (main developers)
Splatche. Simulation of genetic data (DNA, SNP, STR) under spatially-explicit evolutionary scenarios. In collaboration with Mathias Currat, Claudio Quilodran, Laurent Excoffier and Nicolas Ray (main developers)
Current version is 3.0
Current version is 3.0
ANALYSIS OF GENETIC DATA
ANALYSIS OF GENETIC DATA
Current version is 2.1
Current version is 2.1
© 2013-2020 Miguel Arenas & Ugo Bastolla
CodABC. Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation
CodABC. Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation
Current version is 2.0.0
Current version is 2.0.0
© 2009-2015 Miguel Arenas, Joao S Lopes, Mark A Beaumont & and David Posada
© 2009-2015 Miguel Arenas, Joao S Lopes, Mark A Beaumont & and David Posada
ProteinEvolverABC. Coestimation of recombination and substitution rates from protein sequences by approximate Bayesian computation
ProteinEvolverABC. Coestimation of recombination and substitution rates from protein sequences by approximate Bayesian computation
Current version is 1.0.0
Current version is 1.0.0
© 2022 Miguel Arenas
© 2022 Miguel Arenas
Current version is 1.0.0
Current version is 1.0.0
© 2010 Miguel Arenas, Mateus Patricio, David Posada & Gabriel Valiente
© 2010 Miguel Arenas, Mateus Patricio, David Posada & Gabriel Valiente
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