R. Chandler's and B. DeLuca's course on hierarchical modeling
Bolker, B. 2008. Ecological models and data in R.
Clark, J. S. 2007. Statistical computation for environmental sciences in R: lab manual for Models for Ecological Data.
Kery, M. 2010. Introduction to WinBUGS for ecologists: a Bayesian approach to regression, ANOVA, mixed models, and related analyses. Web supplement with BUGS code and data.
Link, W. A. and R. J. Barker. 2010. Bayesian inference with ecological applications. Web supplement with R and BUGS code.
McCarthy, M. A. 2007. Bayesian methods for ecology. Web supplement with BUGS code.
Royle, J. A. and R. M. Dorazio. 2008. Hierarchical modeling and inference in ecology: the analysis of data from populations, metapopulations, and communities. Web supplement with R code and data.