Publication

Manuscripts under review/revision


査読付原著論文 (Peer-reviewed papers)

[46]     ShirouzuT, Suzuki TK, Matsuoka S, Takamatsu S (2024)  Evolutionary dependence of host type and chasmothecial appendage morphology in obligate plant parasites belonging to Erysipheae (powdery mildew, Erysiphaceae).  Mycologia (online first).  [Open access]

[45]     Fukasawa Y, Pouska V, Bače R, Zíbarová L, Kawasaki Y, Matsuoka S, Sato H, Orman O, Král K, Svoboda M. (2024)  Bark beetle outbreaks in Picea abies stands are associated with changes in wood-inhabiting fungal communities and seedling establishment on logs. Fungal Ecology 68: 101328.

[44]      Naka M, Masumoto S, Nishizawa K, Matsuoka S, Tatsumi S, Kobayashi Y, Suzuki KF, Xu X, Kawakami T, Katayama N, Makoto K, Okada K, Uchida M, Takagi K, Mori AS. (2024) Long-term consequences on soil fungal community structure: Monoculture planting and natural regeneration. Environmental Management 73: 777-787.

[43]    Sugiyama Y, Matsuoka S, Shimono Y, Ushio M, Doi H. (2024)  Does water fungal environmental DNA assemblage reflect the surrounding terrestrial sporocarp community? Fungal Ecology 67: 101311.

[42]     Kadowaki K, Honjo M, Nakamura N, Kitagawa Y, Ishihara MI, Matsuoka S, Tachiki Y, Fukushima K, Sakaguchi S, Miizuki I, Fujiki D, Sakai M, Takayanagi A, Yamasaki M, Tokuchi Na, Takahashi D, Nagasawa K, Masuda K. (2023)  eDNA metabarcoding analysis reveals the consequence of creating ecosystem-scale refugia from deer grazing for the soil microbial communities. Environmental DNA 5: 1732-1742. [Open access]

[41]     Masumoto S,  Mori AS, Nishizawa K, Naka M, Matsuoka S, Wong S, Uchida M, (2023)  Synergistic effects of succession and microtopography of moraine on the fungal spatial diversity in a glacier forefield. FEMS Microbiology Ecology 99: fiad090

[40]     Doi H*, Matsuoka S*, Matsuzaki SS*, Nagano M, Sato H, Yamanaka H, Matsuhashi S, Yamamoto S, Minamoto T, Araki H,  Ikeda K, Kato A, Kumei K, Maki N, Mitsuzuka T, Takahara T, Toki K, Ueda N, Watanabe T, Yamazoe K, Miya M. (2023) Effects of species traits and ecosystem characteristics on species detection by eDNA metabarcoding in lake fish communities. Freshwater Biology  68: 146-1358. [preprint] bioRxiv 2020.09.25.314336   * equal contribution

[39]     Masumoto S, Kitagawa R, Kaneko R, Nishizawa K, Matsuoka S, Uchida M, Mori AS (2023)  Discrepancies of fungi and plants in the pattern of beta-diversity with environmental gradient imply a comprehensive community assembly rule. FEMS Micobiology Ecology: fiac157

[38]     Matsuoka S, Hatano Y, Osono T (2022)  [data article] Distribution and functional data of fungal families.  Ecological Research 37: 670-675

[37]     Matsuoka S, Sugiyama Y, Nagano M, Doi H. (2022) Influence of DNA extraction kits on freshwater fungal DNA metabarcoding. PeerJ 10:e13477. [Open access]

[36]     ShirouzuT, Suzuki TK, Matsuoka S, Takamatsu S (2022) Evolutionary patterns of host type and chasmothecial appendage morphology in obligate plant parasites belonging to Cystotheceae (powdery mildew, Erysiphaceae), Mycologia 114: 35-45, DOI: 10.1080/00275514.2021.1983352

[35]     Osono T, Matsuoka S, Hirose D. (2021) Diversity and host recurrence of fungi associated with the bleached leaf litter in a subtropical forest. Fungal Ecology 54: 101113 

[34]     Sugiyama Y, Matsuoka S, Osono T.  (2021) The ectomycorrhizal fungal communities react differently to climatic, edaphic and spatial variables depending on their host species.  Journal of Biogeography 48: 2550-2561.

[33]     Masumoto S, Kitagawa R, Nishizawa K, Kaneko R, Osono T, Hasegawa M, Matsuoka S, Uchida M, Mori AS (2021)  Functionally explicit partitioning of plant β-diversity reveal soil fungal assembly in the subarctic tundra. FEMS Micobiology Ecology 97: fiab129 

[32]    Matsuoka S, Sugiyama Y, Shimono Y, Ushio M, Doi H. (2021) Evaluation of seasonal dynamics of fungal DNA assemblages in a flow-regulated stream in a restored forest using eDNA metabarcoding. Environmental Microbiology 23: 4797-4806. [preprint] https://doi.org/10.1101/2020.12.10.420661

[31]      Nakao R, Inui R, Akamatsu Y, Goto M, Matsuoka S, Doi H. (2021) Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding. Scientific Reports 11: 15763.  [Open access]

[30]     Tatsumi S*, Matsuoka S*, Fujii S, Makoto K, Osono T, Isbell F, Mori AS. (2021) Prolonged impacts of past agriculture and ungulate overabundance on soil fungal communities in restored forests. Environmental DNA 3: 930-939.  [Open access] * equal contribution

[29]     Osono T, Hirose D, Matsuoka S (2021) Variability of decomposing ability among fungi associated with the bleaching of subtropical leaf litter. Mycologia 113: 703-714.

[28]     Doi H*, Inui R*, Matsuoka S*, Akamatsu Y, Goto M, Kono T. (2021) Estimation of biodiversity metrics by environmental DNA metabarcoding compared with visual and capture surveys of river fish communities. Freshwater Biology 66: 1257-1266.  [preprint] bioRxiv  10.1101/617670 * equal contribution

[27]     Matsuoka S, Doi H, Masumoto S, Kitagawa R, Nishizawa K, Tanaka K, Hasegawa M, Hobara S, Osono T, Mori AS, Uchida M.  (2021) Taxonomic, functional, and phylogenetic diversity of fungi in a forest-tundra ecotone in Québec. Polar Science 27: 100594.

[26]     Masumoto S, Kitagawa R, Nishizawa K, Osono T, Hasegawa M, Iimura Y, Matsuoka S Kaneko R, Uchida M, Mori AS (2021)  Integrative assessment of the effects of shrub coverage on soil respiration in a tundra ecosystem. Polar Science 27: 110562. 

[25]     Suetsugu K, Matsuoka S, Shutoh K. Okada H,  Taketomi S, Onimaru K, Tanabe AS, Yamanaka H. (2021) Mycorrhizal communities of two closely related species, Pyrola subaphylla and P. japonica, with contrasting degrees of mycoheterotrophy in a sympatric habitat. Mycorrhiza 31: 219-229. 

[24]     Osono T, Matsuoka S, Hirose D. (2020) Diversity and geographic distribution of ligninolytic fungi associated with Castanopsis sieboldii leaf litter in Japan. Frontiers in Microbiology 11:595427. [Open access]

[23]     Sugiyama Y, Matsuoka S, Osono T (2020) Two-years of investigation revealed the inconsistency of seasonal dynamics of an ectomycorrhizal fungal community in Japanese cool-temperate forest across years. FEMS Microbiology Ecology 96: fiaa118 .

[22]     Matsuoka S, Kobayashi Y, Hobara S, Osono T (2020) Identifying microbial drivers promoting plant growth on soil amended with composted aquatic plant: insight into nutrient transfer from aquatic to terrestrial systems. Limnology 21: 443–452.

[21]     Matsuoka S, Fujinaga S, Kobayashi Y, Hobara S, Osono T (2020) Bacterial 16S rDNA and alkaline phosphatase gene diversity in soil applied with composted aquatic plants. Limnology 21: 357–364.

[20]     Nakadai R, Okazaki Y, Matsuoka S (2020) Describing macroecological patterns in microbes: Approaches for comparative analyses of operational taxonomic unit read number distribution with a case study of global oceanic bacteria. Environmental DNA 2: 535-543. [Open access]

[19]     Shirouzu T, Matsuoka S, Doi H, Nagata N, Ushio M, Hosaka K (2020) Complementary molecular methods reveal a comprehensive phylogenetic diversity with integrating invisible lineages of early-diverged mushrooms. Scientific Reports 10: 3057. [Open access]

[18]     Matsuoka S, Sugiyama Y, Tateno R, Imamura S, Kawaguchi E, Osono T (2020) Evaluation of host effects on ectomycorrhizal fungal community compositions in a forested landscape in northern Japan. Royal Society Open Science 7: 191952. [Open access]

[17]     Matsuoka S, Iwasaki T, Sugiyama Y, Kawaguchi E, Doi H, Osono T (2019) Biogeographic patterns of ectomycorrhizal fungal communities associated with Castanopsis sieboldii across the Japanese archipelago. Frontiers in Microbiology 10:2656. [Open access]

[16]     Matsuoka S, Ogisu Y, Sakoh S, Hobara S, Osono T (2019) Taxonomic, functional, and phylogenetic diversity of fungi along primary successional and elevational gradients near Mount Robson, British Columbia. Polar Science 21: 165-171

[15]     Matsuoka S, Sugiyama Y, Sato H, Katano I, Harada K, Doi H (2019) Spatial structure of fungal DNA assemblages revealed with eDNA metabarcoding in a forest river network in western Japan. Metabarcoding and Metagenomics 3: e36335 [Open access]

[14]     Fujii K, Doi H, Matsuoka S, Nagano M, Sato H, Yamanaka H (2019) Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods. PLoS ONE 14(1): e0210357.  [Open access]

[13]     Matsuoka S, Suzuki Y, Hobara S, Osono T. (2018) Fungal succession and decomposition of composted aquatic plants applied to soil.  Fungal Ecology 35: 34-41 

[12]     Ushio M, Aiba S-I, Takeuchi Y, IIda Y, Matsuoka S, Repin R, Kitayama K. (2017) Plant-soil feedbacks and the dominance of conifers in a tropical montane forest in Borneo. Ecological Monographs 87(1): 105-129. [Open access]

[11]     Fujii S, Mori AS, Koide D, Makoto K, Matsuoka S, Osono T, Isbell F. (2017) Disentangling relationships between plant diversity and decomposition processes under forest restoration. Journal of Applied Ecology 54: 80-90.

[10]     Hirose D, Hobara S, Matsuoka S, Kato K, Tanabe Y,  Uchida M, Kudoh S, OsonoT. (2016) Diversity and community assembly of moss-associated fungi in ice-free coastal outcrops of continental Antarctica. Fungal Ecology 24:94-101.

[9]     Matsuoka S, Kawaguchi E, Osono T. (2016) Temporal distance decay of similarity of ectomycorrhizal fungal community composition in a subtropical evergreen forest in Japan. FEMS Microbiology Ecology 92: fiw061. [FREE]

[8]     Matsuoka S, Mori AS, Kawaguchi E, Hobara S, Osono T. (2016) Disentangling the relative importance of host tree community, abiotic environment, and spatial factors on ectomycorrhizal fungal assemblages along an elevation gradient. FEMS Microbiology Ecology 92: fiw044. [FREE]

[7]     Mori AS, Isbell F, Fujii S, Makoto K, Matsuoka S, Osono T. (2016) Low multifunctional redundancy of soil fungal diversity at multiple scales. Ecology Letters 19: 249-259.

[6]     Fukasawa Y, Matsuoka S. (2015) Communities of wood-inhabiting fungi in dead pine logs along a geographical gradient in Japan. Fungal Ecology 18: 75-82.

[5]     Mori A, Shiono T, Haraguchi TF, Ota A, Koide D, Ohgue T, Kitagawa R, Maeshiro R, Aung TT, Nakamori T, Hagiwara Y, Matsuoka S, Ikeda A, Hishi T, Hobara S, Mizumachi E, Frisch A, Thor G, Fujii S, Osono T Gustafsson L. (2015) Functional redundancy of multiple forest taxa along an elevational gradient: predicting the consequences of non-random species loss. Journal of Biogeography 42: 1383-1396.

[4]     Hagiwara Y, Matsuoka S, Hobara S, Mori AS, Hirose D, Osono T. (2015) Bleaching of leaf litter and associated fungi in subboreal and subalpine forests. Canadian Journal of Microbiology 61: 735-743.

[3]     Osono T, Matsuoka S, Hirose D, Uchida M, Kanda H. (2014) Fungal colonization and decomposition of leaves and stems of Salix arctica on deglaciated moraines in high-Arctic Canada. Polar Science 8: 207-216.

[2]     Ikeda A, Matsuoka S, Masuya H, Mori AS, Hirose D, Osono T. (2014) Comparison of the diversity, composition, and host recurrence of xylariaceous endophytes in subtropical, cool temperate, and subboreal regions in Japan. Population Ecology 56: 289-300.

[1]     Hirose D, Matsuoka S, Osono T. (2013) Assessment of the fungal diversity and succession of ligninolytic endophytes in Camellia japonica leaves using clone library analysis. Mycologia 105 (5): 837-843.

書籍等 (Books and Book Chapters)

その他の出版物 (Other publications)