All this seamlessly in 3-Dimensions and from within the Imaris platform.
The Immune Atlas plugin is now at version 2.0, and is now fully integrated with Imaris.
Fill out the short form to obtain the download consisting of a Zip file called ImmuneAtlas.zip, containing 2 files (ImmuneAtlasCell2VasculatureNearestDistance.m and ImmuneAtlasLogo.jpg), which both need to reside in the same directory, the path to which has to be added to the CustomTools section of the Preferences in Imaris.
The following publication should be referenced upon use:
For more information about how to install and run XTensions in Imaris, please refer to:
The Bitplane tutorial on how to enable ImageJ/Fiji and MATLAB plugins in Imaris.
The Imaris Reference Manual accessible via the Help menu in Imaris.
The Imaris Open forum at http://open.bitplane.com.
Immune Atlas was developed in MATLAB® (The MathWorks, Inc., Natick, MA) and runs embedded in Imaris (Bitplane, Zurich, Switzerland) under any operating system supporting MATLAB and Imaris, notably Windows and Mac OS X.
Immune Atlas is freely available for non-commercial use under the GNU General Public License.
Immune Atlas is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
Immune Atlas is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.