You can also check out all our publications from Pubmed, Google Scholar.
* corresponding author(s)
+ co-first author(s)
2024
Single-cell RNA sequencing of peripheral blood links cell-type-specific regulation of splicing to autoimmune and inflammatory diseases. Tian C, Zhang Y, Tong..., (as part of the Asian Immune Diversity Atlas (AIDA) ),..., Prabhakar S, Liu B. Nat Genet. 2024 Dec;56(12):2739-2752. doi: 10.1038/s41588-024-02019-8.
Prostaglandin E2-EP2/EP4 signaling induces immunosuppression in human cancer by impairing bioenergetics and ribosome biogenesis in immune cells. Punyawatthananukool S, Matsuura R, Wongchang T, Katsurada N, Tsuruyama T, Tajima M, Enomoto Y, Kitamura T, Kawashima M, Toi M, Yamanoi K, Hamanishi J, Hisamori S, Obama K, Charoensawan V, Thumkeo D, Narumiya S. Nat Commun. 2024 Nov 1;15(1):9464. doi: 10.1038/s41467-024-53706-3.
Quantification of escape from X chromosome inactivation with single-cell omics data reveals heterogeneity across cell types and tissues. Tomofuji Y,..., (as part of the Asian Immune Diversity Atlas (AIDA) ),..., Okada Y. Cell Genom. 2024 Aug 14;4(8):100625. doi: 10.1016/j.xgen.2024.100625.
Single-cell RNA sequencing reveals the expansion of circulating tissue-homing B cell subsets in secondary acute dengue viral infection. Arora JK, Matangkasombut P, Charoensawan V*, Opasawatchai A*; DENFREE Thailand. Heliyon. 2024 Apr 26;10(10):e30314. doi: 10.1016/j.heliyon.2024.e30314.
Identification of candidate genes for salt tolerance at seedling stage in rice using QTL-Seq and chromosome segment substitution line-derived population. Leawtrakun J, Aesomnuk W, Khanthong S, Dumhai R, Songtoasesakul D, Phosuwan S, Nuanpirom J, Charoensawan V, Siangliw J, Ruanjaichon V, Toojinda T, Wanchana S, Siangliw M, Siwaret Arikit, Identification of candidate genes for salt tolerance at seedling stage in rice using QTL-Seq and chromosome segment substitution line-derived population. Agronomy. 2024 14(5), 929.
Identification of RNF213 as a Potential Suppressor of Local Invasion in Intrahepatic Cholangiocarcinoma. Chiablaem K, Jinawath A, Nuanpirom J, Arora JK, Nasaree S, Thanomchard T, Singhto N, Chittavanich P, Suktitipat B, Charoensawan V, Chairoungdua A, Jinn-Chyuan Sheu J, Kiyotani K, Svasti J, Nakamura Y, Jinawath N. Lab Invest. 2024 May 7;104(7):102074. doi: 10.1016/j.labinv.2024.102074.
Comparative quantitative trait loci analysis framework reveals relationships between salt stress responsive phenotypes and pathways. Phosuwan S, Nounjan N, Theerakulpisut P, Siangliw M*, Charoensawan V*. Front Plant Sci. 2024 Feb 23;15:1264909. doi: 10.3389/fpls.2024.1264909.
2023
Characterizing Different Modes of Interplay between Rap1 and H3 using Inducible H3-depletion Yeast. Khamwachirapithak P, Guillaume-Schoepfer D, Chansongkrow P,Khamwachirapithak P, Guillaume-Schoepfer D, Chansongkrow P, Teichmann SA*, Wigge PA*, Charoensawan V*. J Mol Biol. 2023 Nov 5:168355. doi: 10.1016/j.jmb.2023.168355.
Predicting the impact of sequence motifs on gene regulation using single-cell data. Hepkema J, Lee NK, Stewart BJ, Ruangroengkulrith S, Charoensawan V, Clatworthy MR, Hemberg M. Genome Biol. 2023 Aug 15;24(1):189. doi: 10.1186/s13059-023-03021-9.
Computational workflow for investigating highly variable genes in single-cell RNA-seq across multiple time points and cell types. Arora JK, Opasawatchai A, Teichmann SA*, Matangkasombut P*, Charoensawan V*. STAR Protoc. 2023 Jun 27;4(3):102387. doi: 10.1016/j.xpro.2023.102387.
2022
Machine learning applications for transcription level and phenotype predictions. Chantaraamporn J, Phumikhet P, Nguantad S, Techo T,* Charoensawan V*. IUBMB Life. 2022 Dec;74(12):1273-1287. doi: 10.1002/iub.2693.
PGE2-EP2/EP4 signaling elicits immunosuppression by driving the mregDC-Treg axis in inflammatory tumor microenvironment. Thumkeo D, Punyawatthananukool S, Prasongtanakij S, Matsuura R, Arima K, Nie H, Yamamoto R, Aoyama N, Hamaguchi H, Sugahara S, Takeda S, Charoensawan V, Tanaka A, Sakaguchi S, Narumiya S. Cell Rep. 2022 Jun 7;39(10):110914. doi: 10.1016/j.celrep.2022.110914.
Antisense Oligonucleotide Induction of the hnRNPA1b Isoform Affects Pre-mRNA Splicing of SMN2 in SMA Type I Fibroblasts. Toosaranont J, Ruschadaariyachat S, Mujchariyakul W, Arora JK, Charoensawan V, Suktitipat B, Palmer TN, Fletcher S, Wilton SD, Mitrpant C. Int J Mol Sci. 2022 Apr 1;23(7):3937. doi: 10.3390/ijms23073937.
Single-cell transcriptomic profiling of human dental pulp in sound and carious teeth: a pilot study Opasawatchai A*, Nguantad S, Sriwilai B, Matangkasombut P, Matangkasombut O, Srisatjaluk R, Charoensawan V*. Front Dent Med 2, 93, https://doi.org/10.3389/fdmed.2021.806294
Editorial: Multi-Disciplinary Approaches to Plant Responses to Climate Change. Charoensawan V*, Cortijo S, Domijan M, Negrão S. Front Plant Sci. 2022 Mar 16;13:876432. doi: 10.3389/fpls.2022.876432.
Single-cell temporal analysis of natural dengue infection reveals skin-homing lymphocyte expansion one day before defervescence. Arora JK, Opasawatchai A, Poonpanichakul T, Jiravejchakul N, Sungnak W; DENFREE Thailand, Matangkasombut O, Teichmann SA*, Matangkasombut P*, Charoensawan V*. iScience. 2022 Mar 5;25(4):104034. doi: 10.1016/j.isci.2022.104034.
Large-scale comparative transcriptomic analysis of temperature-responsive genes in Arabidopsis thaliana. Sriden N, Charoensawan V*. Plant Mol Biol. 2022 Nov;110(4-5):425-443. doi: 10.1007/s11103-021-01223-y.
2021
Capturing tumour heterogeneity in pre- and post-chemotherapy colorectal cancer ascites-derived cells using single-cell RNA-sequencing. Poonpanichakul T, Shiao MS, Jiravejchakul N, Matangkasombut P, Sirachainan E, Charoensawan V*, Jinawath N*. Biosci Rep. 2021 Dec 22;41(12):BSR20212093. doi: 10.1042/BSR20212093.
Exploring PIF4 's contribution to early flowering in plants under daily variable temperature and its tissue-specific flowering gene network. Jenkitkonchai J, Marriott P, Yang W, Sriden N, Jung JH, Wigge PA, Charoensawan V*. Plant Direct. 2021 Jul 16;5(7):e339. doi: 10.1002/pld3.339.
Innate Lymphoid Cells Activation and Transcriptomic Changes in Response to Human Dengue Infection. Poonpanichakul T, Chan-In W, Opasawatchai A, Loison F, Matangkasombut O, Charoensawan V, Matangkasombut P; DENFREE Thailand. Front Immunol. 2021 May 17;12:599805. doi: 10.3389/fimmu.2021.599805.
High Quality Aspergillus aculeatus Genomes and Transcriptomes: A Platform for Cellulase Activity Optimization Toward Industrial Applications. Mhuantong W, Charoensri S, Poonsrisawat A, Pootakham W, Tangphatsornruang S, Siamphan C, Suwannarangsee S, Eurwilaichitr L, Champreda V, Charoensawan V*, Chantasingh D*. Front Bioeng Biotechnol. 2021 Jan 27;8:607176. doi: 10.3389/fbioe.2020.607176.