1. Y. Wu, L. Ma, S. Cheley, H. P. Bayley, Q. Cui, and E. Chapman, Permeation of Styryl Dyes through Nanometer-Scale Pores in Membranes, Biochemistry, 50, 7493-7502 (2011)
2. L. Ma, N. Sundlass, R. T. Raines, and Q. Cui, Disruption and Formation of Surface Salt Bridges Are Coupled to DNA Binding by the Integration Host Factor: A Computational Analysis, Biochemistry, 50, 266-275 (2011)
3. L. Ma, L. Pegram, M. T. Record, Jr., and Q. Cui, Preferential Interactions between Small Solutes and the Protein Backbone: A Computational Analysis, Biochemistry, 49, 1954-1962 (2010)
4. L. Ma, A. Yethiraj, X. Chen, and Q. Cui, A Computational Framework for Mechanical Response of Macromolecules: Application to the Salt Concentration Dependence of DNA Bendability, Biophysical Journal, 96, 3543-3554 (2009)
5. H. Yu, Y. Yang, L. Ma, and Q. Cui, Mechanochemical Coupling in Molecular Motors: Insights from Molecular Simulations of the Myosin Motor Domain, in Proteins: Energy, Heat and Signal Flow, Eds. D. M. Leitner and J. E. Straub, CRC Press (2009)
6. A. W. van Wynsberghe, L. Ma, X. Chen, and Q. Cui, Functional Motions in Biomolecules: Insights from Computational Studies at Multiple Scales, in Computational Structural Biology, Eds. T. Schwede and M. Peitsch, pp. 253-297, World Scientific (2008)
7. L. Ma and Q. Cui, Activation Mechanism of a Signaling Protein at Atomic Resolution from Advanced Computations, Journal of the American Chemical Society, 129, 10261-10268 (2007)
8. H. Yu, L. Ma, Y. Yang, and Q. Cui, Mechanochemical Coupling in the Myosin Motor Domain. II. Analysis of Critical Residues, PLoS Computational Biology, 3, 0214-0230 (2007)
9. H. Yu, L. Ma, Y. Yang, and Q. Cui, Mechanochemical Coupling in the Myosin Motor Domain. I. Insights from Equilibrium Active-Site simulations, PLoS Computational Biology, 3, 0199-0213 (2007)
10. L. Ma and Q. Cui, The Temperature Dependence of Salt-Protein Association Is Sequence Specific, Biochemistry, 45, 14466-14472 (2006)
11. M. S. Formaneck, L. Ma, and Q. Cui, Effects of Temperature and Salt Concentration on the Structural Stability of Human Lymphotactin: Insights from Molecular Simulations, Journal of the American Chemical Society, 128, 9506-9517 (2006)
12. M. S. Formaneck, L. Ma, and Q. Cui, Reconciling the "Old" and "New" Views of Protein Allostery: A Molecular Simulation Study of Chemotaxis Y Protein (CheY), Proteins: Structure, Function, and Bioinformatics, 63, 846-867 (2006)
13. P. Wei, K. Fan, H. Chen, L. Ma, C. Huang, L. Tan, D. Xi, C. Li, Y. Liu, A. Cao, and L. Lai, The N-terminal octapeptide acts as a dimerization inhibitor of SARS coronavirus 3C-like proteinase, Biochemical and Biophysical Research Communication, 339, 865-872 (2006)
14. K. Fan, L. Ma, X. Han, H. Liang, P. Wei, Y. Liu, and L. Lai, The substrate specificity of SARS coronavirus 3C-like proteinase, Biochemical and Biophysical Research Communication, 329, 934-940 (2005)
15. K. Fan, P. Wei, F. Qian, S. Chen, C. Huang, L. Ma, B. Lai, J. Pei, Y. Liu, J. Chen, and L. Lai, Biosynthesis, Purification, and Substrate Specificity of Severe Acute Respiratory Syndrome Coronavirus 3C-like Proteinase, Journal of Biological Chemistry, 279, 1637-1642 (2004)