Publications

PhD Thesis

      Humayun Irshad, "Automated Mitosis Detection in Color and Multi-spectral High-Content Images in Histopathology: Application to Breast Cancer Grading in Digital Pathology", University Joseph Fourier, Grenoble 1, France.

Intellectual Property

1.  H. Irshad, L. Roux, D. Racoceanu, "MitosisDetector - Mitosis Detector for Histopathology", Copyright CNRS (CNRS Statement Software) No. DL 05963-01 for 2955 IPAL UMI, 2013.

   1. “CExPath - Method for improved diagnosis of neoplastic lesions by integrating Expansion Pathology (ExPath) with advanced computational image analysis”, H. Irshad, A. H. Beck, O. Bucur, Y. Zhao, E. S. Boyden, Patent submitted in USA.

             Journals

1. Y. Zhao*, O. Bucur*, H. Irshad, F. Chen, A. Weins, A.L. Stancu, E.Y. Oh, A.H. Beck, E.S. Boyden, “Expansion Pathology”, Nature Biotechnology 2017.

2. H. Irshad, E.Y. Oh, D. Schomolze, L.M. Quintana, L. Collins, R. M. Tamimi, A.H. Beck, “Crowdsourcing scoring of immunohistochemistry images: Evaluating Performance of the Crowd and an Automated Computational Method”, Scientific Reports 2017.

   1. F. Dong, H. Irshad, E. Oh, et. al., "Computational Pathology to Discriminate Benign from Malignant IntraductalProliferations of the Breast", PLoS ONE Vol. 9 (12), Dec. 2014.

3. H. Irshad, A. Gouaillard, L. Roux, D. Racoceanu, "Multispectral Band Selection and Spatial Characterization: Application to Mitosis Detection in Breast Cancer Histopathology", in Computerized Medical Imaging and Graphics (CMIG), Jun. 2014, vol. 38, issue 5, pp.390-402. (DOI: http://dx.doi.org/10.1016/j.compmedimag.2014.04.003) 

4. H. Irshad, A. Veillard, L. Roux, D. Racoceanu, "Methods for Nuclei Detection, Segmentation and Classification in Digital Histopathology: A Review. Current Status and Future Potential", in IEEE Reviews on Biomedical Engineering (RBME), Apr. 2014, vol. 7, pp. 97-114. (DOI: http://dx.doi.org/10.1109/RBME.2013.2295804)

5. H. Irshad, I. Hassan, J. Iqbal, A. R. Aghdam, M. Kamalpour, "m-Health System Support For LHWs Working in Rural Areas", in Journal Science International-Lahore, Jul. - Sept. 2013, vol. 25, issue 3, pp. 653-655. 

6. H. Irshad, "Automated Mitosis Detection in Histopathology using Morphological and Multi-channel Statistics Features", in Journal of Pathology Informatics, May 2013, vol. 4, issue 1, pp. 10. (DOI: http://www.jpathinformatics.org/text.asp?2013/4/1/10/112695)

• 1. L. Roux, D. Racoceanu, N. Loménie, M. Kulikova, H. Irshad, J. Klossa, F. Capron, C. Genestie, G. L. Naour, M. N. Gurcan, "Mitosis detection in breast cancer histological images An ICPR 2012 contest", in Journal of Pathology Informatics, May 2013, vol. 4, issue 1, pp. 8. (DOI: http://www.jpathinformatics.org/text.asp?2013/4/1/8/112693)

7. H. Irshad, S. Jalali, L. Roux, D. Racoceanu, L. J. Hwee, G. L. Naour, F. Capron, "Automated Mitosis Detection using Texture, SIFT Features and HMAX Biologically Inspired Approach", in Journal of Pathology Informatics, Mar. 2013, vol. 4, issue 2, pp. 12. (DOI: http://www.jpathinformatics.org/text.asp?2013/4/2/12/109870)

Technical White Paper (pubmed Indexed)

1. H. Irshad, S. Rigaud, A. Gouaillard, "Primal/Dual Mesh with Application to Triangular / Simplex Mesh and Delaunay / Voronoi", in Insight Journal, Jan. - Dec. 2012. (DOI: http://hdl.handle.net/10380/3392)

Peer-reviewed International Conference

1. H. Irshad, Montaser-Kouhsari, G Waltz, O Bucur, J A Nowak, F Dong, N W Knoblauch, A H Beck, "Crowdsourcing Image Annotation for Nucleus Detection and Segmentationin Computational Pathology: Evaluating Experts, Automated Methods, and the Crowd", Pacific Symposium on Biocomputing (PSB), The Big Island of Hawaii,  3-8 Jun, 2015.

2. H. Irshad, "Automated Mitosis Detection in Color and Multi-spectral High-Content Images in Histopathology: Application to Breast Cancer Grading in Digital Pathology", 12th European Congress of Digital Pathology, Paris, France, 18-22 Jun, 2014. 

3. H. Irshad, A. Gouaillard, L. Roux, D. Racoceanu, "Spectral Band Selection for Mitosis Detection in Histopathology", in IEEE 11th International Symposium on Biomedical Imaging (ISBI), Beijing, China, Apr-Mar, 2014, pp. 1279-1282. (DOI: http://dx.doi.org/10.1109/ISBI.2014.6868110) , Poster Download

4. H. Irshad, L. Roux, D. Racoceanu, "Multi-channels Statistical and Morphological Features based Mitosis Detection in Breast Cancer Histopathology", in Proc. of 35th International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Osaka, Japan, Jul., 2013, pp. 6091-6094. (DOI: http://dx.doi.org/10.1109/EMBC.2013.6610942), (Presentation Download)

5. H. Irshad, L. Roux, O. Morère, D. Racoceanu, G. L. Naour, and F. Capron, "Détection automatique et calcul du compte de mitoses sur lamesH&E", in Recherche en Imagerie et Technologies pour la Santé (RITS), Bordeaux, France, Apr., 2013. (Presentation Download)

6. H. Irshad, L. Roux, D. Racoceanu, "Multi-channelStatistics Features based Mitosis Detection in Histopathology", in International Workshop on Pattern Recognition and Healthcare Analytics, 21st Inter. Conf. on Pattern Recognition (ICPR), Tsukuba, Japan, Nov., 2012. (Poster Download)

7. H. Irshad, S. Jalali, L. Roux, D. Racoceanu, L. J. Hwee, G. L. Naour, F. Capron, "Automated Mitosis Detection Using Texture, SIFTFeatures and HMAX Biologically Inspired Approach", in Workshop on Histopathology Image Analysis, 15th Inter. Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI), Nice, France, Oct., 2012. (Poster Download)

   1. S. Naz, H. Irshad, H. Majeed, "Image Segmentation using Fuzzy Clustering: A Survey", in Proc. of IEEE Inter. Conf. on Emerging Technologies, Islamabad, Pakstan, Oct., 2010, pp. 181-186. (DOI: http://dx.doi.org/10.1109/ICET.2010.5638492)

8. H. Irshad, S. Athar, F. Shahzad, M. Farooq, "M-HealthSystem with focus on Antenatal Care for Rural Areas", in First Inter. Conf. on eHealth (e-HAP), Karachi, Pakistan, Jan., 2010. (Presentation Download)

9. H. Irshad, S. Athar, F. Shahzad, A. Bashir, F. Jehan, "OnThe Move Ultrasound Diagnosis on Mobile", in First Inter. Conf. on eHealth (e-HAP), Karachi Pakistan, Jan., 2010. (Presentation Download)

• 1. J. Afridi, M. Kamran, H. Irshad, S. Khan, M. Farooq, "Use of CDSS on the Personal Digital Assistant of theMedical Expert", in First Inter. Conf. on eHealth (e-HAP), Jan. 2010. (Presentation Download)

10. H. Irshad, M. Kamran, A. B. Siddiqui, A. Hussain, "Image Fusion using Computational Intelligence: ASurvey", in Proc. of IEEE Second Inter. Conf. on Environment and Computer Science, Dubai, UAE, Dec. 2009, pp. 128-132. (DOI: http://dx.doi.org/10.1109/ICECS.2009.77)

Abstracts and Presentations

1. F Beca*, H Irshad*, DL Weaver, JG Elmore, AH Beck, “Computational image analysis of breast biopsy with atypia – Through the looking glass of diagnostic concordance among pathologists”, Abstract presented at USCAP 2016 and published in Laboratory Investigation 96, 32A-32A, 2016.

2. O Bucur*, H Irshad*, LM Kouhsari, NW Knoblauch, EY Oh, J Nowak, AH Beck, “3Dmorphological hallmarks of breast carcinogenesis: diagnosis of non-invasive andinvasive breast cancer with Lightsheet Microscopy”, Abstract presented at AACR 2015 and published in Cancer Research 75(15 supplement):3477-3477, 2015.