AlphaPhase1.1
AlphaPhase1.1 is a software package for phasing genotype data which uses long range phasing and haplotype library imputation methodology.
AlphaPhase1.1 replaces the original AlphaPhase and is much faster.
The download folder contains Linux, Windows, and Mac executables as well as the manual and a suite of examples.
Download
The user manual is also available here. Download
The paper describing the method is available here. Download
AlphaPhase is not an explicit imputation program, for imputation it is best to use AlphaImpute. Click here
Your also welcome to try our Gibbs sampler for estimating effects. Click here