AlphaImpute
A beta test version is available via email from John Hickey.
AlphaImpute is a software package for imputing and phasing genotype data in populations with pedigree information. AlphaImpute combines long range phasing with segregation analysis and haplotype library imputation (SAHLI) methodology to impute alleles and genotypes.
Linux and Mac OSX executables, example files, background publications on the method and a user manual are available for download.
The software, manual and examples are available here:
For OSX: For the moment a beta test version is available via email
For Linux: For the moment a beta test version is available via email
The manual is available here. Download.
Your also welcome to try our Gibbs sampler for estimating effects. Click here