Evolutionary epidemiology of infectious diseases group in Paris:
Méril Massot, postdoctoral researcher. Molecular epidemiology of E. coli.
Frith Edbrooke, PhD student. Epidemiology and evolution of antibioresistance in E. coli.
Rafika Amia, engineer. Epidemiology and evolution of E. coli.
Owais Ahmad, engineer. Epidemiology and evolution of E. coli.
Former members:
Naouel Merad, master's student 2025. Epidemiology and evolution of E. coli.
Jules Baldous, master's student 2025. Epidemiology and evolution of E. coli.
Octave Frances, bachelor's student 2025. Modelling the co-evolution of resistance and virulence in bacteria.
Thibaut Morel Journel, postdoctoral researcher. Epidemiology and evolution of E. coli. Now assistant professor (Maitre de conférences) Université Sorbonne Paris Nord.
Clarisse Figueroa, engineer. Epidemiology and evolution of E. coli. Now on parental leave.
Aurore Picot, postdoctoral researcher. Epidemiology and evolution of E. coli.
Jasmine Gamblin, PhD student, co-supervised with Amaury Lambert. Modelling the stochastic dynamics of adaptation and pangenome evolution. Now postdoctoral researcher.
Loréna Duret, master's student 2022. Epidemiology and phylodynamics of SARS-CoV-2.
Pete Czuppon, now assistant professor. Evolutionary rescue and antibiotic resistance.
Olivier Cotto, now INRAE researcher. Modelling antibioresistance in a structured population.
Audrey Duval, now data engineer. Epidemiology of SARS-CoV-2.
Julie Marin, now assistant professor (Maître de Conférences) Université Sorbonne Paris Nord.
Antoine Belloir, master's student 2020. Modelling the epidemiological dynamics of SARS-CoV-2.
Elif Elçin, master's student 2020, co-supervised with Julie Marin. Dynamics of the E. coli accessory genome.
Eliott Jacopin, master's student 2018, co-supervised with Florence Débarre.
Collaborators in Paris:
Florence Débarre, evolutionary rescue and antibiotic resistance.
Olivier Tenaillon, adaptation of E. coli.
Erick Denamur, adaptation of E. coli.
Amaury Lambert, selection and genome evolution.
Jérémie Guedj, SARS-CoV-2 dynamics.
Main collaborators elsewhere:
Sonja Lehtinen, modelling the evolution of bacteria, University of Lausanne, Switzerland.
Bich Vu, dynamics and adaptation of E. coli in Vietnam, Oxford University Clinical Research Unit, Hanoi, Vietnam.
Christophe Fraser and the evolutionary epidemiology team at the Big Data Institute, University of Oxford, United Kingdom.
Thomas Bataillon, fitness landscape models and the dynamics of adaptation. University of Aarhus, Denmark.
Sylvain Gandon, evolutionary epidemiology. CNRS Montpellier, France.
Scott Nuismer, evolutionary biology and host parasite interactions. University of Idaho, USA.