Group and collaborators

Evolutionary epidemiology of infectious diseases group in Paris:

Thibaut Morel Journel, postdoctoral researcher. Epidemiology and evolution of E. coli.

Aurore Picot, postdoctoral researcher. Epidemiology and evolution of E. coli.

Jasmine Gamblin, PhD student, co-supervised with Amaury Lambert. Modelling the stochastic dynamics of adaptation and pangenome evolution.

Clarisse Figueroa, engineer. Epidemiology and evolution of E. coli.

Rafika Amia, engineer. Epidemiology and evolution of E. coli.

Former members:

Loréna Duret, master's student 2022. Epidemiology and phylodynamics of SARS-CoV-2.

Pete Czuppon, now assistant professor. Evolutionary rescue and antibiotic resistance.

Olivier Cotto, now INRAE resercher. Modelling antibioresistance in a structured population.

Audrey Duval, now data engineer. Epidemiology of SARS-CoV-2.

Julie Marin, now assistant professor (Maître de Conférences) Université Sorbonne Paris Nord.

Antoine Belloir, master's student 2020. Modelling the epidemiological dynamics of SARS-CoV-2.

Elif Elçin, master's student 2020, co-supervised with Julie Marin. Dynamics of the E. coli accessory genome.

Eliott Jacopin, master's student 2018, co-supervised with Florence Débarre.

Collaborators in Paris:

Florence Débarre, evolutionary rescue and antibiotic resistance.

Olivier Tenaillon, adaptation of E. coli.

Erick Denamur, adaptation of E. coli.

Amaury Lambert, selection and genome evolution.

Jérémie Guedj, SARS-CoV-2 dynamics.

Collaborators elsewhere:

Sonja Lehtinen, modelling the evolution of antibiotic resistance, ETH Zurich, Switzerland.

Christophe Fraser and the evolutionary epidemiology team at the Big Data Institute, University of Oxford, United Kingdom.

Thomas Bataillon, fitness landscape models and the dynamics of adaptation. University of Aarhus, Denmark.

Sylvain Gandon, evolutionary epidemiology. CNRS Montpellier, France.

Scott Nuismer, evolutionary biology and host parasite interactions. University of Idaho, USA.