Publications
Embedded Files
Submitted
Submitted
"Hidden dormant phase mediating the glass transition in disordered media", Eunyoung Park , Sinwoo Kim , Melody Wang , Junha Hwang , Sung Yun Lee , Jaeyong Shin , Seung-Phil Heo , Jungchan Choi , Heemin Lee , Dogeun Jang , Minseok Kim , Kyung Sook Kim , Sangsoo Kim , Intae Eom , Daewoong Nam , Wendy Gu, and Changyong Song. (https://arxiv.org/abs/2411.02691)
"Photoinduced surface plasmon control of ultrafast melting modes in Au nanorods", Eunyoung Park, Chulho Jung, Junha Hwang, Jaeyong Shin, Sung Yun Lee, Heemin Lee, Seung-Phil Heo, Daewoong Nam, Sangsoo Kim, Min Seok Kim, Kyung Sook Kim, In Tae Eom, Do Young Noh, and Changyong Song. (https://arxiv.org/abs/2409.15877)
2025
2025
98. "Review Article:Time-resolved probing of laser-induced nanostructuring processes in liquids", Maximilian Spellauge, David Redka, Mianzhen Mo*, Changyong Song*, Heinz Paul Huber*, and Anton Plech*, Beilstein J. Nanotechnol. 16:968 (2025).
97. "Frustrated phonon with charge density wave in vanadium Kagome metal", Seung-Phil Heo, Choongjae Won, Heemin Lee, Hanbyul Kim, Eunyoung Park, Sung Yun Lee, Junha Hwang, Hyeongi Choi, Sang-Youn Park, Byungjune Lee, Woo-Suk Noh, Hoyoung Jang, Jae-Hoon Park, Dongbin Shin*, and Changyong Song*, Nat. Commun. 16:4861 (2025). [PDF]
96. "Deep-learning real-time phase retrieval of imperfect diffraction patterns from X-ray free-electron lasers", Sung Yun Lee, Do Hyung Cho, Chulho Jung, Daeho Sung, Daewoong Nam, Sangsoo Kim, and Changyong Song*, npj Comput. Mater. 11:68 (2025). [PDF]
95. "Electronic Melting of Silicon in Nanostructures using X‑ray Forbidden Bragg Reflections", Ian Robinson*, David Yang, Longlong Wu, Hyunjung Kim, Sung Soo Ha, Sungwook Choi, Changyong Song, Junha Hwang, Seung‑Phil Heo, Jaeku Park, Intae Eom, Sunam Kim, J. Electron. Mater. 54:5051 (2025). [PDF]
94. "Development of the Nanobeam X-ray Experiments instrument at PAL-XFEL", Jangwoo Kim, HyoJung Hyun, Seonghan Kim, Sun Min Hwang, Myong-Jin Kim, Dogeun Jang, Kyung Sook Kim, Jaeyong Shin, Sejin Kim, Junha Hwang, Sung Yun Lee, Eunyoung Park, Sangsoo Kim, Intae Eom, Changyong Song and Daewoong Nam*, J. Synchrotron Radiat. 32:466 (2025). [PDF]
2024
2024
93. "Off-axis X-ray vortex beam ptychography", Sung Yun Lee, Eunyoung Park, Sinwoo Kim, Euije Jo, Su Yong Lee, Jun Woo Choi, and Changyong Song*, ACS Photonics 11:3804 (2024). [PDF]
92. "Inverted nucleation for photoinduced nonequilibrium melting", Junha Hwang, Yungok Ihm, Daewoong Nam, Jaeyong Shin, Eunyoung Park, Sung Yun Lee, Heemin Lee, Seung-Phil Heo, Sangsoo Kim, Je Young Ahn, Ji Hoon Shim, Minseok Kim, Intae Eom, Do Young Noh, and Changyong Song*, Sci. Adv. 10:eadl6409 (2024). [PDF]
91. "Development of the multiplex imaging chamber at PAL-XFEL", Junha Hwang, Sejin Kim, Sung Yun Lee, Eunyoung Park, Jaeyong Shin, Jae Hyuk Lee, Myong-jin Kim, Seonghan Kim, Sang-Youn Park, Dogeun Jang, Intae Eom, Sangsoo Kim, Changyong Song, Kyung Sook Kim*, and Daewoong Nam*, J. Synchrotron Radiat. 31:469 (2024). [PDF]
2023
2023
90. "Emergence of liquid following laser melting of gold thin films", Ian K. Robinson*, Jack P. Griffiths, Robert Koch, Tadesse A. Assefa, Ana F. Suzana, Yue Cao, Sungwon Kim, Dongjin Kim, Heemin Lee, Sunam Kim, Jae Hyuk Lee, Sang-Youn Park, Intae Eom, JaeHyun Park, Daewoong Nam, Sangsoo Kim, Sae Hwan Chun, Hyojung Hyun, Kyung-Sook Kim, Ming Lu, Changyong Song, Hyunjung Kim, Simon J. L. Billinge, and Emil S. Bozina, IUCrJ 10:656 (2023). [PDF]
89. "Nanoscale three-dimensional network structure of a mesoporous particle unveiled via adaptive multidistance coherent X-ray tomography", Sung Yun Lee, Do Hyung Cho, Sung Chan Song, Jaeyong Shin, Junha Hwang, Eunyoung Park, Su Yong Lee, Seongseop Kim, Jinwoo Lee, and Changyong Song*, ACS Nano 17:22488 (2023). [PDF]
88. "Observing femtosecond orbital dynamics in ultrafast Ge melting with time-resolved resonant X-ray scattering", Heemin Lee, Je Young Ahn, Sae Hwan Chun, Do Hyung Cho, Daeho Sung, Chulho Jung, Jaeyong Shin, Junha Hwang, Sung Soo Ha, Hoyoung Jang, Byeong-Gwan Cho, Sunam Kim, Jaeku Park, Daewoong Nam, Intae Eom, Ji Hoon Shim, Do Young Noh, Yungok Ihm*, and Changyong Song*, IUCrJ 10:700 (2023). [PDF]
87. "Compressive effects in melting of palladium thin films studied by ultrafast x-ray diffraction", Ana F. Suzana, Robert Koch, Longlong Wu, Tadesse A Assefa, Sungwon Kim, Sungwook Choi, Heemin Lee, Sunam Kim, Jae Hyuk Lee, Sang-Youn Park, Daewoong Nam, Sangsoo Kim, Hyojung Hyun, Kyung Sook Kim, Gwen Wright, Emil S. Bozin, Changyong Song, Hyunjung Kim, Simon J. L. Billinge, and Ian K. Robinson, Phys. Rev. B 107:214303 (2023). [PDF]
86. "Ultrafast energy transfer process in confined Au nanospheres revealed by femtosecond X-ray imaging and diffraction", Jaeyong Shin, Chulho Jung, Yungok Ihm, Seung-Phil Heo, Daewoong Nam, Sangsoo Kim, Minseok Kim, Intae Eom, Ji Hoon Shim, Do Young Noh, and Changyong Song*, Nano Letters 23:1481 (2023). [PDF]
2022
2022
85. "Three dimensional quantitative coherent diffraction imaging of Staphylococcus aureus treated with peptide-mineralized Au cluster probes", Tangmeng Li, Bo He, Xiangchun Zhang, Jiadong Fan, Liang Gao, Zhibin Sun, Jianhua Zhang, Amin Guo, Dan Pan, Xianzhen Yin, Yajun Tong, Changyong Song, Yoshiki Kohmura, Makina Yabashi, Tetsuya Ishikawa, Xueyun Gao, and Huaidong Jiang, Anal. Chem. 94:13136 (2022). [PDF]
84. "Quantitative analysis of the effect of radiation on mitochondria structure using coherent diffraction imaging with a clustering algorithm", Dan Pan, Jiadong Fan, Zhenzhen Nie, Zhibin Sun, Jianhua Zhang, Yajun Tong, Bo He, Changyong Song, Yoshiki Kohmura, Makina Yabashi, Tetsuya Ishikawa, Yuequan Shen, and Huaidong Jiang, IUCrJ 9:223 (2022). [PDF]
83. "Characterization of photoinduced normal state through charge density wave in superconducting YBa2Cu3O6.67", Hoyoung Jang, Sanghoon Song, Takumi Kihara, Yijin Liu, Sang-Jun Lee, Sang-Youn Park, Minseok Kim, Hyeong-Do Kim, Giacomo Coslovich, Suguru Nakata, Yuya Kubota, Ichiro Inoue, Kenji Tamasaku, Makina Yabashi, Heemin Lee, Changyong Song, Hiroyuki Nojiri, Bernhard Keimer, Chi-Chang Kao, and Jun-Sik Lee, Sci. Adv. 8:eabk0832 (2022). [PDF]
2021
2021
82. "Inducing thermodynamically blocked atomic ordering via strongly driven nonequilibrium kinetics", C. Jung, Y. Ihm, D.-H. Cho, H. Lee, D. Nam, S.-S. Kim, I.-T. Eom, J. Park, C. Kim, Y. Kim, J. Fan, N. Ji, J. R. Morris, S. Owada, K. Tono, J-H Shim, H. Jiang, M. Yabashi, T. Ishikawa, D.-Y. Noh, and C. Song*, Sci. Adv. 7:eabj8552 (2021). [PDF]
81. "Denoising low intensity diffraction signals using k-space deep learning: Applications to phase recovery", Sung Yun Lee, Do Hyung Cho, Chulho Jung, Daeho Sung, Daewoong Nam, Sangsoo Kim, and Changyong Song*, Phys. Rev. Res. 3:043066 (2021). [PDF]
80. "Stochastic chromatin packing of 3D mitotic chromosomes revealed by coherent X-rays", Daeho Sung, Chan Lim, Masatoshi Takagi, Chulho Jung, Heemin Lee, Do Hyung Cho, Jae-Yong Shin, Kangwoo Ahn, Junha Hwang, Daewoong Nam, Yoshiki Kohmura, Tetsuya Ishikawa, Do Young Noh, Naoko Imamoto, Jae-Hyung Jeon*, and Changyong Song*, Proc. Natl. Acad. Sci. 118:e2109921118 (2021). [PDF]
79. "Single-shot coherent X-ray imaging instrument at PAL-XFEL", Daeho Sung, Daewoong Nam, M. Kim, S. Kim, K.S. Kim, S.-Y. Park, S. M. Hwang, C. Jung, H. Lee, D. Cho, M. Kim, I. Eom, S. Y. Lee, C. Song, and Sang Soo Kim*, App. Sci. 11:5082 (2021). [PDF]
78. "High-Throughput 3D Ensemble Characterization of Individual Core-Shell Nanoparticles With X-ray Free Electron Laser Single-Particle Imaging", Do Hyung Cho, Zhou Shen, Yungok Ihm, Dae Han Wi, Chulho Jung, Daewoong Nam, Sangsoo Kim, Sang-Youn Park, Kyung Sook Kim, Daeho Sung, Heemin Lee, Jae-Yong Shin, Junha Hwang, Sung Yun Lee, Su Yong Lee, Sang Woo Han, Do Young Noh, N. Duane Loh*, and Changyong Song*, ACS Nano 15:4066 (2021). [PDF]
2020
2020
77. "Oxidation-induced three dimensional morphological changes in Ni nanoparticles observed by coherent X-ray diffraction imaging", Kangwoo Ahn, In Hwa Cho, Junhyung Kim, Su Young Lee, Daeho Sung, Chulho Jung, Changyong Song, Hyon Chol Kang and Do Young Noh*, J. Synchrotron Radiat. 28:505 (2021). [PDF]
76. "Structure investigation of single specimens with femtosecond X-ray laser: Routes to signal-to-noise ratio enhancements", C. Jung, D. Nam, J. Hwang, D. Sung, D. Cho. H. Lee, S. Kim, K. Tono, M. Yabashi, T. Ishikawa, D.-Y Noh and C. Song*, Phys. Rev. Applied 13:064045 (2020). [PDF]
75. "Megahertz single-particle imaging at the European XFEL", Egor Sobolev, Sergei Zolotarev, Klaus Giewekemeyer, Johan Bielecki, Kenta Okamoto, Hemanth K. N. Reddy, Jakob Andreasson, Kartik Ayyer, Imrich Barak, Sadia Bari, Anton Barty, Richard Bean, Sergey Bobkov, Henry N. Chapman, Grzegorz Chojnowski, Benedikt J. Daurer, Katerina Dörner, Tomas Ekeberg, Leonie Flückiger, Oxana Galzitskaya, Luca Gelisio, Steffen Hauf, Brenda G. Hogue, Daniel A. Horke, Ahmad Hosseinizadeh, Vyacheslav Ilyin, Chulho Jung, Chan Kim, Yoonhee Kim, Richard A. Kirian, Henry Kirkwood, Olena Kulyk, Jochen Küpper, Romain Letrun, N. Duane Loh, Kristina Lorenzen, Marc Messerschmidt, Kerstin Mühlig, Abbas Ourmazd, Natascha Raab, Andrei V. Rode, Max Rose, Adam Round, Takushi Sato, Robin Schubert, Peter Schwander, Jonas A. Sellberg, Marcin Sikorski, Alessandro Silenzi, Changyong Song, John C. H. Spence, Stephan Stern, Jolanta Sztuk-Dambietz, Anthon Teslyuk, Nicusor Timneanu, Martin Trebbin, Charlotte Uetrecht, Britta Weinhausen, Garth J. Williams, P. Lourdu Xavier, Chen Xu, Ivan A. Vartanyants, Victor S. Lamzin, Adrian Mancuso & Filipe R. N. C. Maia*, Commun. Phys. 3:97 (2020). [PDF]
74. "Ultrafast x-ray diffraction study of melt-front dynamics in polycrystalline thin films", T. A. Assefa, Y. Cao, Soham Banerjee, Sungwon Kim, Dongjin Kim, Heemin Lee, Sunam Kim, Jae Hyuk Lee, Sang-Youn Park, Intae Eom, Jaeku Park, Daewoong Nam, Sangsoo Kim, Sae Hwan Chun, Hyojung Hyun, Kyung sook Kim, Pavol Juhas, Emil S. Bozin, Ming Lu, Changyong Song, Hyunjung Kim, Simon J. L. Billinge and Ian K. Robinson*, Sci. Adv. 6:eaax2445 (2020). [PDF]
73. "Characterizing intrinsic property of individual XFEL pulses via single-particle diffractions", H. Lee, J. Shin, D. Cho, C. Jung, D. Sung, K. Ahn, D. Nam, S-S. Kim, K-S. Kim, S.-Y. Park, J. Fan, H. Jiang, H.-C. Kang, K. Tono, M. Yabashi, T. Ishikawa, D.-Y. Noh, and C. Song*, J. Synchrotron Radiat. 27:17 (2020). [PDF]
2019
2019
72. "Comparing the spatial coherence of the natural and focused X-rays from a free electron laser", Do Hyung Cho, Jiseok Yang, Daewoong Nam, Sangsoo Kim, Sunam Kim, Jaehyun Park, Kensuke Tono, Makina Yabashhi, Tetsuya Ishihkawa and Changyong Song*, Opt. Exp. 27:19573(2019). [PDF]
71. "Direct observation of picosecond melting and disintegration of metallic nanoparticles", Y. Ihm, D. Cho, D. Sung, D. Nam, T. Sato, C. Jung, S-S. Kim, J. Park, S-N. Kim, M. Gallagher-Jones, Y. Kim, R. Xu, S. Owada, J. H. Shim, K.Tono, M. Yabashi, T. Ishikawa, J. Miao, D.-Y. Noh, and C. Song*, Nat. Commun. 10:2411 (2019). [PDF]
70. "Coherence and pulse duration characterization of the PAL-XFEL in the hard X-ray regime", Kyuseok Yun, Sungwon Kim, Dongjin Kim, Myungwoo Chung, Wonhyuk Jo, Hyerim Hwang, Daewoong Nam, Sangsoo Kim, Jangwoo Kim, Sang-Youn Park, Kyung Sook Kim, Changyong Song, Sooheyong Lee & Hyunjung Kim*, Sci. Rep. 5:3300 (2019). [PDF]
2018
2018
69. "Atomic level three-dimensional structure of individual particles with XFELs", Changyong Song*, IUCrJ 5:522 (2018). [PDF]
68. "Necessary experimental conditions for single-shot diffraction imaging of DNA-based structures with X-ray free-electron lasers", Zhibin Sun, Jiadong Fan, Haoyuan Li, Huajie Liu, Daewoong Nam, Chan Kim, Yoonhee Kim, Yubo Han, Jianhua Zhang, Shengkun Yao, Jaehyun Park, Sunam Kim, Kensuke Tono, Makina Yabashi, Tetsuya Ishikawa, Changyong Song, Chunhai Fan, and Huaidong Jiang*, ACS Nano 12:7509 (2018). [PDF]
67. "Imaging magnetic structures of quasicrystal magnets using resonant coherent diffraction of circularly polarized X-rays", Daeho Sung, Chulho Jung, Byeong-Gwan Cho, Wonhyuk Jo, Hee-Sung Han, Ki-Suk Lee, Vinayak Bhat, Barry Farmer, L. E. De Long, Ki Bong Lee, D. J. Keavney, Dong Ryeol Lee and Changyong Song*, Nanoscale 10:13159 (2018). [PDF]
66. "Single-shot 3D coherent diffractive imaging of core-shell nanoparticles with elemental specificity", Alan Pryor Jr, Arjun Rana, Rui Xu, Jose, Rodriguez, Yongsoo Yang, Marcus Gallagher-Jones, Huaidong Jiang, Krishan Kanhaiya, Michael Nathanson, Jaehyun Park, Sunam Kim, Sangsoo Kim, Daewoong Nam, Yu Yue, Jiadong Fan, Zhibin Sun, Bosheng Zhang, Dennis F. Gardner Carlos Sato Baraldi Dias, Yasumasa Joti, Takaki Hatsui, Takashi Kameshima, Yuichi Inubushi, Kensuke Tono, imYang Lee, Makina Yabashi, Changyong Song, Tetsuya Ishikawa,Henry C. Kapteyn, Margaret M.Murnane, Hendrik Heinz, Jianwei Miao*, Sci. Rep. 8:8284 (2018). [PDF]
2017
2017
65. "Nanosecond pump-probe device for time-resolved serial femtosecond crystallography developed at SACLA", M. Kubo*, E. Nango, K. Tono, T. Kimura, S. Owada, C. Song, M. Mafune, K. Miyajima, Y. Takeda, J. Khono, N. Miyauchi, T. Nakane, T. Tanaka, T. Nomura, J. Davidsson, R. Tanaka, M. Murata, T. Kameshima, T. Hatsui, Y. Joti, R. Neutze, M. Yabashi and S. Iwata, J. Synchrotron Radiat. 24:1086 (2017). [PDF]
64. "Three-dimensional reconstruction for coherent diffraction patterns obtained by XFEL", M. Nakano, O. Miyashita, S. Jonic, C. Song, D. Nam, Y. Joti and F. Tama*, J. Synchrotron Radiat. 24:727 (2017). [PDF]
63. "Coherent soft X-ray diffraction imaging of caliphate PR772 at the LCLS", H. Reddy, et al., Sci. Data 4:170079 (2017). [PDF]
62. "Visualization of a Mammalian Mitochondrion by Coherent X-ray Diffractive Imaging", Y. Kim, C. Kim, O. Kwon, D. Nam, S.-S. Kim, J. Park, S.-N. Kim, M. Gallagher-Jones, Y. Kohmura, T. Ishikawa, C. Song, G. Tae, and D.- Y. Noh*, Sci. Rep. 7:1850 (2017). [PDF]
61. "Hydroxyethyl cellulose matrix applied to serial crystallography", M. Sugahara*, T. Nakane, T. Masuda, M. Suzuki, S. Inoue, C. Song, R. Tanaka, T. Nakatsu, E. Mizohata, F. Yumoto, K. Tono, Y. Joti, T. Kameshima, T. Hatsui, M. Yabashi, O. Nureki, K. Numata, E. Nango, and So Iwata, Sci. Rep. 7:703 (2017). [PDF]
60. "Atomic resolution structure of serine protease proteinase K at ambient temperature", T. Masuda, M. Suzuki, S. Inoue, C. Song, T. Nakane, E. Nango, R. Tanaka, K. Tono, Y. Joti, T. Kameshima, T. Hatsui, M. Yabashi, B. Mikami, O. Nureki, K. Numata, So Iwata, and M. Sugahara*, Sci. Rep. 7:45604 (2017). [PDF]
2016
2016
59. "A three-dimensional movie of structural changes in bacteriorhodopsin", E. Nango, A Royant, M. Kubo, T. Nakane,C. Wickstrand, T.i Kimura, T. Tanaka, K. Tono, C. Song, R. Tanaka, T. Arima, A. Yamashita, J. Kobayashi, T. Hosaka, E. Mizohata, P. Nogly, M. Sugahara, D. Nam, T. Nomura, T. Shimamura, D. Im, T. Fujiwara, Y. Yamanaka, B. Jeon, T. Nishizawa, K. Oda, M. Fukuda, R. Andersson, P. Båth, R. Dods, J. Davidsson, S. Matsuoka, S. Kawatake, M. Murata, O. Nureki, S. Owada, T. Kameshima, T. Hatsui, Y. Joti, G. Schertler, M. Yabashi, A-N. Bondar, J. Standfuss, R. Neutze* and S. Iwata*, Science 354:1552 (2016). [PDF]
58. "Single pulse enhanced coherent diffraction imaging of bacteria with an X-ray free electron laser", J. Fan, Z. Sun, Y. Wang. J. Park, S-N. Kim, M. Gallagher-Jones, Yoonhee Kim, C. Song, S. Yao, J. Zhang, X. Duan, K. Tono, M. Yabashi, T. Ishikawa, C. Fan, Y. Zhao, Z. Chai, X. Gao, T. Earnest and H. Jiang*, Sci. Rep. 6:34008 (2016).[PDF]
57. "Enhancing resolution of coherent X-ray diffraction imaging", Do Young Noh*, Chan Kim, Yoonhee Kim & C. Song, J. Phys. Cond. Mat. 28:493001 (2016).[PDF]
56. "Coherent diffraction of single rice dwarf virus particles using hard X-rays at the LCLS", A. Munke, et al., Sci. Data 3:160064 (2016). [PDF]
55. "Oil-free hyaluronic acid matrix for serial femtosecond crystallography", M. Sugahara*, C. Song, M. Suzuki, T. Masada, S. Inoue, T. Nakane, F. Yumoto, E. Nango, R. Tanaka, K. Tono, Y. Joti, T. Kameshima, T. Hatsui, M. Yabashi, O. Nureki, K. Numata & S. Iwata, Sci. Rep. 6:24484 (2016) [PDF].
54. "Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography", Y. Fukuda, K-M. Tse, T. Nakane, T. Nakatsu, M. Suzuki, M. Sugahara, S. Inoue, T. Masuda, F. Yumoto, N. Matsugaki, E. Nango, K. Tono, Y. Joti, T. Kameshima, C. Song, T. Hatsui, M. Yabashi, O. Nureki, M. E. O. Murphy, T. Inoue, S. Iwata, & E. Mizohata*, Proc. Natl. Acad. Sci. 113:2928 (2016). [PDF]
53. "Design of a hard X-ray beamline and end-station for pump and probe experiments at Pohang Accelerator Laboratory X-ray Free Electron Laser facility", J. Park, I. Eom, T.-H. Kang, S. Rah, K.-H. Nam, J. Park, S. Kim, S. Kwon, S.-H. Park, K.-S. Kim, H. Hyun, S.-N. Kim, E.-H. Lee, H. Shin, S. Kim, M.-J. Kim, H.-J. Shin, D. Ahn, J. Lim, C.-J. Yu, C. Song, H. Kim, D.-Y. Noh, , H.-S. Kang, B. Kim, K.-W. Kim, I.-S. Ko, M.-H. Cho, & S. Kim*, Nucl. Instruments Methods Phys. Res. Sect. A 810:74 (2016). [PDF]
52. "Fixed Target Single-shot Imaging using Thin Solid Membranes at SACLA", D. Nam, C. Kim, Y. Kim, T. Ebisu, M. Gallagher-Jones, J. Park, S-N. Kim, S.-S. Kim, K. Tono, D.-Y. Noh, M. Yabashi, T. Ishikawa & C. Song*, XFEL Special Issue: J. Phys. B: At. Mol. Opt. Phys. 49:034008 (2016). [PDF]
51. "Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography", Y. Fukuda, K-M. Tse, T. Nakane, T. Nakatsu, M. Suzuki, M. Sugahara, S. Inoue, T. Masuda, F. Yumoto, N. Matsugaki, E. Nango, K. Tono, Y. Joti, T. Kameshima, C. Song, T. Hatsui, M. Yabashi, O. Nureki, M. E. O. Murphy, T. Inoue, S. Iwata, & E. Mizohata*, J. Biochem. 159:527 (2016) [PDF]
2015
2015
50. "Native sulfur/chlorine SAD phasing for serial femtosecond crystallography", T. Nakane, C. Song, M. Suzuki, E. Nango, J. Kobayashi, T. Masuda, S. Inoue, E. Mizohata, T. Nakatsu, T. Tanaka, R. Tanaka, T. Shimamura, K. Tono, Y. Joti, T. Kameshima, T. Hatsui, M. Yabashi, O. Nureki, S. Iwata and M. Sugahara*, Acta Cryst. D 71:2519 (2015). [PDF]
49. "Towards single particle imaging of human chromosomes at SACLA", I. Robinson*, J. Schwenke, M. Yusuf, A. Estandarte, F. Zhang, B. Chen, J. Clark, C. Song, D. Nam, Y. Joti, K. Tono, M. Yabashi, G. Ratnasari, K. Kaneyoshi,H. Takata and K. Fukui, XFEL Special Issue: J. Phys. B: At. Mol. Opt. Phys. 48:244007 (2015). [PDF]
48. "An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography", K. Yamashita, D. Pan, T. Okuda, M. Sugahara, A. Kodan, T. Yamaguchi, T. Murai, K. Gomi, N. Kajiyama, E. Mizohata, M. Suzuki, E. Nango, K. Tono, Y. Joti, T. Kameshima, J. Park, C. Song, T. Hatsui, M. Yabashi, S. Iwata, H. Kato, H. Ago, M. Yamamoto, and T. Nakatsu*, Sci. Rep. 5:14017 ( 2015). [PDF]
47. "Three-dimensional coherent X-ray diffraction imaging of a whole, frozen-hydrated cell", J. A. Rodriguez, R. Xu, C.-C. Chen, Z. Huang, H. Jiang, K. S. Raines, D. Nam, A. L. Chen, A. P. J. Pryor, L. Wiegart, C. Song, A. Madsen, Y. Chushkin, F. Zontone, P. J. Bradley, and J. Miao*, IUCrJ 2:575 (2015). [PDF]
46. "Diverse application platform for hard X-ray diffraction in SACLA (DAPHNIS): application to serial protein crystallography using X-ray free-electron laser", K. Tono, E. Nango, M. Sugahara, C. Song, J. Park, T. Tanaka, R. Tanaka, Y. Joti, T. Kameshima, S. Ono, T. Hatsui, E. Mizohata, M. Suzuki, T. Shimamura, Y. Tanaka, S. Iwata & M. Yabashi*, J. Synchrotron Radiat. 22:532 (2015). [PDF]
45. "Direct observation of gold-gold bond formation in solution with femtosecond X-ray scattering", K. H. Kim, J. G. Kim, S. Nozawa, T. Sato, K. Y. Oang, T. W. Kim, H. Ki, J. Jo, S. Park, C. Song, T. Sato, K. Ogawa, T. Togashi, K. Tono, M. Yabashi, T. Ishikawa, J. Kim, R. Ryoo, J. Kim, H. Ihee* & S. Adachi*, Nature 518:385 (2015). [PDF]
44. "Grease matrix as a versatile carrier of proteins for serial crystallography", M. Sugahara*, E. Mizohata, E. Nango, M. Suzuki, T. Tanaka, T. Masuda, R. Tanaka, T. Shimamura, Y. Tanaka, C. Suno, K. Ihara, D. Pan, K. Kakinouchi, S. Sugiyama, M. Murata, T. Inoue, K. Tono, C. Song, J. Park, T. Kameshima, T. Hatsui, Y. Joti, M. Yabashi, and S. Iwata, Nat. Methods 12:61 (2015). [PDF]
~ 2014
~ 2014
43. “Analytic 3D imaging of mammalian nucleus at nanoscale using coherent x-rays and optical fluorescence microscopy”, C. Song*, M. Takagi, J. Park, R. Xu, M. Gallagher-Jones, N. Imamoto, and T. Ishikawa, Biophys. J. 107:1074 (2014). [PDF]
42. “Resolution enhancement in coherent x-ray diffraction imaging by overcoming instrumental noise”, C. Kim, Y-H Kim, C. Song, S.-S. Kim, S-N. Kim, H. C. Kang, Y. Hwu, K-D. Tsuei, K. Liang, and D. Noh*, Optics Express 22:29162 (2014). [PDF]
41. “Single-shot 3D structure determination of nanocrystals with femtosecond X-ray free electron laser pulses”, R. Xu, H. Jiang, C. Song, J. A. Rodriguez, Z. Huang, C.-C. Chen, D. Nam, J. Park, M. Gallagher-Jones, S.-S. Kim, S.-N. Kim, A. Suzuki, Y. Takayama, T. Oroguchi, Y. Takahashi, J. Fan, Y. Zou, T. Hatsui, Y. Inubushi, T. Kameshima, K. Yonekura, K. Tono, T. Togashi, T. Sato, M. Yamamoto, M. Nakasako, M. Yabashi, T. Ishikawa, and J. Miao*, Nat. Commun. 5:4061 (2014). [PDF]
40. “Macromolecular structures probed by combining single-shot free-electron laser diffraction with synchrotron coherent x-ray imaging”, M. Gallagher-Jones, Y. Bessho, S.-N. Kim, J. Park, S.-S. Kim, D. Nam, C. Kim, Y.-H. Kim, D.-Y. Noh, O. Miyashita, F. Tama, Y. Joti, T. Kameshima, T. Hatsui, K. Tono, Y. Kohmura, M. Yabashi, S. Hasnain, T. Ishikawa, and C. Song*, Nat. Commun. 5:3798 (2014). [PDF]
39. “In vivo crystallography at X-ray free-electron lasers: the next generation of structural biology”, F. Gallat, N. Matsugaki, Y. Yamada, F. Yumoto, N. Coussens, K. Yagi, M. Boudes, T. Higashi, M. Suzuki, Y. Kitago, J. Takagi, E. Mizohata, Y. Morita, K. Oohora, T. Hayashi, T. Inoue, K. Tono, Y. Joti, T. Kameshima, J. Park, C. Song, T. Hatsui, M. Yabashi, E. Nango, R. Tanaka, K. Itoh, F. Coulibali, S. Tobe, S. Ramaswamy, S. Barbara, S. Iwata and L.Chavas*, Phil. Trans. R. Soc. B, 369:1647 (2014). [PDF]
38. “Imaging live cell in micro-liquid enclosure by X-ray laser diffraction”, T. Kimura, Y. Joti, A. Shibuya, C. Song, S. Kim, K. Tono, M. Yabashi, M. Tamakoshi, T. Moriya, T. Oshima, T. Ishikawa, Y. Bessho, and Y. Nishino*, Nat. Commun. 5:3052 (2014). [PDF]
37. “Multiple application X-ray imaging chamber in single-shot diffractions with femtosecond X-ray laser pulses”, C. Song*, K. Tono, J. Park, T. Ebisu, S-N. Kim, H. Shimada, S-S. Kim, M. Gallagher-Jones, D. Nam, T. Sato, T. Togashi, K. Ogawa, Y. Joti, T. Kameshima, S. Ono, T. Hatsui, S. Iwata, M. Yabashi and T. Ishikawa, J. Appl. Cryst. 47:188 (2014). [PDF]
36. “Monte Carlo study for optimal conditions in single-shot imaging with femtosecond x-ray laser pulses”, J. Park, Y. Joti, T. Ishikawa and C. Song*, Appl. Phys. Lett. 103:264101 (2013). [PDF]
35. “Development of an adaptable coherent x-ray diffraction microscope with the emphasis on imaging hydrated specimens”, D. Nam, J. Park, M. Gallagher-Jones, H. Shimada, S-S. Kim, S-N. Kim, Y. Kohmura, T. Ishikawa and C. Song*, Rev. Sci. Instrum. 84:113702 (2013). [PDF]
34. “Three dimensional coherent x-ray diffraction imaging of molten iron in mantle olivine at nanoscale resolution”, H. Jiang, R. Xu, C.-C. Chen, W. Yang, J. Fan, X. Tao, C. Song, Y. Kohmura, T. Ishikawa, W. Mao and J. Miao*, Phys. Rev. Lett. 110:205501 (2013). [PDF]
33. “Imaging fully hydrated whole cells by coherent x-ray diffraction microscopy”, D. Nam, J. Park, M. Gallagher-Jones, S.-S. Kim, S.-N. Kim, Y. Kohmura, H. Naitow, N. Kunishima, T. Yoshida, T. Ishikawa and C. Song*, Phys. Rev. Lett. 110:098103 (2013). [PDF]
32. “Coherent diffraction imaging and SACLA”, C. Song*, Hoshasenkagaku (Jap. Soc. Rad. Chem.) 96:15 (2013). [PDF]
31. “Assessment of Radiation Damage in Single-shot Coherent Diffraction of DNA Molecules by EUV-FEL”, J. Park, D. Nam, Y. Kohmura, M. Nagasono, Y. Jeon, J.-B. Lee, T. Ishikawa and C. Song*, Phys. Rev. E 86:042901(2012). [PDF]
30. “Coherent X-ray Diffraction Imaging”, J. Miao, R. L. Sandberg and C. Song, IEEE J. Sel. Topics in Quant. Electr. 18:399 (2011). [PDF]
29. “Coherent diffraction microscopy at SPring-8: instrumentation, data acquisition and data analysis”, R. Xu, S. Salha, K. S. Raines, H. Jiang, C.-C. Chen, Y. Takahashi, Y. Kohmura, Y. Nishino, C. Song, T. Ishikawa, and J. Miao, J. Synchrotron Radiat. 18:293 (2011). [PDF]
28. “Quantitative 3D imaging of whole, unstained cells by using X-ray diffraction microscopy”, H. Jiang, C. Song, C-C Chen, R. Xu, K. Raines, B. P. Fahimian, C.-H. Lu, T. K. Lee, A. Nakashima, J. Urano, T. Ishikawa, F. Tamanoi, and J. Miao, Proc. Natl. Acad. Sci. 107:11234 (2010). [PDF]
27. “EUV‐FEL diffraction imaging of nanostructures at SCSS”, J. Park, Y. Kohmura, and C. Song* (invited article), J. Jap. Soc. Syn. Rad. 23:325 (2010). [PDF]
26. “Quantitative imaging of single, unstained viruses with coherent X-rays”, C. Song*, H. Jiang, A. P. Mancuso, B. Amirbekian, L. Peng, R. Sun, S. S Shah, Z. H. Zhou, T. Ishikawa, and J. Miao, Phys. Rev. Lett. 101:158101 (2008). [PDF]
25. “Nanoscale imaging of buried structures with elemental specificity using resonant x-ray diffraction microscopy”, C. Song*, R. Bergstrom, D. Ramunno-Johnson, H. Jiang, D. Paterson, M. D. de Jonge, I. McNulty, J. Lee, K. Wang, and J. Miao, Phys. Rev. Lett. 100:025504 (2008). [PDF]
24. “High numerical aperture tabletop soft x-ray diffraction microscopy with 70 nm resolution”, R. L. Sandberg, C. Song, P. W. Wachulak, D. A. Raymondson, A. Paul, B. Amirbekian, E. Lee, A. E. Sakdinawat, M. C. Marconi, C. S. Menoni, M. M. Murnane, J. J. Rocca, H. C. Kapteyn, and J. Miao, Proc. Natl. Acad. Sci. 105:24 (2008). [PDF]
23. “Nanoscale imaging of mineral crystals inside biological composite materials using x-ray diffraction microscopy”, H. Jiang, D. Ramunno-Johnson, C. Song, B. Amirbekian, Y. Kohmura, Y. Nishino, Y. Takahashi, T. Ishikawa, and J. Miao, Phys. Rev. Lett. 100:038103 (2008). [PDF]
22. “Non-resonant and resonant X-ray scattering studies on multiferroic TbMn2O5”, J. Koo, C. Song, S. Ji, J.-S. Lee, J. Park, T.-H. Jang, C.-H. Yang, J.-H. Park, Y. H. Jeong, K.-B. Lee, T.Y. Koo, Y.J. Park, J.-Y. Kim, D. Wermeille, A.I. Goldman, G. Srajer, S. Park, and S.-W. Cheong, Phys. Rev. Lett. 99:197601 (2007). [PDF]
21. “Lensless diffractive imaging using tabletop, coherent, high harmonic soft x-ray beams”, R. L. Sandberg, A. Paul, D. A. Raymondson, S. Hadrich, D. M. Gaudiosi, J. Holtsnider, R. I. Tobey, O. Cohen, M. Murnane, H. C. Kapteyn, C. Song, J. Miao, Y. Liu, and F. Salmassi, Phys. Rev. Lett. 99:98103 (2007). [PDF]
20. “Resonant x-ray scattering study of quadrupole-strain coupling in DyB4”, S. Ji, C. Song, J. Koo, J. Park, Y.J. Park, K.-B. Lee, S. Lee, J. G. Park, J. Y. Kim, B. K. Cho, K.-P. Hong, C.-H. Lee, and F. Iga, Phys. Rev Lett. 99:076401 (2007). [PDF]
19. “Phase retrieval from exactly oversampled diffraction intensity through deconvolution”, C. Song*, D. Ramunno-Johnson, Y. Nishino, Y. Kohmura, C.-C. Chen, T.-K. Lee, T. Ishikawa, and J. Miao, Phys. Rev. B 75:0120102 (2007). [PDF]
18. “Three-dimensional GaN-Ga2O3 core-shell structure revealed by x-ray diffraction microscopy”, J. Miao, C.-C. Chen, C. Song, Y. Nishino, Y. Kohmura, T. Ishikawa, D. Ramunno-Johnson, T.-K. Lee, and S. H. Risbud, Phys. Rev. Lett. 97:215503 (2006). [PDF]
17. “Orbital ordering and enhanced magnetic frustration of strained BiMnO3 thin films”, C.-H. Yang, T. Y. Koo, S.-H. Lee, C. Song, K.-B. Lee, and Y. H. Jeong, Europhys. Lett. 74:348 (2006). [PDF]
16. “Resonant x-ray scattering study on multiferroic BiMnO3”, C.-H. Yang, J. Koo, C. Song, T. Y. Koo, K. B. Lee, and Y. H. Jeong, Phys. Rev. B 73:224112 (2006). [PDF]
15. “Quantitative image reconstruction of GaN quantum dot from oversampled diffraction intensities alone”, J. Miao, Y. Nishino, Y. Kohmura, B. Johnson, C. Song, S. Risbud, and T. Ishikawa, Phys. Rev. Lett. 95:85503 (2005). [PDF]
14. “Interference of magnetic and anisotropic tensor susceptibility reflections in resonant x-ray scattering of GdB4”, S. Ji, C. Song, J. Koo, K.-B. Lee, Y. J. Park, J. Y. Kim, J.-H. Park, H. J. Shin, J. S. Rhyee, B. H. Oh, and B. K. Cho, Phys. Rev. Lett. 91:257205 (2003). [PDF]
13. “Charge-density-wave orderings in LaAgSb2: An x-ray scattering study”, C. Song*, J. Park, J. Koo, K.-B. Lee, J. Y. Rhee, S. L. Bud'ko, P. C. Canfield, B. N. Harmon, and A. I. Goldman, Phys. Rev. B 68:035113 (2003). [PDF]
12. “Magnetic structure of GdAgSb2 determined by x-ray resonant exchange scattering”, C. Song*, W. Good, D. Wermeille, A. I. Goldman, S. L. Bud'ko, and P. C. Canfield, Phys. Rev. B 65:172415 (2002). [PDF]
11. “Analytic solution for finite linear chain with two general impurities under general boundary condition", J. S. Kim, K. H. Lee, and C. Y. Song, Physica B 316:178 (2002). [PDF]
10. “The electrical conductivity of single-grain Al-Pd-Re quasicrystals”, I. R. Fisher, X. P. Xie, I. Tudosa, C. W. Gao, C. Song, P. C. Canfield, A. Kracher, K. Dennis, D. Abanoz, and M. J. Kramer, Phil. Mag. B 82:1089 (2002). [PDF]
9. “Observation of a spin reorientation in TbCu2Ge2 from resonant and nonresonant x-ray scattering”, C. Song*, D. Johnson, D. Wermeille, A. I. Goldman, S. L. Bud'ko, I. R. Fisher, and P. C. Canfield, Phys. Rev. B 64:224414 (2001). [PDF]
8. “X-ray magnetic circular dichroism study of TbNi2B2C”, C. Song*, J. C. Lang, C. Detlefs, A. Létoublon, W. Good, J. Kim, D. Wermeille, S. L. Bud'ko, P. C. Canfield, and A. I. Goldman, Phys. Rev. B 64:R020403 (2001). [PDF]
7. “High-resolution resonant magnetic x-ray scattering on TbNi2B2C: Determination of the modulation wave vector in the orthorhombic phase”, C. Song*, D. Wermeille, A. I. Goldman, P. C. Canfield, J. Y. Rhee, and B. N. Harmon, Phys. Rev. B 63:104507 (2001). [PDF]
6. “The native oxide effects on the optical properties of TbFe2”, S. J. Lee and C. Song, Phys. Stat. Sol. A 186:487 (2001). [PDF]
5. “Yb14ZnSb11: Charge balance in Zintl compounds as a route to intermediate Yb valence”, I. R. Fisher, S. L. Bud'ko, C. Song, P. C. Canfield, T. C. Ozawa, and S. M. Kauzlarich, Phys. Rev. Lett. 85:1120-1123 (2000). [PDF]
4. “Effects of band filling on magnetic structures: The case of RNi2Ge2”, Z. Islam, C. Detlefs, C. Song, A. I. Goldman, V. Antropov, B. Harmon, S. L. Bud'ko, T. Wiener, P. C. Canfield, D. Wermeille, and K. D. Finkelstein, Phys. Rev. Lett. 83:2817 (1999). [PDF]
3. “Magnetostriction-induced tetragonal-to-orthorhombic phase transition in TbNi2B2C”, C. Song*, Z. Islam, L. Lottermoser, A. I. Goldman, P. C. Canfield, and C. Detlefs, Phys. Rev. B 60:6223 (1999). [PDF]
2. “CO-oxidation model with superlattice ordering of adsorbed oxygen. 1. Steady-state bifurcations”, E. W. Evans, C. Song, and J. W. Evans, J. Chem. Phys. 11:6579 (1999). [PDF]
1. “Dynamics of an one-dimensional lattice with two impurities under a general boundary condition”, H. S. Lee, C. Song, and K. H. Lee, J. Kor. Phys. Soc. 29:190 (1996). [PDF]
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