CV
Last Name: JOURDAN First Name: Fabien Date of Brith: April 18th 1978 Nationality: French
Current position: Directeur de Recherche 1ère Classe INRAE, Human nutrition division
Location: INRAE UMR1331 Toxalim, Equipe Métabolisme des Xénobiotiques (MeX)
180 chemin de Tournefeuille St-Martin-du-Touch, BP 3 31931 TOULOUSE CEDEX France
Phone: +33 (0)5 82 06 63 95 Mail: Fabien.Jourdan -at- inrae.fr Website: http://sites.google.com/site/fabienjourdan/
Orcid: orcid.org/0000-0001-9401-2894 WOS: AAW-5075-2021 id Hal: fabien-jourdan twitter: @metexplore
Academic positions
January 1st 2023/... INRAE Senior Research Scientist (DR1), TOXALIM, Toulouse.
January 1st 2021/... Director of French National Infrastructure of Metabolomics and Fluxomics (MetaboHub)
January 1st 2017/2022 INRAE Senior Research Scientist (DR2), TOXALIM, Toulouse.
September 1st 2010/December 31th 2016 INRA Research Scientist (CR1), TOXALIM, Toulouse.
September 1st 2005/August 31th 2009 INRA Research Scientist (CR2), TOXALIM, Toulouse.
September 1st 2006/August 31th 2007 Visiting Researcher. University of Glasgow.
September 1st 2004/August 31th 2005 Research Assistant, Université Montpellier 2.
Training
2015 HDR (Habilitation à Diriger des Recherches) "Bioinformatics methods to study metabolic network modulations." Université Paul Sabatier, Toulouse, France.
2004 Phd thesis "Information Visualization : graphical representations, structural indices, visual cues and navigation. Application to biological and social networks." Université Montpellier 2, France.
2001 MSc in Computer Science Université Montpellier 2, France. Master thesis on the visualization of large graphs.
1999 BSc in Computer Science Université Montpellier 2, France.
Rodríguez-Mier, et al. (2021). DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks. PLoS Computational Biology .
Poupin et al. (2020). Improving lipid mapping in Genome Scale Metabolic Networks using ontologies. Metabolomics.
Frainay et al. (2019). MetaboRank: network-based recommendation system to interpret and enrich metabolomics results. Bioinformatics,
Chazalviel et al. (2018). MetExploreViz: web component for interactive metabolic network visualization. Bioinformatics
Cottret et al. (2018). MetExplore: collaborative edition and exploration of metabolic networks. Nucleic Acids Research
Scientific animation
Elected member of the Board of Directors of the Metabolomics Society since 2019 and secretary since 2020.
Elected member of the administrative board of the french metabolomics and fluxomics network (RFMF), since 2010. President from 2015 to 2019.
Chair of first European Metabolomics conference in 2020
Organisator of Merlion Metabolomics Workshop Singapore 2014.
Co-leader of GDR BIM network modelling theme
Several trainings for scientists (e.g. RFMF, EMBO-EBI)
Projects
Coordinator (12 projects) :
2021-23 EU-Met ANR-MRSEI Metabolomics, infrastructure, networking. Total funding : 30 k€
2021-25 MetEx+ PIA Equipex+/ANR Metabolomics, Fluxomics, Bioinformatics. Total funding : 5,675 M€.
2020-23 MetCalssNet ANR-DFG Metabolomics, Bioinformatics. Total fundingl : 928 k€.
2020-24 MetaboHUB2.0 PIA 3/ANR Metabolomics, Fluxomics, Bioinformatics. Total funding : 2,900 M€.
2020-23 L’Oréal CIFRE-ANRT Bioinformatics, toxicology. Total funding : 40k€ + thèse CIFRE.
2019-22 ToxMining ANSES Toxicology, Bioinformatics. Total funding : 197 k€.
2017-20 MedDay Pharmaceuticals Collab. Health, Bioinformatics, Metabolism. Total funding : 30k€ + 24 mois IE.
2016-17 MOFO INRAE-DTN Bioinformatics, Metabolomics. Total funding : 11 k€.
2015 Seed project Ambassade UK Metabolomics, Fluxomics, Bioinformatics. Total funding : 10 k€.
2014-15 M-Diet INRAE-DID’IT Nutrition, Bioinformatics. Total funding: 10 k€.
2014 Merlion Workshop Ambassade Singapour Metabolomics, Fluxomics. Total funding : 25 k€.
2008-11 SysTryp ANR-BBSRC Parasitology, Bioinformatics, Metabolisme. Total funding : 800 k€.
Work package leader (4 projects) :
2021-24 Metalisabet ADEME Toxicology, Metabolomics, Bioinformatics. Budget total : 170 k€.
2019-23 MDM2 INCA Cancer, Metabolism, Bioinformatics. Budget total : 592 k€.
2019-23 GOLIATH H2020 Toxicology, omiques, Bioinformatics. Budget total : 6,761 M€.
2016-20 P53 INCA Cancer, Bioinformatics, Metabolism. Budget total : 642 k€.
Partner (12 projects) :
Partner in 5 European projects (FP7, H2020, Horizon 2020, Doctoral Networks), 7 national academic projects, 1 partnership project.
Reviewing
Scientific journals: Nature reports, Bioinformatics, Nucleic Acids Research (NAR), BMC Bioinformatics, BMC Systems Biology, Plos ONE, Metabolomics, Analytical Chemistry
International conferences: Infovis, Eurovis, Graph Drawing
Funding agencies: Major Science Initiatives Fund (Canada), ITN (Europe), BBSRC (UK), ANR (France), IRF (Iceland), Welcome Trust (UK), ERC (Europe)
Selection board for lecturer positions:
INRAE researcher Transform Division
Université Clermont Auvergne
Université Bordeaux 1
PhD Jury (France)
Marianne Borderes (Université Claude Bernard Lyon 1, 2021) examinator
Maël Conan (Unviersité Bretagne Loire, 2021) examinator
Irene Ziska (Universisté de Lyon, 2020) examinator
Stéphanie Monnerie (Université Clermont Auvergne, 2019) examinator
Florent Olivon (Université Paris Saclay, 2018) examinator
Alexis Delabrière (Université Paris Saclay, 2018) examinator
Cinzia Bocca (Unviersité Bretagne Loire, 2018) examinator
Victorien Delannée (Université de Rennes, 2017) examinator
Marko Budinich (Université Bretagne Loire, 2017) examinator
Martin Wannagat (Université Claude Bernard Lyon 1, 2016) examinator
Maria Sorokina (Université d’Evry Val d’Essonne, 2016) examinator
Vu Ngoc Tung Nguyen (University of Bordeaux, 2015)
A. Ghozlane (Université Bordeaux 1, 2012)
P.Y. Koenig (Université Bordeaux 1, 2009)
PhD Jury (International)
Ana-Maria Nàstase (University of Glasgow, UK, 2022) examinator
Fynn Krause (University of Cambridge, UK, 2021) examinator
Yoric Gagnebin (Université de Genève, Swiss, 2019) examinator
James Bradbury (University of Birmingham, UK, 2018) examinator
Maike Aurich (University of Reykjavik, Iceland, 2014) examinator
Xu Gu (University of Glasgow, UK, 2009) examinator
Teaching and training
Metabolic networks & metabolomics
Bioinformatics Msc, UPS, Toulouse
Metabolomics Msc, UPS, Toulouse
PhD Program in University of Sao Paulo, Brazil
PhD Program in Lisboa, Portugal
MSc Students in Glasgow University, UK
Bioinformatics:
Bioinformatics Msc Montpellier University.
Network technologies:
Informatics Msc Montpellier University.
Logic:
BSc students in Montepellier University.
Algorithms:
BSc students in Montepellier University.
C++:
BSc students in Montepellier University.