Publications

2022

M. G. Amankwah, D. Camps, E. W. Bethel, R. Van Beeumen, and T. Perciano, “Quantum pixel representations and compression for N-dimensional images,” Scientific Reports, vol. 12, no. 1, p. 7712, May 2022. (bibtex) (https://doi.org/10.1038/s41598-022-11024-y)

S. Zhang, R. Sadre, B. A. Legg, H. Pyles, T. Perciano, E. W. Bethel, D. Baker, O. Rübel, and J. J. D. Yoreo, “Rotational dynamics and transition mechanisms of surface-adsorbed proteins,” Proceedings of the National Academy of Sciences, vol. 119, no. 16, p. e2020242119, Apr. 2022. (bibtex) (https://doi.org/10.1073/pnas.2020242119)

P.-T. Bremer, G. Tourassi, W. Bethel, K. Gaither, V. Pascucci, and W. Xu, “Visualization for Scientific Discovery, Decision-Making, and Communication,” in Summary Report from the ASCR Workshop on Visualization for Scientific Discovery, Decision-Making, and Communication, United States, Jan. 2022. (bibtex) (https://www.osti.gov/biblio/1845708)

2021

E. W. Bethel, C. Heinemann, and T. Perciano, “Performance Tradeoffs in Shared-memory Platform Portable Implementations of a Stencil Kernel,” in Eurographics Symposium on Parallel Graphics and Visualization, Zürich, Switzerland, Jun. 2021. (bibtex) (https://diglib.eg.org/handle/10.2312/pgv20211043) (https://escholarship.org/uc/item/22q2t9cg)

2020

H. Childs, S. D. Ahern, J. Ahrens, A. C. Bauer, J. Bennett, E. W. Bethel, P.-T. Bremer, E. Brugger, J. Cottam, M. Dorier, S. Dutta, J. M. Favre, T. Fogal, S. Frey, C. Garth, B. Geveci, W. F. Godoy, C. D. Hansen, C. Harrison, B. Hentschel, J. Insley, C. R. Johnson, S. Klasky, A. Knoll, J. Kress, M. Larsen, J. Lofstead, K.-L. Ma, P. Malakar, J. Meredith, K. Moreland, P. Navrátil, P. O’Leary, M. Parashar, V. Pascucci, J. Patchett, T. Peterka, S. Petruzza, N. Podhorszki, D. Pugmire, M. Rasquin, S. Rizzi, D. H. Rogers, S. Sane, F. Sauer, R. Sisneros, H.-W. Shen, W. Usher, R. Vickery, V. Vishwanath, I. Wald, R. Wang, G. H. Weber, B. Whitlock, M. Wolf, H. Yu, and S. B. Ziegeler, “A Terminology for In Situ Visualization and Analysis Systems,” International Journal of High Performance Computing Applications, vol. 34, no. 6, pp. 676–691, Nov. 2020. (bibtex) (https://doi.org/10.1177/1094342020935991) (https://escholarship.org/uc/item/20q1s49z)

E. W. Bethel, D. Camp, T. Perciano, and C. Heinemann, “Performance Analysis of Traditional and Data-Parallel Primitive Implementations of Visualization and Analysis Kernels,” Lawrence Berkeley National Laboratory, Berkeley, CA, USA, 94720, LBNL-2001365, Oct. 2020. (bibtex) (https://escholarship.org/uc/item/3v87w9mt)

T. Perciano, C. Heinemann, D. Camp, B. Lessley, and E. W. Bethel, “Shared-Memory Parallel Probabilistic Graphical Modeling Optimization: Comparison of Threads, OpenMP, and Data-Parallel Primitives,” in ISC Conference on High Performance Computing, pp. 127–145, Jun. 2020. (bibtex) (https://escholarship.org/uc/item/3z48p6kq) (https://doi.org/10.1007/978-3-030-50743-5_7) (https://rdcu.be/cQ3HI (PDF))

B. Loring, M. Wolf, J. Kress, S. Shudler, J. Gu, S. Rizzi, J. Logan, N. Ferrier, and E. W. Bethel, “Improving Performance of M-to-N Processing and Data Redistribution in In Transit Analysis and Visualization,” in Eurographics Symposium on Parallel Graphics and Visualization (EGPGV), Norrköping, Sweden, May 2020 (bibtex) (https://escholarship.org/uc/item/9cn390hq) (https://diglib.eg.org/handle/10.2312/pgv20201073)

T. Peterka, D. Bard, J. C. Bennett, E. W. Bethel, R. A. Oldfield, L. Pouchard, C. Sweeney, and M. Wolf, “Priority research directions for in situ data management: Enabling scientific discovery from diverse data sources,” The International Journal of High Performance Computing Applications, Mar. 2020. (bibtex) (https://doi.org/10.1177/1094342020913628)

2019

J. Gu, B. Loring, K. Wu, and E. W. Bethel, “HDF5 As a Vehicle for in Transit Data Movement,” in Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, New York, NY, USA, pp. 39–43, 2019. (bibtex) (http://doi.acm.org/10.1145/3364228.3364237) (https://escholarship.org/uc/item/8fk6m88h)

T. Peterka, D. Bard, J. Bennett, E. W. Bethel, R. Oldfield, L. Pouchard, C. Sweeney, and M. Wolf, Eds., “Workshop report on In Situ Data Management,” DOE Office of Advanced Scientific Computing Research, Feb. 2019. (bibtex) (https://www.osti.gov/biblio/1493245-workshop-report-situ-data-management)

J. Patchett and E. W. Bethel, “Software Complexity, Heterogeneity, and User-facing Issues,” in In Situ Visualization for Computational Science (Dagstuhl Seminar 18271), vol. 8, no. 7, J. C. Bennett, H. Childs, C. Garth, and B. Hentschel, Eds. Dagstuhl, Germany: Schloss Dagstuhl–Leibniz-Zentrum fuer Informatik, pp. 1–43, 2019. (bibtex) (http://drops.dagstuhl.de/opus/volltexte/2019/10171)

2018 and earlier, coming soon