COURSES

1. COMPUTATIONAL GENOMICS

The advent of NGS technologies has revolutionized the research in molecular biology and genetics. High-throughput analysis have emerged now as promising tools to investigate biological problems in a genome-wide context. To fully take advantage of these approaches, we introduce multiple examples of computational resources that are indispensable to gain novel knowledge from ChIP-seq and RNA-seq processing pipelines.

TABLE OF CONTENTS:

PART I - Introduction

1. The UCSC genome browser

2. The Galaxy environment

PART II - ChIPseq analysis

3. Basic pipeline (I): mapping/peak calling

4. Basic pipeline (II): genes and plots

5. Characterization of peaks

PART III - RNAseq analysis

6. Basic pipeline (I): mapping

7. Basic pipeline (II): quantification

PART IV - Past, present and future

8. Single cell RNAseq

9. Microarrays

[MATERIALS]