Publications

NOTES

(*Equal contributors) (†: Setiamarga Lab Student) 

• Please click on the journal's name to download pdf files directly from publisher sites. 

• Please note that I do not include links for some proceeding papers because they are exclusively distributed to conference participants. However, you can contact me if you need them. 

Peer-reviewed （査読有り）

.《2020》

1. Sato K, Kano Y, Setiamarga DHE, Watanabe HK, Sasaki T. Molecular phylogeny of protobranch bivalves and systematic implications of their shell microstructures. Zoologica Scripta, Accepted.

2. Hirano H, Setiamarga DHE. Biannual monthly changes of sea sludge composition from Hidaka Port, Wakayama, Japan. International Journal of GEOMATE, Accepted.

3. Djalante R, Lassa J, Setiamarga D, Sudjatma A, Indrawan M, Haryanto B, Mahfud C, Sinapoy MS, Djalante S, Rafliana I, Gunawan LA, Surtiari GAK, Warsilah H. Review and analysis of current responses to COVID-19 in Indonesia: Period of January to March 2020. Progress in Disaster Science 6, 1-9 (2020).

4. Huhn M, Madduppa HM, Khair M, Sabrian A, Irawati Y, Anggraini NP, Wilkinson SP, Simpson T, Iwasaki K†, Setiamarga DHE, Dias PJ. Keeping up with introduced marine species at a remote biodiversity hotspot: awareness, training and collaboration across different sectors is key. Biol Invasions 22 (2), 749-771 (2020).

.《2019》

1. Setiamarga DHE*, Uomi M*†, Waturangi D, Suhartono MT, Shovitri M, Kusube M, Yonemitsu H, Hirano H, Ekaputri JJ. Exploration of the potentials of Carbonic Anhydrase-producing bacteria utilization in geopolymer-based bioconcrete development. Proceedings of The 9th International Conference on Geotechnique, Construction Materials and Environment (GEOMATE) 2019, 1231–1236 (2019). 

2. Hirano H, Setiamarga DHE. Compositional changes in sea sludge samples from Hidaka Port in Wakayama, southwest Japan, collected monthly for a period of 16 months. Proceedings of The 9th International Conference on Geotechnique, Construction Materials and Environment (GEOMATE) 2019, 831–836 (2019).

3. Setiamarga DHE, Shiba R†, Kamito Y†, bt. Razali NN†, Yamamoto M†, Arai M, Fujita T, Mah CL. Two partial mitochondrial gene sequences (COI and 12S-rRNA) suggested that Ceramaster japonicus (Sladen, 1889) and Ceramaster patagonicus (Sladen, 1889) (Asteroidea: Goniasteridae) from the Seas of Japan are probably of the same species. Zoosymposia 15, 129-140 (2019).

4. Yamana Y, Hayashibara T, Yamamoto M†, Setiamarga DHE. First observation of the "double-faced cup ossicle" extracted from a deep sea holothurian in Japan. Zoosymposia 15, 203-211 (2019). 

5. Setiamarga DHE, Nakaji N†, Iwamoto S†, Teruya S, Sasaki T. DNA Barcoding study of shelled Gastropods in the intertidal rocky coasts of Central Wakayama Prefecture, Japan, using two gene markers. International Journal of GEOMATE 17 (62), 9–16 (2019). 

6. Hirano H, Kon K, Yoshida M, Harvey B, Setiamarga DHE. The influence of CO2 seeps to coastal environments of Shikine Island in Japan as indicated by geochemistry analyses of sea floor sediments. International Journal of GEOMATE 16 (58), 82–89 (2019).

7. Hirano H, Setiamarga DHE. The reproduction of natural sea sludge (hedoro) using preserved natural inorganic matters. International Journal of GEOMATE 16 (57), 49–55 (2019)

.《2018》

1. Putra SA, Syari IA, Akbar H, Suyatna I, Setiamarga DHE. Human activities and persistent coral reef degradation in Gaspar Strait, Bangka Belitung Islands, Indonesia. F1000 Research 7 (1962), 1–9 (2018) (Version 1). 

2. Nakaji N*†, Iwamoto S*†, Teruya S, Kusube M, Kosaka A, Sasaki T, Setiamarga DHE. The utilization of the nuclear Histone H3 and mitochondrial COI genes for DNA barcoding study of intertidal shelled gastropods from the Nada Coast in Wakayama Prefecture, Japan. Proceedings of The 4th International Conference on Science, Engineering and Environment (GEOMATE) 2018, 28–44 (2018). 

3. Hirano H, Kon K, Yoshida M, Harvey B, Setiamarga DHE. Geochemistry analyses of sea floor sediments from the coasts of Shikine Island in Japan indicate an influence of CO2 seeps to coastal environments. Proceedings of The 8th International Conference on Geotechnique, Construction Materials and Environment (GEOMATE) 2018, 651–658 (2018).

4. Hirano H, Setiamarga DHE. Semi–artificial sludge production method by utilizing inorganic matters from natural sludge. Proceedings of The 4th International Conference on Science, Engineering and Environment (GEOMATE) 2018, 907–913 (2018).

5. Wulandari KD, Ekaputri JJ, Triwulan, Fujiyama C, Setiamarga DHE. Effects of microbial agents to the properties of fly ash-based paste. MATEC Web of Conferences 195, 01012 (2018).

6. Nishikori K, Setiamarga DHE, Tanji T, Kuroda E, Shiraishi H, Ohashi-Kobayashi A. Novel model of nematode-microsporidia interaction: Granulovorax moriokae gen. nov. & sp. nov. and its host Oscheius tipulae. Parasitology 145 (14), 1853–1864 (2018).

7. Hirano H, Semura D, Sakamoto K, Toyama T, Setiamarga DHE. Dynamic changes of organic content over time in the sea sludge collected from the Gobo/Hidaka coastal area in Wakayama, southwest Japan. IOP Conf Series: Earth and Env Sci 176, 012007 (2018).

8. Ekaputri JJ, Anam MS, Luan Y, Fujiyama C, Chijiwa N, Setiamarga DHE. Application of GGBFS and Bentonite to Auto-Healing Cracks of Cement Paste. Journal of Adv Civil Env Eng 1(1), 38–48 (2018).

9. Sanchez G, Setiamarga DHE, Tuanapaya S, Tongtherm K, Winkelmann IE, Schmidbaur H, Umino T, Albertin C, Allcock L, Perales-Raya C, Gleadall I, Strugnell JM, Simakov O, Nabhitabhata J. Genus-level phylogeny of cephalopods using molecular markers: current status and problematic areas. Peer J 6, e4331 (2018). 

.《2017》

1. Ekaputri JJ, Mutiara IS, Nurminarsih S, Nguyen VC, Maekawa K, Setiamarga DHE. The effect of steam curing on chloride penetration in geopolymer concrete. MATEC Web of Conferences 138, 01019 (2017)

2. Setiamarga DHE. Complete mitochondrial genome of the smallmouth hardyhead (Atherinosoma microstoma) and its phylogenetic position among the Atheriniform fishes. Mitochon DNA B: Resources 2(1), 318–320 (2017).

3. Setiamarga DHE. Complete mitochondrial genome and the phylogenetic position of the Lake Eyre hardyhead (Craterocephalus eyresii), a freshwater atherinid fish endemic to Lake Eyre Basin, South Australia. Mitochon DNA B: Resources 2(1) 315–317 (2017).).

4. 寺本沙也加, 照屋清之介, スティアマルガ デフィン. 和歌山県御坊市名田町におけるベッコウイモ(腹足綱, イモガイ科)の生貝の確認記録. 南紀生物 59 (1), 104–106 (2017).

5. Hirano H, Toyama T, Nishimiya N, Setiamarga DHE, Morita S, Uragaki Y, Okamoto K. Artificial sludge based on compositional information of a natural sea sludge. Intl Jour GEOMATE 12, 95–99 (2017).

.《2016》

1. Hirano H, Toyama T, Nishimiya N, Setiamarga DHE, Morita S, Uragaki Y, Okamoto K. Artificial sludge based on compositional information of a natural sea sludge. Proceedings of The 6th International Conference on Geotechnique, Construction Materials and Environment (GEOMATE) 2016, 517–519 (2016).

.《2015》

1. Kusube M, Yamanaka K, Maruyama N, Okamoto T, Nate T, Nakagawa T, Setiamarga D. The “Jizake Project”: Advance science “Monozukuri” education and training through tripartite collaboration, product development, and participation in local area revitalization. Trans ISATE 2015, 355–359 (2015).

.《Before 2015》

1. Shimizu K, Iijima M, Setiamarga DHE, Sarashina I, Kudo T, Asami T, Gittenberger E, Endo K. Left-right asymmetric expression of dpp induces shell coiling in gastropods. BMC EvoDevo 4, 15 (2013).

2. Setiamarga DHE*, Shimizu K*, Kuroda J, Inamura K, Sato K, Isowa Y, Ishikawa M, Hatori R, Ishio A, Kaneko K, Maeda R, Matsumoto K, Nakano T, Sarashina I, Teruya S, Yamakawa T, Zhao R, Satoh N, Sasaki T, Matsuno K, Endo K. An in-silico survey for genes coding for early development signaling molecules in the pearl oyster Pinctada fucata. Zool Sci 30, 877–888 (2013).  (*Equal contributors).

3. Isowa Y, Sarashina I, Setiamarga DHE, Endo K. A comparative study of the shell matrix protein Aspein in pterioid bivalves. J Mol Evol 75, 11-18 (2012).

4. Onai T, Takai A, Setiamarga DHE, Holland LZ. Essential role of Dkk3 for head formation by inhibiting Wnt/β-catenin and Nodal/Vg1 signaling pathways in the basal chordate amphioxus. Evol Dev 14, 338-350 (2012).

5. Koop D, Holland LZ, Setiamarga D, Schubert M, Holland ND. Tail regression induced by retinoic acid signaling in amphioxus larvae occurs by tissue remodeling, not cell death. Evol Dev 13, 427-435 (2011).

6. Yamanoue Y, Setiamarga DHE, Matsuura K. Review: Pelvic fins in teleost fishes: structure, function, and evolution. Jour Fish Biol 77, 1173-1208 (2010).

7. Setiamarga DHE, Miya M, Yamanoue Y, Azuma Y, Inoue JG, Ishiguro NB, Mabuchi K, Nishida M. Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates. Biol Lett 5, 812-816 (2009) (Recommended by the Faculty of 1000). 

8. Setiamarga DHE, Miya M, Yamanoue Y, Mabuchi K, Satoh TP, Inoue JG, Nishida M. Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives): The first evidence based on whole mitogenome sequences. Mol Phylo Evol 49, 598-605 (2008).

9. Miyake A, Higashijima S, Kobayashi D, Narita T, Jindo T, Setiamarga DHE, Ohisa S, Orihara N, Hibiya K, Konno S, Sakaguchi S, Horie K, Imai Y, Naruse K, Kudo A, Takeda H. A mutation in the abcb7 gene causes abnormal iron and fatty acid metabolism in developing medaka fish. Dev Growth Differ 50, 703-716 (2008).

10. Takashima S, Shimada A, Kobayashi D, Yokoi H, Narita T, Jindo T, Kage T, Kitagawa T, Kimura T, Sekimizu K, Miyake A, Setiamarga DH, Murakami R, Tsuda S, Ooki S, Kakihara K, Hojo M, Naruse K, Mitani H, Shima A, Ishikawa Y, Araki K, Saga Y. and Takeda H. Phenotypic analysis of a novel chordin mutant in medaka. Dev Dyn 236, 2298- 2310 (2007).

11. Hojo M, Takashima S, Kobayashi D, Sumeragi A, Shimada A, Tsukahara T, Yokoi H, Narita T, Jindo T, Kage T, Kitagawa T, Kimura T, Sekimizu K, Miyake A, Setiamarga D, Murakami R, Tsuda S, Ooki S, Kakihara K, Naruse K and Takeda H. Right-elevated expression of charon is regulated by fluid flow in medaka Kupffer's vesicle. Dev Growth Differ 49, 395-405 (2007).

12. Tanaka K, Ohisa S, Orihara N, Sakaguchi S, Horie K, Hibiya K, Konno S, Miyake A, Setiamarga D, Takeda H, Imai Y and Kudo A. Characterization of mutations affecting embryonic hematopoiesis in the medaka, Oryzias latipes. Mech Dev 121, 739-746 (2004).

Non-peer-reviewed （査読無し）

.《2020》

1. 中島理子†, 中路 渚†, Tu DV, 佐々木猛智, Setiamarga DHE. ミトコンドリア由来12S-rRNA遺伝子を用いた有殻腹足類の博物館標本のDNAバーコーディング. 日本海洋工学会・日本船舶, 海洋工学会第28回海洋工学シンポジウム論文集. OES28-0027, 6 pp., (2020).

2. 西本真琴, 大原珠海†, 山本真生†, 佐々木猛智, Setiamarga DHE. 海棲動物液浸標本の博物館保存科学：アサリの液浸標本の生化学的組成変化を例に. 日本海洋工学会・日本船舶, 海洋工学会第28回海洋工学シンポジウム論文集. OES28-0045, 4 pp., (2020).

Newspaper and Mass-media

1. Setiamarga DHE. Media Indonesia, 4 April 2020. Jangan Senang Dulu walau Negatif!（訳：検査結果が陰性でも喜ぶな！；Don't celebrate even if you're neg!）（新型コロナウイルスの個体検査についてのインドネシア語新聞記事：専門家の意見、半面）

2. Setiamarga DHE. Media Indonesia, 16 March 2020. Perlu Uji Genetik untuk Mendeteksi Infeksi Covid-19!（訳：COVID-19の感染を検知するには分子遺伝学的検査が必要！；Genetic tests is necessary to detect Covid-19 infections!）（新型コロナウイルスのPCR検査についてのインドネシア語新聞記事：専門家の意見、全面）