logreg2ph is an R package to implement the methods described in Lotspeich et al. (2021+) for efficient odds ratio estimation under two-phase sampling using error-prone data.
MultiTDS is a command-line software program written in C++ to implement the methods described in Tao et al. (2015) for the analysis of sequence data under multivariate trait-dependent sampling. The program is written for 64-bit x86 based Linux.
SUGEN is a command-line software program written in C++ to implement the weighted and unweighted approaches described in Lin et al. (2014) for various types of association analysis under complex survey sampling. The program is written for 64-bit x86 based Linux.
TwoPhaseReg is an R package to implement the sieve maximum likelihood estimator described in Tao, Zeng, and Lin (2017), Tao, Zeng, and Lin (2020), and Tao et al. (2021) for regression analysis under general two-phase, outcome-dependent sampling. A tutorial on how to install R packages hosted on GitHub can be found here.