usage:
python danpos.py <command> < chr_file > <file_path>[optional arguments]
positional arguments:
command set as 'wiq'
chr_file a text file with each line describing a chromosome length, e.g. 'chr1 10043'. Chromosome size file could be downloaded from USCS.
input_paths paths to the input files, each file should be in '.wig' or '.wiq' format. Each path could point to a file or a directory that contains the files. use ':' to separate paths, e.g. 'Path_A:path_B
optional arguments:
-h, --help show this help message and exit
--out_dir a path to the output directory (default: wiq_result)
--reference a path to the file containing reference data. When reference data is available, data in each input file will be normalized to have the same quantiles as in reference data (default: None)
--iformat the data format in input files, can be 'wig' or 'wiq' (default: wig)
--rformat the data format in the reference file, can be 'wig' or 'wiq' (default: wig)
--isorted set to 1 if the input file is in .wiq format and sorted. (default: 0)
--rsorted set to 1 if the reference file is in .wiq format and sorted.(default: 0)
--step the step or span size in .wig format data. (default: 10)
--buffer_size maximal memory size that can be used to sort file, e.g. set to 1 when need 1G memory. (default: 10)