JMU syllabus: Studies in Conspiracy Theories (nice syllabus layout)
NYU syllabus: Conspiracy Theories: Paranoid Fictions after Freud (difficult texts; nice breakout of weeks)
Innus College syllabus:Critical Thinking and Enquiry in Written Communication 2010-11 (has many resource links)
From JFK to 9/11: ECTS Syllabus (brief, but focuses on films)
Stanford University syllabus: Conspiracy Theory (good overview of paper requirements)
Rutgers Syllabus: Conspiracy Theory and Popular Culture
GMU: Lying about the Past
Drew University: Conspiracy Theory in American History
Amherst College: Secrets and Lies
URI: Political Science Seminar, The JFK Assassination
Swathmore: Film Studies and Conspiracy Theories
Harvard: Conspiracy: (good list of books as resources)