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NEB Toos (New England BioLabs Tools)
Primer X (Mutagenesis Primers)
PHYRE (Protein Fold Recognition Server)
ExPASy (Bioinformatics Resource Portal)
ModLoop (Modeling of Loops in Protein Structures)
Calculations (Three-/One-letter Amino Acids)
tcoffee (Multiple Sequence Alignment Tool)
CLUSTALW (Multiple Sequence Alignment)
BioEdit (Biological Sequence Alignment Editor)
NMR
Tutorial-1 (Protein NMR)
CARA (Computer Aided Resonance Assignment)
CCPN (Collaborative Computing Project for NMR)
Sparky (NMR Assignment and Integration Software)
NMRViewJ (Visualization and Analysis of NMR data)
BMRB (Biological Magnetic Resonance Data Bank)
XPLOR (Structure Determination Program)
CYANA (Structure Determination Program)
Generate Parameters for a Small Molecule
1. ACPYPE
3. HIC-UP
4. Babel
PDB
DeepView - Swiss - PDBViewer
PyMOL (Molecular Visualization System)
MolScript (Displaying Molecular 3-D Structures)
MolMol (Molecular Graphics Program)
RasMol (Molecular Graphics Program)
VMD (Molecular Visualization Program)
Pymol Tricks
1. http://www-cryst.bioc.cam.ac.uk/members/zbyszek/figures_pymolhttp://www-cryst.bioc.cam.ac.uk/members/zbyszek/figures_pymol
Chemistry Drawing Software
WebCSD (Online portal: Cambridge Structural Database)
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" Education is a progressive discovery of our ignorance"
- Will Durant
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