Publications

This list of publications has been updated in May 2020. Updated publications are available on my Google scholar page

Articles:

1. Siyuan Yan, Xianzhen Yang, Xiao , Bruno Jedynak and Fu Li, Statistical model

of FBMC-OQAM signals for predicting spectral regrowth, International Journal of

Electronics Letters, 0:0 (2020):1-12.

2. He, Yufan, Aaron Carass, Yihao Liu, Bruno M. Jedynak, Sharon D. Solomon, Shiv

Saidha, Peter A. Calabresi, and Jerry L. Prince. "Deep learning based topology guaranteed

surface and MME segmentation of multiple sclerosis subjects from retinal OCT."

Biomedical Optics Express 10, no. 10 (2019): 5042-5058.

3. Bilgel, Murat, Bruno M. Jedynak, and Alzheimer's Disease Neuroimaging Initiative.

"Predicting time to dementia using a quantitative template of disease progression."

Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring 11 (2019): 205-

215.

4. Purnima Rajan, Yongming Ma, Bruno Jedynak, "Cox Processes for Counting by Detection",

Journal of Mathematical Imaging and Vision, In Press, 2018.

5. Andrew Lang, Aaron Carass, Bruno M. Jedynak, Sharon D. Solomon, Peter A. Calabresi,

and Jerry L. Prince. "Intensity inhomogeneity correction of SD-OCT data using

macular atspace." Medical image analysis 43 (2018): 85-97.

6. Corinne D. Engelman, Burcu F. Darst, Murat Bilgel, Eva Vasiljevic, Rebecca L. Koscik,

Bruno M. Jedynak, and Sterling C. Johnson. "The eect of rare variants in TREM2

and PLD3 on longitudinal cognitive function in the Wisconsin Registry for Alzheimer's

Prevention." Neurobiology of Aging (2017):177-e1

7. Han Weidong, Purnima Rajan, Peter I. Frazier, and Bruno M. Jedynak. "Bayesian

Group Testing Under Sum Observations: A Parallelizable Two-Approximation for Entropy

Loss." IEEE Transactions on Information Theory 63, no. 2 (2017): 915-933.

8. Murat Bilgel, Rebecca L. Koscik, Yang An, Jerry L. Prince, Susan M. Resnick, Sterling

C. Johnson, and Bruno M. Jedynak. "Temporal order of Alzheimer's diseaserelated

cognitive marker changes in BLSA and WRAP longitudinal studies." Journal

of Alzheimer's Disease 59, no. 4 (2017): 1335-1347.

9. Kalyani Kansal, Zhen Yang, Ann M. Fishman, Haris I. Sair, Sarah H. Ying, Bruno M.

Jedynak, Jerry L. Prince, and Chiadi U. Onyike. "Structural cerebellar correlates of

cognitive and motor dysfunctions in cerebellar degeneration." Brain 140, no. 3 (2016):

707-720.

10. Annie M. Racine, Lindsay R. Clark, Sara E. Berman, Rebecca L. Koscik, Kimberly

D. Mueller, Derek Norton, Christopher R. Nicholas, C.R., Blennow, K., Zetterberg,

H., B. Jedynak and M. Bilgel, "Associations between performance on an abbreviated

CogState battery, other measures of cognitive function, and biomarkers in people at

risk for Alzheimer's disease." Journal of Alzheimer's Disease 54, no. 4 (2016): 1395-

1408.

11. Murat Bilgel, Jerry L Prince, Dean F Wong, Susan M Resnick, and Bruno M Jedynak,

A multivariate nonlinear mixed eects model for longitudinal image analysis:

Application to amyloid imaging, NeuroImage 134 (2016): 658-670.

12. Zhen Yang, Chuyang Ye, John A. Bogovic, Aaron Carass, Bruno M. Jedynak, Sarah H.

Ying, and Jerry L. Prince, Automated cerebellar lobule segmentation with application

to cerebellar structural analysis in cerebellar disease, NeuroImage 127 (2016): 435-444.

13. Jongho Kim, Andrew G. Horti, William B. Mathews, Vladimir Pogorelov, Heather

Valentine, James R. Brasic, Daniel P. Holt, Hayden T. Ravert, Robert F. Dannals,

Luwei Zhou, Bruno M. Jedynak, Atsushi Kamiya, Mikhail V. Pletnikov, and Dean F.

Wong, Quantitative multimodal brain autoradiography of glutamatergic, dopaminergic,

cannabinoid, and nicotinic receptors in mutant Disrupted-In-Schizophrenia-1

(DISC1) mic, Molecular Imaging & Biology, 17.3 (2015): 355-363.

14. Bruno M. Jedynak, Bo Liu, Andrew Lang, Yulia Gel and Jerry L. Prince, A computational

method for computing an Alzheimer's Disease Progression Score; experiments

and validation with the ADNI dataset, Neurobiology of Aging, 36 (2015): S178-S184.

15. Allison M. Murawski, Saumya Gurbani, Mariah Klunk, Laurent Younes, Sanjay K.

Jain, and Bruno M. Jedynak, Imaging the Evolution of Reactivation Pulmonary Tuberculosis

in Mice Using 18F-2-Fluoro-Deoxy-D-Glucose Positron Emission Tomography

, Journal of Nuclear Medicine, 55.10 (2014): 1726-1729.

16. M. Bilgel, Y. An, A. Lang, J. Prince, L. Ferrucci, B. Jedynak, and S. M. Resnick,

Trajectories of Alzheimer disease-related cognitive measures in a longitudinal sample,

Alzheimer's & Dementia, 10.6 (2014): 735-742.

17. Alexander Crits-Christoph, Courtney K. Robinson, Tyler Barnum, W. Florian Fricke,

Alfonso F. Davila, Bruno Jedynak, Christopher P. McKay, and Jocelyne DiRuggiero,

Colonization patterns of soil microbial communities in the Atacama Desert, Microbiome

1.1 (2013)1:28.

18. Raphael Sznitman, Rogerio Richa, Russel Taylor, Bruno Jedynak, and Gregory D.

Hager Unied detection and tracking of instruments during retinal microsurgery,

IEEE PAMI 35.5 (2013):1263-1273.

19. John A. Bogovic, Bruno Jedynak, Rachel Rigg, Annie Du, Bennett A Landman, Jerry

L Prince, and Sarah H Ying, Approaching Expert Results Using a Hierarchical Cerebellum

Parcellation Protocol For Multiple Inexpert Human Raters, NeuroImage 64,

Jan (2013):616-629.

20. Bruno Jedynak, Andrew Lang, Bo Liu, Elyse Katz, Yanwei Zhang, Bradley T. Wyman,

David Raunig, Pierre C. Jedynak, Brian Cao, and Jerry Prince for the Alzheimer's

Disease Neuroimaging Initiative, A Computational Neurodegenerative Disease Progression

Score: Method and Results with the Alzheimer's Disease Neuroimaging Initiative

Cohort, NeuroImage (2012) Nov 15;63(3):1478-86.

21. Mrudula Pullambhatla, Jean Tessier, Graham Beck, Bruno Jedynak, Jens UWurthner,

and Martin G Pomper: [125I]FIAU imaging in a preclinical model of lung infection:

quantication of bacterial load. Am J Nucl Med Mol Imaging 2012;2(3):260-270.

22. Bruno Jedynak, Peter L. Frazier, and Raphael Sznitman, Twenty Questions with

Noise: Bayes Optimal Policies for Entropy Loss, Journal of Applied Probability, 49(1),

March (2012):114-136.

23. N. Penumetcha, S. Kabadi, B. Jedynak, C. Walcutt, M.H. Gado, L. Wang, and

J.T. Ratnanather, Feasibility of Geometric-Intensity-Based Semi-Automated Delineation

of the Tentorium Cerebelli from MRI Scans. Journal of Neuroimaging, 21(2),

(2011):e148-e155.

24. Raphael Sznitman and Bruno Jedynak, Active Testing for Face Detection and Localization

,IEEE Pattern analysis and Machine Intelligence 32(10), (2010):1914-1920.

25. Camille Vidal and Bruno Jedynak, Learning to Match: Deriving optimal template-

Matching algorithms from Probabilist Image Models, International Journal of Computer

Vision 88(2), (2010):189-213.

26. Stephanie L. Davis, Eric L. Nuermberger, Peter Um, Camille Vidal, Bruno Jedynak,

Martin G. Pomper, William R. Bishail, and Sanjay K. Jain. Non-invasive pulmonary

[18F]-2-uoro-deoxy-D-glucose positron emission tomography correlates with bactericidal

activity of tuberculosis drug treatment, Antimicrobial Agents and Chemotherapy,

53(11), (2009):4879-4884.

27. Joshua Vogelstein, Brendon Watson, Adam Packer, Bruno Jedynak, Rafael Yuste, and

Liam Paninski, Spike inference from calcium imaging using sequential Monte Carlo

methods, Biophysical journal, 97(2), (2009):636-655.

28. H. Cho, H. Jönsson, K. Campbell, P. Melke, JW Williams, B. Jedynak, A.M. Stevens,

A. Groisman, and A. Levchenko. Self-Organization in High-Density Bacterial Colonies:

Ecient Crowd Control. PLoS Biol 5(11), (2007):e302. This article was featured in

ScienceDaily.

29. N. Penumetcha, B. Jedynak, M. Hosakere, E. Ceyhan, K.N. Botteron, and J.T. Ratnanather,

Segmentation of arteries in MPRAGE images of the ventral medial prefrontal

cortex, Comput Med Imaging Graph 32(1) (2008):36-43

30. H. Huang, B. Jedynak, and J. Bader, Where have all the interactions gone ? Estimating

the coverage of two-hybrid protein interaction maps, PLoS Computational

Biology, PLoS Comput Biol., 3(11), September (2007):e214. This article was selected

for Faculty of 1000 Biology.

31. B. Jedynak, and D. Karakos Finding a Needle in a Haystack: Conditions for Reliable

Detection in the Presence of Clutte, Statistics and Probability Letters, 78(5), August

2007:471-480,

32. B. Jedynak, H. Zheng and M. Daoudi, Skin Detection using Pairwise Models,Image

and Vision Computing, 23(13), pp. 1122-1130, November 2005.

33. B. Jedynak, and S. Khudanpur, Maximum Likelihood Set for Estimating a Point Mass

Function, Neural computation, 17(7), pp. 1508-1530, July 2005.

34. H. Zheng, M. Daoudi, and B. Jedynak, Blocking Adult Images Based on Statistical

Skin Detection, Electronic Letters on Computer Vision and Image Analysis, 4(2), pp.

1-14, 2004.

35. D. Geman and B. Jedynak, Model-based classication trees, IEEE Transactions on

Information Theory, 47(3), pp. 1075-1082, 2001.

36. D. Geman and B. Jedynak, An active testing model for tracking roads from satellite

images, IEEE Transactions on Pattern Analysis and Machine Intelligence , 18(1), pp.

1-14, 1996.

Refereed publications in conference proceedings:

1. Yufan He, Aaron Carass, Yihao Liu, Angeliki Filippatou, Bruno M Jedynak, Sharon

D Solomon, Shiv Saidha, Peter A Calabresi, Jerry L Prince. Segmenting retinal OCT

images with inter-B-scan and longitudinal information, Medical Imaging 2020, Image

Processing, 2020.

2. P Kearns, J Lipor, B Jedynak. Optimal Adaptive Sampling for Boundary Estimation

with Mobile Sensors, 53rd Asilomar Conference on Signals, Systems, and Computers,

1621-1625, 2019.

3. Yufan He, Aaron Carass, Yihao Liu, Bruno M Jedynak, Sharon D Solomon, Shiv

Saidha, Peter A Calabresi, Jerry L Prince. Fully convolutional boundary regression

for retina OCT segmentation, International Conference on Medical Image Computing

and Computer-Assisted Intervention 2019.

4. Anthony D Rhodes, Jordan Witte, Melanie Mitchell, Bruno Jedynak. Gaussian processes

with context-supported priors for active object localization. 2018 International

Joint Conference on Neural Networks (IJCNN).

5. He Yufan, Aaron Carass, Yeyi Yun, Can Zhao, Bruno M. Jedynak, Sharon D. Solomon,

Shiv Saidha, Peter A. Calabresi, and Jerry L. Prince. Towards Topological Correct

Segmentation of Macular OCT from Cascaded FCNs." In Fetal, Infant and Ophthalmic

Medical Image Analysis, pp. 202-209. Springer, Cham, 2017.

6. Zhen Yang, S Mazdak Abulnaga, Aaron Carass, Kalyani Kansal, Bruno M. Jedynak,

Chiadi Onyike, Sarah H. Ying, and Jerry L Prince, Landmark based shape analysis

for cerebellar ataxia classication and cerebellar atrophy pattern visualization, SPIE

Medical Imaging, 2016.

7. S.M. Abulnaga, Zhen Yang, Aaron Carass, Kalyani Kansal, Bruno M. Jedynak, Chiadi

U. Onyike, Sarah H Ying, and Jerry L Prince, A toolbox to visually explore cerebellar

shape changes in cerebellar disease and dysfunction, SPIE Medical Imaging 2016.

8. Bhavna J. Antony, Min Chen, Aaron Carass, Bruno M. Jedynak, Omar Al-Louzi,

Sharon Solomon, Shiv Saidha, Peter A. Calabresi, and Jerry L Prince, Voxel based

morphometry in optical coherence tomography: validation and core ndings, SPIE

Medical Imaging, 2016.

9. P. Rajan, P. Burlina, M. Chen, D. Edell, B. Jedynak, N. Mehta, A. Sinha, and G.

Hager, Autonomous on-board Near Earth Object detection, 2015 IEEE Applied Imagery

Pattern Recognition Workshop (AIPR).

10. Purnima Rajan, Weidong Han, Raphael Sznitman, Peter I. Frazier, and Bruno Jedynak,

Bayesian Multiple Target Localization, ICML 2015 (acceptation rate approx.

25%) : 1945-1953

11. Murat Bilgel, Bruno Jedynak, Dean F. Wong, Susan M. Resnick, and Jerry L. Prince,

Temporal Trajectory and Progression Score Estimation from Voxelwise Longitudinal

Imaging Measures: Application to Amyloid Imaging. IPMI 2015: 424-436

12. Ehsan Variani, Kamel Lahouel, Avner Bar-Hen, and Bruno Jedynak NON-adaptive

policies for 20 questions target localization, International Symposium on Information

Theory (ISIT) 2015: 775-778

13. R. Sznitman, A. Lucchi, P. I. Frazier, B. Jedynak, and P. Fua An Optimal Policy for

Target Localization with Application to Electron Microscopy, International conference

on Machine Learning, 2013 (acceptation rate approx. 25%).

14. Peter Frazier, Bruno M. Jedynak, and Li Chen, Sequential Screening: A Bayesian Dynamic

Programming Analysis Of Optimal Group-Splitting, proceedings of the Winter

Simulation Conference 2012.

15. Bruno Jedynak, Bo Liu, Andrew Lang, Yulia Gel, and Jerry Prince, A Time-Change

Method for Computing an Alzheimer's Disease Progression Score, proceedings of NIBAD'

2012 (workshop associated with MICCAI 2012)

16. R. Sznitman, A. Basu, R. Richa, James Handa, P. Gehlbach, B. Jedynak, R. H. Taylor,

and G. D. Hager, 'Unied Detection and Tracking in Retinal Microsurgery, proceedings

of MICCAI 2011 (acceptance rate of approx. 30%).

17. C. Vidal, D. Beggs, L. Younes, S. K. Jain, and B. Jedynak, Incorporating User Input

in Template-Based Segmentation , proceedings of ISBI 2011.

18. C. Vidal, J. Hewitt, S. Davis, L. Younes, S. Jain, and B. Jedynak, Template Registration

with Missing Parts: Application to the Segmentation of Tuberculosis Infected

Lungs, Proceedings of the International Symposium on Biomedical Images, SPIE'09,

April 13-17 2009.

19. C. Izard and B. Jedynak 'Statistical Deformable Model Applied to Anatomical Landmark

Detection, Proceedings of the International Symposium on Biomedical Images,

SPIE'08, February 16-21, 2008

20. B. Jedynak and D. Karakos, Unigram Language Models using Diusion Smoothing

over Graphs, in Proceedings of the 2007 Workshop on Graph-based Methods for Natural

Language Processing (TextGraphs-2), Rochester, NY, April 26, 2007.

21. C. Izard, B. Jedynak, and C. Stark, Spline-Based Probabilistic Model for Anatomical

Landmark Detection , proceedings of MICCAI'06 (acceptance rate of approx. 30%),

9(Pt 1), pp: 849-56. October 1-6, 2006.

22. C. Izard and B. Jedynak, Bayesian Registration for anatomical Landmark Registration

, proceedings of the IEEE symposium on Biomedical Imaging: From Nano to

Macro, ISBI'06, April 6-9 2006.

23. B. Jedynak, S. Khudanpur, and A. Yazgan, Estimating Probabilities from Small Samples

, proceedings of the 2005 Joint Statistical Meetings (JSM), Minneapolis, Minnesota,

August 7-11, 2005.

24. B. Jedynak, C. Izard, and C. Stark, Automatic Landmarking of Magnetic Resonance

Brain Images, proceedings of the SPIE International Symposium on Medical Imaging,

12-17 February 2005, San Diego, California, USA.

25. H. Zheng, M. Daoudi, and B. Jedynak, From Maximum Entropy to Belief Propagation:

An application to Skin Detection, Proceedings of the British Machine Vision

Conference (BMVC'04) (Acceptance rate of approx. 36%) , September 7-9, 2004.

26. B. Jedynak, H. Zheng, and M. Daoudi, Statistical Models for Skin Detection, Computer

Vision and Pattern Recognition Workshop, Madison, Wisconsin, Vol. 8, pp.

92-92, 2003.

27. B. Jedynak, H. Zheng ,and M. Daoudi, Maximum Entropy Models for Skin Detection,

Proc. Third Indian Conference On Computer Vision, Graphics and Image Processing,

ICVGIP 2002, pp. 276-281, Ahmedabad, India, December 16-18 2002,

28. M. Obeid, B. Jedynak and M. Daoudi, Image Indexing and Retrieval Using Intermediate

Features, Proc. of the ninth ACM (Association for Computing Machinery)

International Conference on Multimedia 2001, pp. 531533, Ottawa, Canada, September

30 - October 5 2001.

29. B. Jedynak, Une comparaison entre stratégies locales et globales pour la construction

d'arbres de classication, Proc. Société Française de Statistique, SFDS'2000, Fez,

Marocco, Mai 15-19 2000.

30. Y. Amit, D. Geman, and B. Jedynak, Ecient focusing and face detection, Face

Recognition: From Theory to Applications, eds. H. Wechsler et al, NATO ASI Series

F, Springer-Verlag, Berlin, pp. 157-173, 1998.

31. F. Jung, B. Jedynak, and D. Geman, Recognizing buildings in aerial images, Automatic

Extraction of Man-Made Objects from Aerial and Space Images , II, Birkhauseer

(Basel), pp. 173-182, Ascona, Switzerland, May 1997.

32. B. Jedynak and F. Fleuret, Reconnaissance d'objets 3D à l'aide d'arbres de classication

, Proc. Image'Com 96, pp. 25-30 Bordeaux, France, Mai 1996.

33. B. Jedynak and J.P. Rozé, Tracking roads in SPOT images by playing twenty questions

, Automatic Extraction of Man-Made Objects from Aerial and Space Images,

Birkhauseer (Basel) pp. 243-253, Monte-Verità, April 1995.

34. D. Geman and B. Jedynak, Shape recognition and twenty questions, Proc. Reconnaissance

des Formes et Intelligence Articielle, RFIA '94, Paris, France, 1, pp. 21-37,

1994.

35. B. Jedynak, A. Gagalowicz, and M. Haindl, Hierarchical Highway Recognition from

Satellite Images, Proc. Scandinavian Conference on Image Analysis SCIA'93, Tromso,

Norway, May 25-28, 1993.

36. D. Geman and B. Jedynak, Detection of roads in SPOT satellite images, Proc. International

Geoscience and Remote Sensing Symposium, IGARSS '91, Helsinski, Finland,

June 1991.

Non referreed publications:

1. B. Jedynak, Chercher une aiguille dans une botte de foin, Publication IRMA , 56-XII,

December 2001.

2. B. Jedynak, Stratégies visuelles et jeu des 20 questions, CNRS-INFO, July 2000.