Publications
This list of publications has been updated in May 2020. Updated publications are available on my Google scholar page
Articles:
1. Siyuan Yan, Xianzhen Yang, Xiao , Bruno Jedynak and Fu Li, Statistical model
of FBMC-OQAM signals for predicting spectral regrowth, International Journal of
Electronics Letters, 0:0 (2020):1-12.
2. He, Yufan, Aaron Carass, Yihao Liu, Bruno M. Jedynak, Sharon D. Solomon, Shiv
Saidha, Peter A. Calabresi, and Jerry L. Prince. "Deep learning based topology guaranteed
surface and MME segmentation of multiple sclerosis subjects from retinal OCT."
Biomedical Optics Express 10, no. 10 (2019): 5042-5058.
3. Bilgel, Murat, Bruno M. Jedynak, and Alzheimer's Disease Neuroimaging Initiative.
"Predicting time to dementia using a quantitative template of disease progression."
Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring 11 (2019): 205-
215.
4. Purnima Rajan, Yongming Ma, Bruno Jedynak, "Cox Processes for Counting by Detection",
Journal of Mathematical Imaging and Vision, In Press, 2018.
5. Andrew Lang, Aaron Carass, Bruno M. Jedynak, Sharon D. Solomon, Peter A. Calabresi,
and Jerry L. Prince. "Intensity inhomogeneity correction of SD-OCT data using
macular atspace." Medical image analysis 43 (2018): 85-97.
6. Corinne D. Engelman, Burcu F. Darst, Murat Bilgel, Eva Vasiljevic, Rebecca L. Koscik,
Bruno M. Jedynak, and Sterling C. Johnson. "The eect of rare variants in TREM2
and PLD3 on longitudinal cognitive function in the Wisconsin Registry for Alzheimer's
Prevention." Neurobiology of Aging (2017):177-e1
7. Han Weidong, Purnima Rajan, Peter I. Frazier, and Bruno M. Jedynak. "Bayesian
Group Testing Under Sum Observations: A Parallelizable Two-Approximation for Entropy
Loss." IEEE Transactions on Information Theory 63, no. 2 (2017): 915-933.
8. Murat Bilgel, Rebecca L. Koscik, Yang An, Jerry L. Prince, Susan M. Resnick, Sterling
C. Johnson, and Bruno M. Jedynak. "Temporal order of Alzheimer's diseaserelated
cognitive marker changes in BLSA and WRAP longitudinal studies." Journal
of Alzheimer's Disease 59, no. 4 (2017): 1335-1347.
9. Kalyani Kansal, Zhen Yang, Ann M. Fishman, Haris I. Sair, Sarah H. Ying, Bruno M.
Jedynak, Jerry L. Prince, and Chiadi U. Onyike. "Structural cerebellar correlates of
cognitive and motor dysfunctions in cerebellar degeneration." Brain 140, no. 3 (2016):
707-720.
10. Annie M. Racine, Lindsay R. Clark, Sara E. Berman, Rebecca L. Koscik, Kimberly
D. Mueller, Derek Norton, Christopher R. Nicholas, C.R., Blennow, K., Zetterberg,
H., B. Jedynak and M. Bilgel, "Associations between performance on an abbreviated
CogState battery, other measures of cognitive function, and biomarkers in people at
risk for Alzheimer's disease." Journal of Alzheimer's Disease 54, no. 4 (2016): 1395-
1408.
11. Murat Bilgel, Jerry L Prince, Dean F Wong, Susan M Resnick, and Bruno M Jedynak,
A multivariate nonlinear mixed eects model for longitudinal image analysis:
Application to amyloid imaging, NeuroImage 134 (2016): 658-670.
12. Zhen Yang, Chuyang Ye, John A. Bogovic, Aaron Carass, Bruno M. Jedynak, Sarah H.
Ying, and Jerry L. Prince, Automated cerebellar lobule segmentation with application
to cerebellar structural analysis in cerebellar disease, NeuroImage 127 (2016): 435-444.
13. Jongho Kim, Andrew G. Horti, William B. Mathews, Vladimir Pogorelov, Heather
Valentine, James R. Brasic, Daniel P. Holt, Hayden T. Ravert, Robert F. Dannals,
Luwei Zhou, Bruno M. Jedynak, Atsushi Kamiya, Mikhail V. Pletnikov, and Dean F.
Wong, Quantitative multimodal brain autoradiography of glutamatergic, dopaminergic,
cannabinoid, and nicotinic receptors in mutant Disrupted-In-Schizophrenia-1
(DISC1) mic, Molecular Imaging & Biology, 17.3 (2015): 355-363.
14. Bruno M. Jedynak, Bo Liu, Andrew Lang, Yulia Gel and Jerry L. Prince, A computational
method for computing an Alzheimer's Disease Progression Score; experiments
and validation with the ADNI dataset, Neurobiology of Aging, 36 (2015): S178-S184.
15. Allison M. Murawski, Saumya Gurbani, Mariah Klunk, Laurent Younes, Sanjay K.
Jain, and Bruno M. Jedynak, Imaging the Evolution of Reactivation Pulmonary Tuberculosis
in Mice Using 18F-2-Fluoro-Deoxy-D-Glucose Positron Emission Tomography
, Journal of Nuclear Medicine, 55.10 (2014): 1726-1729.
16. M. Bilgel, Y. An, A. Lang, J. Prince, L. Ferrucci, B. Jedynak, and S. M. Resnick,
Trajectories of Alzheimer disease-related cognitive measures in a longitudinal sample,
Alzheimer's & Dementia, 10.6 (2014): 735-742.
17. Alexander Crits-Christoph, Courtney K. Robinson, Tyler Barnum, W. Florian Fricke,
Alfonso F. Davila, Bruno Jedynak, Christopher P. McKay, and Jocelyne DiRuggiero,
Colonization patterns of soil microbial communities in the Atacama Desert, Microbiome
1.1 (2013)1:28.
18. Raphael Sznitman, Rogerio Richa, Russel Taylor, Bruno Jedynak, and Gregory D.
Hager Unied detection and tracking of instruments during retinal microsurgery,
IEEE PAMI 35.5 (2013):1263-1273.
19. John A. Bogovic, Bruno Jedynak, Rachel Rigg, Annie Du, Bennett A Landman, Jerry
L Prince, and Sarah H Ying, Approaching Expert Results Using a Hierarchical Cerebellum
Parcellation Protocol For Multiple Inexpert Human Raters, NeuroImage 64,
Jan (2013):616-629.
20. Bruno Jedynak, Andrew Lang, Bo Liu, Elyse Katz, Yanwei Zhang, Bradley T. Wyman,
David Raunig, Pierre C. Jedynak, Brian Cao, and Jerry Prince for the Alzheimer's
Disease Neuroimaging Initiative, A Computational Neurodegenerative Disease Progression
Score: Method and Results with the Alzheimer's Disease Neuroimaging Initiative
Cohort, NeuroImage (2012) Nov 15;63(3):1478-86.
21. Mrudula Pullambhatla, Jean Tessier, Graham Beck, Bruno Jedynak, Jens UWurthner,
and Martin G Pomper: [125I]FIAU imaging in a preclinical model of lung infection:
quantication of bacterial load. Am J Nucl Med Mol Imaging 2012;2(3):260-270.
22. Bruno Jedynak, Peter L. Frazier, and Raphael Sznitman, Twenty Questions with
Noise: Bayes Optimal Policies for Entropy Loss, Journal of Applied Probability, 49(1),
March (2012):114-136.
23. N. Penumetcha, S. Kabadi, B. Jedynak, C. Walcutt, M.H. Gado, L. Wang, and
J.T. Ratnanather, Feasibility of Geometric-Intensity-Based Semi-Automated Delineation
of the Tentorium Cerebelli from MRI Scans. Journal of Neuroimaging, 21(2),
(2011):e148-e155.
24. Raphael Sznitman and Bruno Jedynak, Active Testing for Face Detection and Localization
,IEEE Pattern analysis and Machine Intelligence 32(10), (2010):1914-1920.
25. Camille Vidal and Bruno Jedynak, Learning to Match: Deriving optimal template-
Matching algorithms from Probabilist Image Models, International Journal of Computer
Vision 88(2), (2010):189-213.
26. Stephanie L. Davis, Eric L. Nuermberger, Peter Um, Camille Vidal, Bruno Jedynak,
Martin G. Pomper, William R. Bishail, and Sanjay K. Jain. Non-invasive pulmonary
[18F]-2-uoro-deoxy-D-glucose positron emission tomography correlates with bactericidal
activity of tuberculosis drug treatment, Antimicrobial Agents and Chemotherapy,
53(11), (2009):4879-4884.
27. Joshua Vogelstein, Brendon Watson, Adam Packer, Bruno Jedynak, Rafael Yuste, and
Liam Paninski, Spike inference from calcium imaging using sequential Monte Carlo
methods, Biophysical journal, 97(2), (2009):636-655.
28. H. Cho, H. Jönsson, K. Campbell, P. Melke, JW Williams, B. Jedynak, A.M. Stevens,
A. Groisman, and A. Levchenko. Self-Organization in High-Density Bacterial Colonies:
Ecient Crowd Control. PLoS Biol 5(11), (2007):e302. This article was featured in
ScienceDaily.
29. N. Penumetcha, B. Jedynak, M. Hosakere, E. Ceyhan, K.N. Botteron, and J.T. Ratnanather,
Segmentation of arteries in MPRAGE images of the ventral medial prefrontal
cortex, Comput Med Imaging Graph 32(1) (2008):36-43
30. H. Huang, B. Jedynak, and J. Bader, Where have all the interactions gone ? Estimating
the coverage of two-hybrid protein interaction maps, PLoS Computational
Biology, PLoS Comput Biol., 3(11), September (2007):e214. This article was selected
for Faculty of 1000 Biology.
31. B. Jedynak, and D. Karakos Finding a Needle in a Haystack: Conditions for Reliable
Detection in the Presence of Clutte, Statistics and Probability Letters, 78(5), August
2007:471-480,
32. B. Jedynak, H. Zheng and M. Daoudi, Skin Detection using Pairwise Models,Image
and Vision Computing, 23(13), pp. 1122-1130, November 2005.
33. B. Jedynak, and S. Khudanpur, Maximum Likelihood Set for Estimating a Point Mass
Function, Neural computation, 17(7), pp. 1508-1530, July 2005.
34. H. Zheng, M. Daoudi, and B. Jedynak, Blocking Adult Images Based on Statistical
Skin Detection, Electronic Letters on Computer Vision and Image Analysis, 4(2), pp.
1-14, 2004.
35. D. Geman and B. Jedynak, Model-based classication trees, IEEE Transactions on
Information Theory, 47(3), pp. 1075-1082, 2001.
36. D. Geman and B. Jedynak, An active testing model for tracking roads from satellite
images, IEEE Transactions on Pattern Analysis and Machine Intelligence , 18(1), pp.
1-14, 1996.
Refereed publications in conference proceedings:
1. Yufan He, Aaron Carass, Yihao Liu, Angeliki Filippatou, Bruno M Jedynak, Sharon
D Solomon, Shiv Saidha, Peter A Calabresi, Jerry L Prince. Segmenting retinal OCT
images with inter-B-scan and longitudinal information, Medical Imaging 2020, Image
Processing, 2020.
2. P Kearns, J Lipor, B Jedynak. Optimal Adaptive Sampling for Boundary Estimation
with Mobile Sensors, 53rd Asilomar Conference on Signals, Systems, and Computers,
1621-1625, 2019.
3. Yufan He, Aaron Carass, Yihao Liu, Bruno M Jedynak, Sharon D Solomon, Shiv
Saidha, Peter A Calabresi, Jerry L Prince. Fully convolutional boundary regression
for retina OCT segmentation, International Conference on Medical Image Computing
and Computer-Assisted Intervention 2019.
4. Anthony D Rhodes, Jordan Witte, Melanie Mitchell, Bruno Jedynak. Gaussian processes
with context-supported priors for active object localization. 2018 International
Joint Conference on Neural Networks (IJCNN).
5. He Yufan, Aaron Carass, Yeyi Yun, Can Zhao, Bruno M. Jedynak, Sharon D. Solomon,
Shiv Saidha, Peter A. Calabresi, and Jerry L. Prince. Towards Topological Correct
Segmentation of Macular OCT from Cascaded FCNs." In Fetal, Infant and Ophthalmic
Medical Image Analysis, pp. 202-209. Springer, Cham, 2017.
6. Zhen Yang, S Mazdak Abulnaga, Aaron Carass, Kalyani Kansal, Bruno M. Jedynak,
Chiadi Onyike, Sarah H. Ying, and Jerry L Prince, Landmark based shape analysis
for cerebellar ataxia classication and cerebellar atrophy pattern visualization, SPIE
Medical Imaging, 2016.
7. S.M. Abulnaga, Zhen Yang, Aaron Carass, Kalyani Kansal, Bruno M. Jedynak, Chiadi
U. Onyike, Sarah H Ying, and Jerry L Prince, A toolbox to visually explore cerebellar
shape changes in cerebellar disease and dysfunction, SPIE Medical Imaging 2016.
8. Bhavna J. Antony, Min Chen, Aaron Carass, Bruno M. Jedynak, Omar Al-Louzi,
Sharon Solomon, Shiv Saidha, Peter A. Calabresi, and Jerry L Prince, Voxel based
morphometry in optical coherence tomography: validation and core ndings, SPIE
Medical Imaging, 2016.
9. P. Rajan, P. Burlina, M. Chen, D. Edell, B. Jedynak, N. Mehta, A. Sinha, and G.
Hager, Autonomous on-board Near Earth Object detection, 2015 IEEE Applied Imagery
Pattern Recognition Workshop (AIPR).
10. Purnima Rajan, Weidong Han, Raphael Sznitman, Peter I. Frazier, and Bruno Jedynak,
Bayesian Multiple Target Localization, ICML 2015 (acceptation rate approx.
25%) : 1945-1953
11. Murat Bilgel, Bruno Jedynak, Dean F. Wong, Susan M. Resnick, and Jerry L. Prince,
Temporal Trajectory and Progression Score Estimation from Voxelwise Longitudinal
Imaging Measures: Application to Amyloid Imaging. IPMI 2015: 424-436
12. Ehsan Variani, Kamel Lahouel, Avner Bar-Hen, and Bruno Jedynak NON-adaptive
policies for 20 questions target localization, International Symposium on Information
Theory (ISIT) 2015: 775-778
13. R. Sznitman, A. Lucchi, P. I. Frazier, B. Jedynak, and P. Fua An Optimal Policy for
Target Localization with Application to Electron Microscopy, International conference
on Machine Learning, 2013 (acceptation rate approx. 25%).
14. Peter Frazier, Bruno M. Jedynak, and Li Chen, Sequential Screening: A Bayesian Dynamic
Programming Analysis Of Optimal Group-Splitting, proceedings of the Winter
Simulation Conference 2012.
15. Bruno Jedynak, Bo Liu, Andrew Lang, Yulia Gel, and Jerry Prince, A Time-Change
Method for Computing an Alzheimer's Disease Progression Score, proceedings of NIBAD'
2012 (workshop associated with MICCAI 2012)
16. R. Sznitman, A. Basu, R. Richa, James Handa, P. Gehlbach, B. Jedynak, R. H. Taylor,
and G. D. Hager, 'Unied Detection and Tracking in Retinal Microsurgery, proceedings
of MICCAI 2011 (acceptance rate of approx. 30%).
17. C. Vidal, D. Beggs, L. Younes, S. K. Jain, and B. Jedynak, Incorporating User Input
in Template-Based Segmentation , proceedings of ISBI 2011.
18. C. Vidal, J. Hewitt, S. Davis, L. Younes, S. Jain, and B. Jedynak, Template Registration
with Missing Parts: Application to the Segmentation of Tuberculosis Infected
Lungs, Proceedings of the International Symposium on Biomedical Images, SPIE'09,
April 13-17 2009.
19. C. Izard and B. Jedynak 'Statistical Deformable Model Applied to Anatomical Landmark
Detection, Proceedings of the International Symposium on Biomedical Images,
SPIE'08, February 16-21, 2008
20. B. Jedynak and D. Karakos, Unigram Language Models using Diusion Smoothing
over Graphs, in Proceedings of the 2007 Workshop on Graph-based Methods for Natural
Language Processing (TextGraphs-2), Rochester, NY, April 26, 2007.
21. C. Izard, B. Jedynak, and C. Stark, Spline-Based Probabilistic Model for Anatomical
Landmark Detection , proceedings of MICCAI'06 (acceptance rate of approx. 30%),
9(Pt 1), pp: 849-56. October 1-6, 2006.
22. C. Izard and B. Jedynak, Bayesian Registration for anatomical Landmark Registration
, proceedings of the IEEE symposium on Biomedical Imaging: From Nano to
Macro, ISBI'06, April 6-9 2006.
23. B. Jedynak, S. Khudanpur, and A. Yazgan, Estimating Probabilities from Small Samples
, proceedings of the 2005 Joint Statistical Meetings (JSM), Minneapolis, Minnesota,
August 7-11, 2005.
24. B. Jedynak, C. Izard, and C. Stark, Automatic Landmarking of Magnetic Resonance
Brain Images, proceedings of the SPIE International Symposium on Medical Imaging,
12-17 February 2005, San Diego, California, USA.
25. H. Zheng, M. Daoudi, and B. Jedynak, From Maximum Entropy to Belief Propagation:
An application to Skin Detection, Proceedings of the British Machine Vision
Conference (BMVC'04) (Acceptance rate of approx. 36%) , September 7-9, 2004.
26. B. Jedynak, H. Zheng, and M. Daoudi, Statistical Models for Skin Detection, Computer
Vision and Pattern Recognition Workshop, Madison, Wisconsin, Vol. 8, pp.
92-92, 2003.
27. B. Jedynak, H. Zheng ,and M. Daoudi, Maximum Entropy Models for Skin Detection,
Proc. Third Indian Conference On Computer Vision, Graphics and Image Processing,
ICVGIP 2002, pp. 276-281, Ahmedabad, India, December 16-18 2002,
28. M. Obeid, B. Jedynak and M. Daoudi, Image Indexing and Retrieval Using Intermediate
Features, Proc. of the ninth ACM (Association for Computing Machinery)
International Conference on Multimedia 2001, pp. 531533, Ottawa, Canada, September
30 - October 5 2001.
29. B. Jedynak, Une comparaison entre stratégies locales et globales pour la construction
d'arbres de classication, Proc. Société Française de Statistique, SFDS'2000, Fez,
Marocco, Mai 15-19 2000.
30. Y. Amit, D. Geman, and B. Jedynak, Ecient focusing and face detection, Face
Recognition: From Theory to Applications, eds. H. Wechsler et al, NATO ASI Series
F, Springer-Verlag, Berlin, pp. 157-173, 1998.
31. F. Jung, B. Jedynak, and D. Geman, Recognizing buildings in aerial images, Automatic
Extraction of Man-Made Objects from Aerial and Space Images , II, Birkhauseer
(Basel), pp. 173-182, Ascona, Switzerland, May 1997.
32. B. Jedynak and F. Fleuret, Reconnaissance d'objets 3D à l'aide d'arbres de classication
, Proc. Image'Com 96, pp. 25-30 Bordeaux, France, Mai 1996.
33. B. Jedynak and J.P. Rozé, Tracking roads in SPOT images by playing twenty questions
, Automatic Extraction of Man-Made Objects from Aerial and Space Images,
Birkhauseer (Basel) pp. 243-253, Monte-Verità, April 1995.
34. D. Geman and B. Jedynak, Shape recognition and twenty questions, Proc. Reconnaissance
des Formes et Intelligence Articielle, RFIA '94, Paris, France, 1, pp. 21-37,
1994.
35. B. Jedynak, A. Gagalowicz, and M. Haindl, Hierarchical Highway Recognition from
Satellite Images, Proc. Scandinavian Conference on Image Analysis SCIA'93, Tromso,
Norway, May 25-28, 1993.
36. D. Geman and B. Jedynak, Detection of roads in SPOT satellite images, Proc. International
Geoscience and Remote Sensing Symposium, IGARSS '91, Helsinski, Finland,
June 1991.
Non referreed publications:
1. B. Jedynak, Chercher une aiguille dans une botte de foin, Publication IRMA , 56-XII,
December 2001.
2. B. Jedynak, Stratégies visuelles et jeu des 20 questions, CNRS-INFO, July 2000.