***** REPOSITORY OF EXTERNAL PROJECTS *****

These are screenshots taken by me (the site owner). The references for the content represented can be found further down the page.

References

S1

http://104.154.150.186/user/a05998ecab18c92bf053d24b70b599a7/notebooks/demo.ipynb

http://briansimulator.org/electrophysiology/

http://www.nest-simulator.org/index.html

Open Science CBS Neuroimaging Repository: Sharing ultra-high - NCBI

https://www.ncbi.nlm.nih.gov/pubmed/26318051

by CL Tardif - ‎2016 - ‎Cited by 1 - ‎Related articles

Neuroimage. 2016 Jan 1;124(Pt B):1143-8. doi: 10.1016/j.neuroimage.2015.08.042. Epub 2015 Aug 25. Open Science CBS Neuroimaging Repository: Sharing ...

NITRC: Welcome

https://www.nitrc.org/

NITRC facilitates finding and comparing structural and functional neuroimaging tools and resources. Also provides forums and a NITRC community wiki.

‎Member login · ‎NITRC: Top Downloads · ‎About NITRC · ‎Browse By Most Active

Cognitive neuroscience neuroimaging repository for ... - ScienceDirect

www.sciencedirect.com/science/article/pii/S1053811915007491

by QR Razlighi - ‎2015 - ‎Related articles

24 Aug 2015 - Highlights. •. A comprehensive cross-sectional cognitive aging neuroimaging repository is presented. •. The number of participants in each fMRI ...

List of neuroscience databases - Wikipedia

https://en.wikipedia.org/wiki/List_of_neuroscience_databases

A number of online neuroscience databases are available which provide information regarding ... Alzheimer's Disease Neuroimaging Initiative (ADNI), Structural MRI images, Human, Macroscopic, MRI datasets, Healthy and Alzheimer's Disease, Yes .... The PAIN Repository, Structural, Diffusion and Functional MRI datasets ...

Open Science CBS Neuroimaging Repository: Sharing Ultra-High ...

https://www.researchgate.net/.../281309586_Open_Science_CBS_Neuroimaging_Reposi...

Open Science CBS Neuroimaging Repository: Sharing Ultra-High-Field MR Images of the Brain on ResearchGate, the professional network for scientists.

Cognitive Neuroscience Neuroimaging Repository for the Adult Lifespan

https://www.researchgate.net/.../282154306_Cognitive_Neuroscience_Neuroimaging_Re...

With recent advances in neuroimaging technology, it is now possible to image human brain function in vivo, which revolutionized the cognitive neuroscience ...

Deep mind

Tensorflow

https://devblogs.nvidia.com/parallelforall/deep-learning-nutshell-core-concepts/

http://parse.ele.tue.nl/mpeemen

Deep Convolutional Neural Networks Visual System

http://nuit-blanche.blogspot.co.uk/2016/11/seeing-it-all-convolutional-network.html

http://www.nature.com/neuro/journal/v19/n3/full/nn.4244.html?WT.feed_name=subjects_visual-system

S2

https://github.com/deepmind/lab/commit/92aa85f406c788e1a8c17f2add4d9031e7230637

www.deepmind.com

https://github.com/Harry-Muzart

3D brain

http://www.g2conline.org/

Genes to COgntiion

http://www.cshl.edu/

https://brainder.org/research/brain-for-blender/

Download cortical meshes

Clara.io

3D model library

https://github.com/lucklab/erplab/wiki/Filtering-EEG-and-ERPs:-Tutorial

event related potentials simulation

Allen Institute Brain Atals

Egen search

http://human.brain-map.org/microarray/search/show?exact_match=false&search_term=cortex&search_type=gene

Differential search – parrahiccpoanml gyrus, hippocampal formation

http://human.brain-map.org/microarray/search/show?domain1=4249&domain2=4242&selected_donors=9861,10021,12876,14380,15496,15697&search_type=differential&page_num=0

Mouse brain connectivity

http://connectivity.brain-map.org/

http://www.thehpp.org/resources.php

http://www.proteinatlas.org/search/insulin

http://bonneaulab.bio.nyu.edu/structure.html

http://interactome.dfci.harvard.edu/S_cerevisiae/

http://www.humanconnectomeproject.org/gallery/

The Connectome Viewer connects Multi-Modal Multi-Scale Neuroimaging and Network Datasets For Analysis and Visualization in Python.

http://cmtk.org/viewer/

https://www.braininitiative.nih.gov/

The Brain Research through Advancing Innovative Neurotechnologies® (BRAIN)

https://www.humanbrainproject.eu/en_GB/sp5

https://neurorobotics.net/

Subprojects Overview

Platforms Overview

Platform Access

SP1 Mouse Brain Organisation

SP2 Human Brain Organisation

SP3 Systems and Cognitive Neuroscience

SP4 Theoretical Neuroscience

SP5 Neuroinformatics Platform

SP6 Brain Simulation Platform

SP7 High Performance Analytics and Computing Platform

SP8 Medical Informatics Platform

SP9 Neuromorphic Computing Platform

SP10 Neurorobotics Platform

SP11 Central Services

SP12 Ethics and Society

Co-Design Projects

https://282-1235740-gh.circle-artifacts.com/0/home/ubuntu/nilearn/doc/_build/html/auto_examples/connectivity/plot_dict_learning_resting_state.html

Nilearn:

Machine learning for Neuro-Imaging in Python

http://www.geisingeradmi.org/care-innovation/labs/neuroimaging-analytics/

https://research.google.com/bigpicture/

https://articles.uie.com/data_visualization_tools/

Processing.js project

Gephi

https://en.wikipedia.org/wiki/C_(programming_language)

https://www.planet-source-code.com/vb/default.asp?lngWId=3

C++

HTML Logo | by bkanavel HTML Logo | by bkanavel

Hiverhq.com google apps

S3

http://www.opensourcebrain.org/projects?spine=None#welcomeMainContainer

http://www.opensourcebrain.org/projects?spine=None#cells

http://utdallas.edu/~faruckm/Evolutionary_Information_Lab/Software.html

https://www.turbosquid.com/3d-model/neuron xxxx

http://www.neuroconstruct.org/models/index.html#CA1PyramidalCell-N10022

http://www.neuroconstruct.org/index.html

Ucl biophysical neural network mdoellign softwarte

http://www.tnb.ua.ac.be/models/index.shtml

Antwerp ther neurbio and enrueng

http://atlas.gcsc.uni-frankfurt.de/~neugen/examples.html

http://www.neuron.yale.edu/neuron/download

https://senselab.med.yale.edu/ModelDB/FindBySimulator.cshtml

http://neuroph.sourceforge.net/screenshots.html

http://www.neurogems.org/neosim2/Tutorials/Tutorial6.html

NEUROSIM tutorials 3d visualaitons

http://homepages.herts.ac.uk/~comqvs/research.html

Information Processing in Multi-scale Models of Neurons and Neural Networks

http://www.kurzweilai.net/a-computer-like-brain-mechanism-that-makes-sense-of-novel-situations

Kurzweil accelerating intelligence

Uni Colorado boulder

http://www.dimkovic.com/

https://www.youtube.com/watch?v=PXTLXXdDVMM

Simulation of Spiking Thalamocortical Brain Network 3 - 3D View, 1M Neurons, 189M Synapses

http://www.genesis-sim.org/GENESIS/

http://steps.sourceforge.net/STEPS/download.php

Computational Neuroscience Unit

Okinawa Institute of Science and Technology

http://www.wardsystems.com/index.asp

http://www.dimkovic.com/node/50 - circuit

SpikeFun 1.16 - Bugfix for Big Haswell Porcessor Group Bug (>64 logical cores)

S4

http://www.nncn.de/de/bernstein-conference/past-conferences/2015/satellite-workshops/in-vitro-neuronal-networks-from-2d-to-3d

http://www.3dneuron.eu/?q=openpos

http://lumify.io/

3d big data visualisation

http://www.informationisbeautiful.net/

http://www.visualcomplexity.com/vc/project_details.cfm?id=953&index=953&domain=

https://www.computer.org/csdl/trans/tp/2013/01/ttp2013010221-abs.html

https://www.neuroml.org/getneuroml

https://github.com/NeuroML/NeuroML2/blob/master/examples/NML2_FullNeuroML.nml

https://sourceforge.net/projects/neuroml/?source=typ_redirect

https://grey.colorado.edu/emergent/index.php/Comparison_of_Neural_Network_Simulators

http://neuralensemble.org/trac/PyNN/wiki/HighLevelAPI

https://link.springer.com/chapter/10.1007/978-94-007-3858-4_16#page-1

http://www.ra.cs.uni-tuebingen.de/downloads/SNNS/

http://cortex.cs.may.ie/tools/spikeNNS/index.html

https://netwerkt.wordpress.com/page/2/

http://www.devitep.de/Software/NeuralNetworkSimulator

http://www.framsticks.com/

Evoluting artificial life

http://home.earthlink.net/~perlewitz/sftwr.html

repository

https://www.semanticscholar.org/paper/-SNN3DViewer-3D-Visualization-Tool-for-Spiking-Kasinski-Pawlowski/3ace6149934319eb9cd9937fbd03e4f2b99b59ff

http://www.neurogems.org/

http://www.cnsorg.org/software

http://www.thingiverse.com/thing:17773

3d cad cam rpos, inMoov – DIY robotics

DIY bionics

http://www.hansonrobotics.com/robot/sophia/

DIY biolabs

Genetic engineeeing

Biotech hobbyings

https://diybio.org/

http://collections.plos.org/open-source-toolkit-hardware (no pics)

http://www.oreilly.com/biocoder/

BioCoder is the newsletter of that revolution. It’s about biology as it moves from research labs into startup incubators, hacker spaces, and even homes. It’s about a very old programming language that we’re just beginning to understand, and that’s written in a code made up of organic chemicals. It’s the product of a sharing community of scientists that stretches from grade school to post docs and university faculty.

BioCoder features:

Articles about interesting projects and experiments

Articles about tools, both those you buy and those you build

Visits to DIYbio laboratories

Profiles of key people in the community

Announcements of events and other items of interest

Safety pointers and tips about good laboratory practice

Anything that’s interesting or useful: you tell us!

BMI

http://www.cell.com/trends/biotechnology/fulltext/S0167-7799(10)00138-1

http://cacm.acm.org/magazines/2011/10/131392-improving-brain-computer-interfaces/abstract

Here the arm can be paralysed, or a robot arm.

https://news.brown.edu/articles/2012/05/braingate2

Paralysis control robotic arms by thought, potentially an exoskeleton or endo skeleton.

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