Bayerisches Hauptstaatsarchiv on GenWiki: http://wiki-de.genealogy.net/Bayerisches_Hauptstaatsarchiv
Staatsarchiv Wurzburg. Landgericht aelterer Ordnung Alzenau 1816-1862: Alzenau Contains a name index (including emigrants). This record is an index to FHL films 2448865, 2448947, and 2448948. The finding aid in the archives states the following as one example from film 2448865:
Case No. 194 - Petition of Balthasar Stickler from Alzenau to be released from Bavarian citizenship. Examining the film you will find more detailed information: Balthasar Stickler was single, a linen weaver, the son of Peter Stickler of Alzenau and was born 31 October 1814. He is seeking permission to enter the Prussian Regierung Koblenz. His deceased wife is also named as well as his son who was born 17 February 1837. Additional information is also included.
Case No. 195 - Petition for emigration of Adam Buettner of Huckelheim to travel to North America.
Staatsarchiv Wurzburg. Landgericht aelterer Ordnung Ochsenfurt Ochsenfurt
Staatsarchiv Wurzburg. Landgericht aelterer Ordnung Schollkrippen
Landgerichte älterer Ordnung Kaltenberg [Do a Google search and the pdf will appear]
Hochstift Fulda: Fulda
Bad Kissingen Finding Aid
Stadtamhof Findmittel (finding aid)
Lichtenfels Findmittel
Bayerisches Hauptstaatsarchiv Reichskammergericht. Bd. 9 Archiv Inventory
Herman History Institute Reference Guide 16
Archives in Germany http://www.kirchenbuchportal.de/visit.htm
Rosenheim Stadtarchiv
Sources for Family History research in the city archive of Rosenheim are explained in a publication of the research group for family history at this link: Family History sources in the city archive of Rosenheim
Landeskirchliches Archiv der Evangelisch–Lutherischen Kirche in Bayern (LAELKB). Nürnberg
Biebinger, Wilhelm: Pfarrbücherverzeichnis für die Evang.–Lutherische und Evang.–Reformierte Kirche des rechtsrheinischen Bayerns (Pfarrbücherverzeichnisse für das rechtsrheinische Bayern Heft 8), München 1940. [FHL Library Book 943.3 K23p no. 8