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I am an Assistant Professor joint between Math and Population Health Sciences departments at the University of Wisconsin - Madison and a current NIMH K01 awardee. I am building a cross-disciplinary research program in math and psychiatry that examines all units of analysis: genes, brain, behavior, symptoms, and treatment. My goal is to demonstrate that mathematics can aid discovery in psychiatry by generating stronger, more reliable conclusions that link observations from genes to treatment. As an applied mathematician working in Psychiatry, team science is a central aspect of my research. I'm part of the Women's Mental Health Program at UW-Madison and am fortunate to have fantastic clinical collaborators.


Amy Louise Cochran

cochran4 at wisc dot edu

curriculum vitae

Publications

(see Google scholar for full list)

2020

Cochran AL, Nieser, K, Forger DB, Zollner S, McInnis MG. Gene-set enrichment with mathematical biology (to appear). GigaScience. Available at bioRxiv.

Cochran, AL, Pingeton, BC, Goodman, SH, Laurent, H, Rathouz, P, Newport, DJ, Stowe ZN (to appear). A transdiagnostic approach to conceptualizing depression across the perinatal period in a high-risk sample. Journal of Abnormal Psychology.

Kroska, E, Hoel, S, Victory, A, Murphy, S, McInnis, M, Stowe, Z, Cochran, AL (to appear). Optimizing Acceptance and Commitment Therapy Microintervention via a Mobile App with Two Cohorts: Protocol for Micro-Randomized Trials. JMIR: Research Protocols.

Victory, A, Letkiewicz, A, Cochran, AL (to appear). Digital solutions to shape mood and behavior among individuals with mood disorders. Current Opinions in Systems Biology.

Alverez, S, Cochran, A, Patterson, B, Shah, M, Smith, M, Zayas-Cabán (to appear). The average effect of ED admissions on readmissions and mortality for older adults with chest pain. Medical Care.

Nishimura, J, Cochran AL. Rescorla-Wagner model with sparse dynamic attention. Bulletin in Math Biology. 82, 69.

Van Til K, McInnis MG, Cochran AL. A Comparative Study of Engagement in Mobile and Wearable Health Monitoring for Bipolar Disorder. Bipolar Disorders. 22, 182-190.

2019

Letkiewicz, AM, Cochran AL, Cisler, JM. Severe Sexual Abuse Reduces Frontoparietal Network Activity during Model-Based Reinforcement Learning Updates. PsyArXiv. Available at PsyArXiv.

Cochran AL, Cisler JM (2019). A flexible and generalizable model of online latent-state learning. PLoS Computational Biology. 15 (9), e1007331. Also available at bioarxiv.

Cochran AL, Rathouz PJ, Kocher K, Zayas-Cabán G (2019). A latent variable approach to potential outcomes for emergency department admission decisions. Statistics in Medicine. 38: 3911--3935


2018

Anghel, C, Archer, K, Chang J-M, Cochran, AL, Radulescu, A, Salafia, CM, Turner, R, Yacoubou Djima, K, Zhong L (alphabetical order) (2018). Placental vessel extraction with shearlets, Laplacian eigenmaps, and a conditional generative adversarial network. In: Understanding Complex Biological Systems with Mathematics. Springer.

Anghel, C, Archer, K, Chang J-M, Cochran, AL, Radulescu, A, Salafia, CM, Turner, R, Yacoubou Djima, K, Zhong L (alphabetical order) (2018). Simulations of the vascular network growth process for studying placenta structure and function associated with autism. In: Understanding Complex Biological Systems with Mathematics. Springer.

Cochran, AL, Belman-Wells, L, McInnis, M (2018) Engagement Strategies for Self-Monitoring Symptoms of Bipolar Disorder with Mobile and Wearable Technology: Protocol for a Randomized Control Trial. JMIR Research Protocols. 7(5):e130.

Cochran, AL, Tarini, B, Klein, M, and Zayas-Caban, G (2018). Newborn Screening Collection and Delivery Processes in Michigan Birthing Hospitals: Strategies to Improve Timeliness. Maternal and Child Health Journal. 1-8.

Kalmbach, DA, Fang, Y, Arnedt, JT, Cochran, AL, Deldin, PJ, Kaplin, AI and Sen, S (2018). Effects of Sleep, Physical Activity, and Shift Work on Daily Mood: a Prospective Mobile Monitoring Study of Medical Interns. Journal of General Internal Medicine. 1-7.

Cochran AL, Schultz A, McInnis MG, Forger DB (2018). Testing frameworks for personalizing bipolar disorder. Translational Psychiatry. 8.

2017

Cochran AL, Schultz A, McInnis MG, Forger DB (2017). A comparison of mathematical models of mood in bipolar disorder. In: Érdi P, Sen Bhattacharya B, Cochran A (eds) Computational Neurology and Psychiatry. Springer Series in Bio-/Neuroinformatics, vol 6. Springer.

Érdi P, Bhattacharya B, Cochran, A (Eds.) (2017). Computational neurology and psychiatry. Springer Series in Bio-/Neuroinformatics, vol 6. Springer.

2016

Cochran AL, McInnis MG, Forger DB (2016). Data-driven classification of bipolar I from longitudinal course of mood. Translational Psychiatry. 6(10), e912.

Walch O, Cochran AL, Forger DB (2016). A global quantification of "normal" sleep schedules using smart-phone data. Science Advances. 2(5), e1501705.

Chavis, J, Cochran, AL, Kocher, K, Washington, V, and Zayas-Cabán, G (2016). A simulation model of patient flow through the emergency department to determine the impact of a short stay unit on hospital congestion. Proceedings of the 2016 Winter Simulation Conference, 1982-1993 .

2015

Cochran, AL, Gao, Y (2015). A model and simulation of uterine contractions. Mathematics and Mechanics of Solids. 20, pp. 540-564.

2014

Leineweber, M, Westborn, J, Cochran, AL, Choi, J, Gao, Y (2014). Averaging improves strain images of the biceps-brachii using quasi-static ultrasound elastography. British Journal of Radiology. 87, 20130624.

Cochran, AL, Gao, Y (2014). A numerical method to detect soft tissue injuries from estimated displacements. Inverse Problems in Science and Engineering. 23, pp 115-177.

2013

Cochran, AL, Gao, Y (2013). An ultrasound elastography method for examining the anterior cruciate ligament. Natural Science. 5, pp 23-31.