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Thousand Variant Callers
Home
Survey
SNV survey
CNV survey
SV survey
Other survey
Unsorted
Benchmarking
Comparison Studies
Metacallers & Infrastructures
Validation Strategies
Benchmarking Tools
Caller Parameters
Benchmarks
NIST GiaB Trios
Barcelona/ICGC real tumor/normal
Craig/TGRI tumor/normal cell line
Horizon/Acrometrix/SeraCare engineered tumor/normal
Sanger Institute CEPH trio
Illumina Platinum Genome
DREAM synthetic tumor/normal
WashU AML real tumor/normal
Benchmarked
ACMG Sanity Check
GDC Callers
Pipelines
Thousand Variant Callers
Home
Survey
SNV survey
CNV survey
SV survey
Other survey
Unsorted
Benchmarking
Comparison Studies
Metacallers & Infrastructures
Validation Strategies
Benchmarking Tools
Caller Parameters
Benchmarks
NIST GiaB Trios
Barcelona/ICGC real tumor/normal
Craig/TGRI tumor/normal cell line
Horizon/Acrometrix/SeraCare engineered tumor/normal
Sanger Institute CEPH trio
Illumina Platinum Genome
DREAM synthetic tumor/normal
WashU AML real tumor/normal
Benchmarked
ACMG Sanity Check
GDC Callers
Pipelines
More
Home
Survey
SNV survey
CNV survey
SV survey
Other survey
Unsorted
Benchmarking
Comparison Studies
Metacallers & Infrastructures
Validation Strategies
Benchmarking Tools
Caller Parameters
Benchmarks
NIST GiaB Trios
Barcelona/ICGC real tumor/normal
Craig/TGRI tumor/normal cell line
Horizon/Acrometrix/SeraCare engineered tumor/normal
Sanger Institute CEPH trio
Illumina Platinum Genome
DREAM synthetic tumor/normal
WashU AML real tumor/normal
Benchmarked
ACMG Sanity Check
GDC Callers
Pipelines
Barcelona/ICGC real tumor/normal
Barcelona/ICGC Real tumor/normal
two tumor-normal paired data sets (chronic lymphocytic leukaemia, medulloblastoma)
both have high degree of tumor purity and low degree of structure variation
Study
here
; Press release
here
Their sequencing data are
available with login credentials
.
Ongoing application for access
here
Gold Set (.xls containing .vcfs) from the study is
here
:
The first four tables in the xls file are
MB - medulloblastoma
CCL - chronic lymphocytic leukaemia
SSM - somatic single-base mutation
SIM - somatic insertion/deletion mutation
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