Publications

Before 2006, 2006-2011, 2012-2016


2017-present:

P. Zhang, S. Tripathi, H. Trinh, M. S. Cheung, "Opposing intermolecular tuning of Ca2+ affinity for calmoduin by Neurogranin and CaMKII peptides", Biophysical Journal. 112, 1105–1119 (2017). Cover Art

O.N. Starovoytov, P. Zhang, P. Cieplak, M.S. Cheung, "Induced Polarization Restricts Conformational Distribution of a Light-Harvesting Molecular Triad in the Ground State", Phys. Chem. Chem. Phys. 19, 22969-22980 (2017).

Q. Wang, M.R. Diehl, B. Jana, M.S. Cheung, A.B. Kolomeisky, J.N. Onuchic, "Molecular origin of the weak susceptibility of kinsein velocity to loads and its relation to the collective behavior of kinesins", Proc. Natl. Acad. Sci. 114, E8611-E8617 (2017).

F. C. Zegarra, D. Homouz, Y. Eliaz, A. G. Gasic, M. S. Cheung, “The impact of hydrodynamic interactions on protein folding rates depends on temperature”, Phys. Rev. E, 97, 032402 (2018). *Selected for Editor's suggestion.

M. Misiura, Q. Wang, M. S. Cheung, A. B. Kolomeisky, "Theoretical investigation of the role of mutation in dynamics of kinesin motor protein", ", J. Phys. Chem. B, 122, 4653-4661 (2018).

X. Sun, P. Zhang, Y. Lai, K. Williams, M. S. Cheung, B. Dunietz, E. Geva, “A computational study of charge transfer dynamics in the carotenoid porphyrin C60 molecular triad solvated in explicit tetrahydrofuran and its spectroscopic signature”, J. Phys. Chem. C, 122, 11288–11299, (2018).

M. S. Cheung, A.G. Gasic "Towards Developing Principles of Protein Folding and Dynamics in the Cell", Phys. Biol. 15, 063001, (2018).

Q. Wang, B. Janab, M. R. Diehl, M. S. Cheung, A. B. Kolomeisky, J. N. Onuchic, “Molecular mechanisms of the interhead coordination by interhead tension in cytoplasmic dyneins”, Proc. Natl. Acad. Sci. (2018) https://doi.org/10.1073/pnas.1806688115.

J. C. Ezerski, M. S. Cheung, "CATS: a tool for clustering the ensemble of intrinsically disordered peptides on a flat energy landscape", accepted by JPCB (2018).

S. Bhandari, M. S. Cheung, E. Giva, L. Kronik, B. D. Dunietz, "Fundamental gaps of condensed-phase organic seminconductors from single-molecule calculations using polarizable consistent optimally tuned screened range-separated hybrid functionals", accepted by JCTC (2018).

M. B. Prigozhin, A. G. Gasic, D. Homouz, AJ. Wirth, M. Gruebele, M. S. Cheung, “Critical phenomena in the temperature-pressure-crowding phase diagram of a large protein.” submitted (2017).

K. Dave, A. G. Gasic, M. S. Cheung, M. Gruebele, “Competition of folding and inter-domain aggregation in tethered WW domains”, submitted (2018).

M. Ghane, S. Chandrasekaran, M. S. Cheung, “Gecko: Hierarchical heterogeneous portable shared memory abstraction”, submitted (2018).

M. Ghane, M. S. Cheung, S. Chandrasekaran, “Pointerchain: Tracing Pointers to Their Roots”, submitted (2018).

F. C. Zegarra, D. Homouz, M. Kovermann, A. G. Gasic, L. Babel, P. Wittung-Stafshede, M. S. Cheung, “Crowding-induced elongated conformation of urea-unfolded apoazurin explained by in silico computations: Key role of crowder shape", submitted (2018).

G. Qin, J. M. Choi, H. Lin, A. G. Gasic, M. S. Cheung, S. Y. Jung, and C. Cai, "Comparison of timsTOF Pro and Fusion orbitrap mass spectrometers for deep shotgun proteomics of HeLa lysate digest" , submited (2018).