Publications

#: Equal contribution

*: Corresponding author

29. Resetting Induces Memory Loss in Non-Markovian Processes. Debasish Saha and Rati Sharma. (Submitted)

28. Guanylyl cyclase signaling in AFD neurons regulates systemic stress resilience in Caenorhabditis elegans. Abhilasha Batra and Rati Sharma. (Submitted)

bioRxiv preprint: https://www.biorxiv.org/content/10.1101/2025.07.08.663649v1 

27. Neuronal decoding of temperature signals in Caenorhabditis elegans. Abhilasha Batra and Rati Sharma. (Submitted)

bioRxiv preprint: https://www.biorxiv.org/content/10.1101/2025.01.27.634994v1 

26. A first passage time study of bacterial eradication under the influence of antibacterial agents. Shivangi Chourasia #, Nafisa Siddiqui #, Aishani Ghosal # and Rati Sharma*. (Submitted)

25. Fluctuating signal and reversibility limit information and entropy in a MAPK signalling cascade. Harshita Saxena and Rati Sharma*. Phys Chem Chem Phys (2025).

24. A Quantitative analysis of cGMP mediated chemotaxis and short term behavior in Caenorhabditis elegans. Khursheed Ahmad Khan and Rati Sharma* (Submitted)

23. mRNA translation from a unidirectional traffic perspective. Binil Shyam T V and Rati Sharma*. Physica A 637, 129574 (2024). Preprint: arXiv:2312.12062

22. Work distribution of a colloid in an elongational flow field and under Ornstein-Uhlenbeck noise. Debasish Saha and Rati Sharma*. Physical Review E 109, 014111 (2024). Preprint: arXiv:2311.15768

21. Unveiling Autophagy and Aging through Time-Resolved Imaging of Lysosomal Polarity with a Delayed fluorescent emitter. Subhadeep Das, Abhilasha Batra, Subhankar Kundu, Rati Sharma and Abhijit Patra*. Chemical Science 15, 102 (2024) PDF

20. Deep-Worm-Tracker: Deep Learning Methods for Accurate Detection and Tracking for Behavioral Studies in C. elegans. Shoubhik Chandan Banerjee, Khursheed Ahmad Khan and Rati Sharma*. Applied Animal Behaviour Science 266, 106024 (2023). 

Preprint version: Link

GitHub link of the software developed for this work: https://github.com/knaticat/Deep-Worm-Tracker

19. Microfluidics based bioimaging with cost-efficient fabrication of multi-level micrometer-sized trenches. Anand Anilkumar#, Abhilasha Batra#, Santanu Talukder* and Rati Sharma*. Biomicrofluidics 17, 034103 (2023). Accepted PDF

18. A machine learning based analysis to probe the relationship between odorant structure and olfactory behaviour in C. elegans. Aayushi Vishnoi and Rati Sharma*. Preprint available on bioRxiv.

17. Malaria detection from RBC images using shallow Convolutional Neural Networks. Subrata Sarkar, Rati Sharma and Kushal Shah. Preprint avilable on arXiv.

16. Lessons learned from two decades of modeling the heat shock response. Ayush Ranawade, Rati Sharma and Erel Levine. Biomolecules 12, 1645 (2022)

15. Persistent correlation in cellular noise determines longevity of viral infections. Abhilasha Batra#, Shoubhik Chandan Banerjee# and Rati Sharma*. J. Phys. Chem. Lett. 13, 7252 (2022) 

GitHub link for code developed to carry out the numerical simulations for this paper: https://github.com/cebpLab/Immune-Response  

14. Extrinsic noise effects on ribosomal traffic during the translation process. Rati Sharma*. J. Stat. Mech: Theory Exp. 053504 (2022).

13. Transcription factors and chaperone proteins play a role in launching a faster response to heat stress and aggregation. Sushmita Pal and Rati Sharma*. Comput. Biol. and Chem. 93, 107534 (2021)

12. A near analytic solution of a stochastic immune response model considering variability in virus and T cell dynamics. Abhilasha Batra and Rati Sharma*.  J. Chem. Phys. 154, 195104 (2021)

Before joining IISER Bhopal

11. Biospark: Scalable analysis of large numerical data sets from biological simulations and experiments using Hadoop and Spark Max Klein, Rati Sharma, Christopher Bohrer and Elijah Roberts Bioinformatics, 33, 303 (2017)

10. Gradient sensing by a bistable regulatory motif enhances signal amplification but decreases accuracy in individual cells Rati Sharma and Elijah Roberts Phys. Biol. 13, 036003 (2016)

9. The dynamics of simple gene network motifs subject to extrinsic fluctuations Elijah Roberts, Shay Be'er, Christopher Bohrer, Rati Sharma and Michael Assaf Phys. Rev. E 92, 062717 (2015)

8. Reaction dynamics under confinement: an exact path integral treatment of a two-stage model of stochastic gene expression Rati Sharma and Binny J. Cherayil J. Stat. Mech. P10029 (2013)

7. Interfacial growth as a model of tube-width heterogeneities in melts of stiff polymers Rati Sharma and Binny J. Cherayil J. Chem. Phys. 138, 244911 (2013)

6. Subdiffusion in hair bundle dynamics: The role of protein conformational fluctuations Rati Sharma and Binny J. Cherayil J. Chem. Phys. 137, 215102 (2012)

5. Confinement and and viscoelastic effects on chain closure dynamics Pinaki Bhattacharyya, Rati Sharma and Binny J. Cherayil J. Chem. Phys. 136, 234903 (2012)

4. The force distribution of an oscillator model of polymer stretching at constant velocity Rati Sharma and Binny J. Cherayil J. Stat. Mech: Theory and Experiment P05019 (2012)

3. Distribution of transverse chain fluctuations in harmonically confined semi-flexible polymers Rati Sharma and Binny J. Cherayil J. Chem. Phys. 136, 184902 (2012)

2. Work fluctuations in an elastic dumbbell model of polymers in planar elongational flow Rati Sharma and Binny J. Cherayil Phys. Rev. E 83, 041805 (2011)

1. Polymer melt dynamics: Microscopic roots of fractional viscoelasticity Rati Sharma and Binny J. Cherayil Phys. Rev. E 81, 021804 (2010)