Dr. Walter Ian Lipkin (born 1952)

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Wikipedia 🌐 W. Ian Lipkin

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Education   University of Chicago Laboratory School

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Website    www.mailman.columbia.edu

W. Ian Lipkin (born November 18, 1952) is the John Snow Professor of Epidemiology at the Mailman School of Public Health at Columbia University and a professor of Neurology and Pathology at the College of Physicians and Surgeons at Columbia University. Lipkin is also director of the Center for Infection and Immunity, an academic laboratory for microbe hunting in acute and chronic diseases. 

Education

Lipkin was born in Chicago, Illinois, where he attended the University of Chicago Laboratory School and was president of the student board in 1969. He relocated to New York and earned his BA from Sarah Lawrence College in 1974. At Sarah Lawrence, he "felt that if I went straight into cultural anthropology after college I’d be a parasite. I’d go someplace, take information about myths and ritual, and have nothing to offer. So I decided to become a medical anthropologist and try to bring back traditional medicines. Suddenly I found myself in medical school."[1] Returning to his hometown Chicago, Lipkin earned his MD from Rush Medical College, in 1978. He then became a clinical clerk at the UCL Institute of Neurology in Queen Square, London, on a fellowship, and an intern in Medicine at University of Pittsburgh (1978–1979). He completed a residency in Medicine at University of Washington (1979–1981), and completed a residency in Neurology at University of California, San Francisco (1981–1984). He conducted postdoctoral research in microbiology and neuroscience at The Scripps Research Institute, from 1984 to 1990, under the mentorship of Michael Oldstone and Floyd Bloom. In his six years at Scripps, Lipkin became a senior research associate upon completing his postdoctoral work, and was president of the Scripps' Society of Fellows in 1987.

Career

Lipkin has earned the reputation of a "master virus hunter" for to his speed and innovative methods of identifying new viruses, and has been lauded by National Institute of Allergy and Infectious Diseases director [Dr Anthony Stephen Fauci (born 1940)]. As director of the Center for Infection and Immunity at the Mailman School of Public Health; Lipkin, from the onset of the COVID-19 pandemic, has led CII researchers collaborating with researchers at Sun Yat-sen University in China. Dr. Lipkin had also advised the Chinese government and the World Health Organization (WHO) during the 2002–2004 SARS outbreak.[2][3] Dr. Lipkin described his own infection with the SARS-CoV-2 virus, beginning mid-March 2020, which resulted in a case of COVID-19 and necessitated his recovering from the illness at home, on the podcast This Week in Virology.[4]

Lipkin was the Louise Turner Arnold Chair in the Neurosciences[5] at the University of California, Irvine from 1990 to 2001 and was recruited shortly thereafter by Columbia University. He began his current tenure at Columbia as the founding director of the Jerome L. and Dawn Greene Infectious Disease Laboratory from 2002 to 2007, which transitioned to the John Snow Professorship he holds at present.

A physician-scientist, Lipkin is internationally recognized for his work with West Nile virus and SARS, as well as advancing pathogen discovery techniques by developing a staged strategy using techniques pioneered in his lab. These molecular biological methods, including MassTag-PCR, the GreeneChip diagnostic, and High Throughput Sequencing, are a major step towards identifying and studying new viral pathogens that emerge locally throughout the globe. A major node in a global network of investigators working to address the challenges of pathogen surveillance and discovery, Dr. Lipkin has trained over 30 internationally based scientists in these state-of-the art diagnostic techniques.

Lipkin is the director for the Center for Research in Diagnostics and Discovery (CRDD), under the NIH Centers of Excellence for Translational Research program.[6] The CRDD brings together leading investigators in microbial and human genetics, engineering, microbial ecology and public health to develop insights into mechanisms of disease and methods for detecting infectious agents, characterizing microflora and identifying biomarkers that can be used to guide clinical management. Lipkin was previously the Director of the Northeast Biodefense Center,[7] the Regional Center of Excellence in Biodefense and Emerging Infectious Diseases which comprised 28 private and public academic and public health institutions in New York, New Jersey and Connecticut. Within this consortium, his research focused on pathogen discovery, using unexplained hemorrhagic fever, febrile illness, encephalitis, and meningoencephalitis as targets. He is the Principal Investigator of the Autism Birth Cohort, a unique international program that investigates the epidemiology and basis of neurodevelopmental disorders through analyses of a prospective birth cohort of 100,000 children and their parents. The ABC is examining gene-environment-timing interactions, biomarkers and the trajectory of normal development and disease. Lipkin also directs the World Health Organization Collaborating Centre for Diagnostics in Zoonotic and Emerging Infectious Diseases, the only academic center, and one of two in the US (the other is CDC), that participates in outbreak investigation for the WHO.

Lipkin was co-chair of CDC Steering Committee of the National Biosurveillance Advisory Subcommittee (NBAS).[8] The NBAS was established in response to Homeland Security Presidential Directive 21 (HSPD-21),[9] "Public Health and Medical Preparedness."

He is Honorary Director of the Beijing Infectious Disease Center, Chair of the Scientific Advisory Board of the Institut Pasteur de Shanghai and serves on boards of the Australian Biosecurity Cooperative Research Centre for Emerging Infectious Disease, the Guangzhou Institute for Biomedicine and Health, the EcoHealth Alliance [EcoHealth President is Dr. Peter Daszak (born 1965) ], Tetragenetics, and 454 Life Sciences Corporation.

Lipkin served as a science consultant for the film Contagion.[11] The film has been praised for its scientific accuracy.

Early career

While not quite a medical anthropologist, Lipkin specializes in infectious diseases and their neurological impact. His first professional publication came in 1979 during the time of his fellowship in London as a letter to the Editor at the Archives of Internal Medicine (now JAMA Internal Medicine), where he poses a potential correlation between eosinopenia and bacteremia in diagnostic evaluations for a bacteremic patient.[12] While at UCL, he worked with John Newsom-Davis, who was utilizing plasmapheresis to better understand myasthenia gravis, a neuromuscular disease.[13]

In 1981, Lipkin began his neurology residency and worked in a local San Francisco clinic, which was about the time AIDS began to affect the local city population. Because of the social view of homosexual people at the time, very few clinicians would see patients with these symptoms. He "was watching many patients fall ill with AIDS. It took years for scientists to discover the virus responsible for the disease... 'I saw all of this, and I said, 'We have to find new and better ways to do this.'"[14] It was during this epidemic that Lipkin took the approach of looking for a virus’ genes instead of looking for antibodies in infected people as a way to speed up the diagnosis process. By the mid-1980s, Lipkin had published two papers specifically about AIDS research[15][16] and transitioned into utilizing a more pathological approach to virus identification. He identified AIDS-associated immunological abnormalities and inflammatory neuropathy, which he showed could be treated with plasmapheresis and demonstrated early life exposure to viral infections affects neurotransmitter function.

Bornavirus

In 1989, Lipkin was the first to identify a microbe using purely molecular tools.[17][18] During his time as Chair at UC Irvine, Lipkin published several papers throughout the decade dissecting and interpreting bornavirus.[19] Once it was apparent the viral infections could selectively alter behavior and steady state brain levels of neurotransmitter mRNAs, the next step was to look for infectious agents which could be used as probes to map anatomic and functional domains in the central nervous system (CNS).[20]

By the mid-1990s, it was asserted that "Borna disease is a neurotropic negative-strand RNA virus that infects a wide range of vertebrate hosts," causing "an immune-mediated syndrome resulting in disturbances in movement and behavior."[21] This led to several groups across the globe working to determine if there was a link between Borna disease virus (BDV) or a related agent and human neuropsychiatric disease.[22] The group was formally called Microbiology and Immunology of Neuropsychiatric Disorders (MIND) and the multicenter, multi-national group focused on using standardized methods for clinical diagnosis and blinded laboratory assessment of BDV infection.[23] After nearly two decades of inquiry, the first blinded case-controlled study of the link between BDV and psychiatric illness[24] was completed by the researchers at Columbia University's Center for Infection and Immunity in a joint effort that concluded there is no association between the two. Lipkin noted that "it was concern over the potential role of BDV in mental illness and the inability to identify it using classical techniques that led us to develop molecular methods for pathogen discovery. Ultimately these new techniques enabled us to refute a role for BDV in human disease. But the fact remains that we gained strategies for the discovery of hundreds of other pathogens that have important implications for medicine, agriculture, and environmental health."[25]

West Nile Virus (in New York)

In 1999, West Nile virus was reported in two patients in Flushing Hospital Medical Center in Queens, New York. Lipkin led the team identifying West Nile virus in brain tissue of encephalitis victims in New York State[14] It was determined potential routes for the spread of West Nile virus throughout New York (and the Eastern United States) originated from predominantly mosquitoes, but also possible from infected birds or human beings. There is a high likelihood the two international airports nearby the initial reported cases were also the initial points of entry into the United States.[26] During the five years after the first reported case, Lipkin worked on a study with the National Institutes of Health (NIH) and the Wadsworth Center at the New York State Department of Health (NYSDOH) to determine how a vaccine could be developed. While they had some success with the immunization of mice with prME-LPs,[27] as of 2018, there is still no human vaccine for WNV.[28]

SARS-CoV

Sars-corona

Chinese scientists first discovered the severe acute respiratory syndrome (SARS) coronavirus in February 2003, but due to initial misinterpretation of the data, the information of the correct agent associated with SARS was suppressed and the outbreak investigation had a delayed start. Advanced hospital facilities were at the greatest risk as they were most susceptible to virus transmission, so it was the "classical gumshoe epidemiology" of "contact tracing and isolation" that brought swift action against the epidemic.[29] Lipkin was requested to assist with the investigation by Chen Zhou, vice president of the Chinese Academy of Sciences and Xu Guanhua, minister of the Ministry of Science and Technology in China to "assess the state of the epidemic, identify the gaps in science, and develop a strategy for containing the virus and reducing morbidity and mortality."[30] This brought the development of Real-time polymerase chain reaction (qPCR) technology, which essentially allowed for the detection of infection at earlier time points as the process, in this instance, targets the N gene sequence and amplify the analysis in a closed system. This markedly reduces the risk of contamination during processing.[31] Test kits were developed with this PCR-based assay analysis[32] and 10,000 were hand-delivered to Beijing during the height of the outbreak by Lipkin, whereupon he trained local clinical microbiologists on the proper usage. He became ill upon his return to the U.S. and was quarantined.[33]

Lipkin was asked to join the Defense Science Board Task Force on SARS Quarantine Guidance during the height of the SARS outbreak between 2003 and 2004, to advise the U.S. Department of Defense on steps to domestically manage the epidemic. As part of the EcoHealth Alliance, Lipkin's center worked in conjunction with an NIH/NIAID grant[34] assessing bats as the reservoir for the SARS virus. 47 publications resulted from this grant, which also included assessment on Nipah, Hendra, Ebola, and Marburg viruses. This proved to be significant research on the overall study of viral reservoirs as it was determined that bats carry coronaviruses and either directly infect humans with an exchange of bodily fluid (such as a bite) or indirectly by infecting an intermediate host, such as swine.[35] Lipkin addressed a health forum in Guangzhou in January 2004 where China Daily reported him as saying: "SARS virus is probably rooted and spread by rats."[36]

In 2016, the Chinese government awarded him the International Science and Technology Cooperation Award, the nation's top science honor for foreign scientists,[37] and in January 2020, it awarded him a medal marking the People's Republic of China's 70th Anniversary, both awards for his work during the 2002–2004 SARS outbreak and in strengthening China's public health system.[38]

MERS-CoV

Middle East respiratory syndrome (MERS) was first reported in Saudi Arabia during June 2012 when a local man was initially diagnosed with acute pneumonia and later died of kidney failure. The early reports of the disease were similar to SARS as the symptoms are similar, but it was quickly determined these cases were caused by a new strain called MERS coronavirus (MERS-CoV). Given Lipkin's expertise with the SARS outbreak in China nearly ten years prior, the Saudi Arabian Ministry of Health granted Lipkin and his lab local access to animal samples related to the initial reported cases.[39] With the rare opportunity, Lipkin's team created a mobile lab able to fit in six pieces of personal luggage and was transported from New York to Saudi Arabia via commercial flight to complete the analysis of samples.[40]

It seemed unlikely that bats were directly infecting humans, as the direct physical interaction between the two is limited at best.[39] A study was completed in more local proximity, examining the diverse bat populations in southeastern Mexico and determining how diverse the viruses they carry could be.[41] However, it became apparent that dromedary camels were the intermediary in the transmission between bats and humans, since camel milk and meat are dietary staples in the Saudi Arabian region.[42] The instances of human-to-human transmission appeared to be isolated to case-patients and anyone in close direct contact with them, as opposed to a broad open-air transmission.[43] By 2017, it was determined that bats are most likely the evolutionary original source for MERS-CoV along with several other coronaviruses, though not all of those types of zoonotic viruses are direct threats to humans like MERS-CoV[44] and "[c]ollectively, these examples demonstrate that the MERS-related coronaviruses are high associated with bats and are geographically widespread."[45]

Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)

Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) is a chronic condition characterized by extreme fatigue after exertion that is not relieved by rest and includes other symptoms, such as muscle and joint pain and cognitive dysfunction. In September 2017, the NIH awarded a $9.6 million grant to Columbia University for the "CfS for ME/CFS" intended for the pursuit of basic research and the development of tools to help both physicians and patients effectively monitor the course of the illness.[46] This collaboration effort led by Lipkin includes other institutions, such as the Bateman Horne Center (Lucinda Bateman), Harvard University (Anthony L. Komaroff), Stanford University (Kegan Moneghetti), Sierra Internal Medicine (Daniel Peterson), University of California, Davis (Oliver Fiehn), and Albert Einstein College of Medicine (John Greally), along with private clinicians in New York City.[47]

The team of researchers and clinicians initially collaborated to de-link xenotropic murine leukemia virus-related virus (XMRV) to ME/CFS after the NIH requested research into the conflicting reports between XMRV and ME/CFS. The group "consolidated its vision with support from the Hutchins Family Foundation Chronic Fatigue Initiative (CFI) and a crowd-funding organization, The Microbe Discovery Project, to explore the role of infection and immunity in disease and identify biomarkers for diagnosis through functional genomic, proteomic, and metabolomic discovery."[48] The project will collect a large clinical database and sample repository representing oral, fecal, and blood samples from well-characterized ME/CFS subjects and frequency-matched controls collected nationwide over a period of several years. Additionally, researchers are working with ME/CFS community and advocacy groups as the project progresses.[49]

Acute flaccid myelitis (AFM)

Acute flaccid myelitis (AFM) is a serious condition of the spinal cord with symptoms including rapid onset of arm or leg weakness, decreased reflexes, difficulty moving the eyes, speaking, or swallowing may also occur. Occasionally numbness or pain may be present and complications can include trouble breathing. In August 2019, Lipkin and Dr. Nischay Mishra published a collaborative study with the CDC in analyzing serological data for serum and cerebrospinal fluid (CSF) samples of AFM patients.[50] The Lipkin team utilized high-density peptide arrays (also known as Serochips) to identify antibodies to EV-D68 in those samples. The technology was featured on the Dr. Oz Show in mid-September, illustrating how the enterovirus affects the CSF and the actual Serochip used to do the analysis.[51][52] In October, the University of California, San Francisco published a separate collaborative study with the CDC that confirmed the presence of antibodies to enterovirus in AFM patient CSF samples using phage display (VirScan).[53] "It's always good to see reproducibility. It gives more confidence in the findings for sure," commented Lipkin in an October 2019 CNN article. "This gives us more support of what we found."[54][55][56]

SARS-CoV-2

According to the Financial Times, Lipkin first learnt of COVID-19 from contacts in China, where it first emerged, in mid-December, and in early January he repeatedly urged his Chinese counterparts to publish the virus's genetic sequencing to aid research, and visited senior Chinese officials, including Premier Li Keqiang,[57] to discuss the disease.[58]

On January 29, 2020, Lipkin flew into Guangzhou, China to learn about the outbreak of SARS-CoV-2.[59] Lipkin met with the epidemiologist and pulmonologist Zhong Nanshan,[60] the lead advisor to the Chinese government during the outbreak.[61] Lipkin also worked with the China CDC to access blood samples from across the country for further study into the origin and spread of the virus.[62] Lipkin did not travel to Wuhan, the epicenter of the outbreak, due to fears that this would prevent him from returning to the United States.[63] On returning to the United States, Lipkin self-quarantined for 14 days.[64]Lipkin later contracted SARS-CoV-2 in New York City,[65] refusing to go to hospital and treating himself with hydroxychloroquine at home.[58]

Lipkin criticized what he considered a xenophobic response that blames China for the virus, specifically the words of US president Donald Trump calling it the "China virus" and his decision to suspend funding to the World Health Organization for being "China-centric", calling for "global problems" to be addressed by "global solutions". He said that a series of government missteps helped spread the virus around the world very rapidly, and criticized the US and UK's responses, calling them slow, and blamed insufficient and inadequate testing and tracing for rising fatality numbers. In the US, he singled out as an issue what he saw as an inconsistency in advice, including by president Trump, and highlighted the need for national leadership, while acknowledging states had the ability to make decisions in certain areas. He praised his NIAID superior Anthony Fauci for his integrity. He also warned about the danger of future emergence of new deadly viruses.[58]

After his trip to China, Lipkin maintained links with Lu Jiahai, his research partner at Sun Yat-sen University in Guangzhou, and Zhong Nanshan, to try to establish the origins of the virus.[60] Their efforts, aimed at finding out whether the virus emerged in other parts of China and circulated before it was first discovered in Wuhan in December, include antibody tests of nationwide blood bank samples from pneumonia patients which predate the pandemic, which led to a collaboration with the Chinese Centers for Disease Control and Prevention.[57] According to Lipkin, this research began in early February. The international research team also began studying blood samples from different wild animals which it deemed potential origins of the virus, in order to understand animal-to-human transmission.[57]

Lipkin thinks the virus could have originated in the wild animal trade and undergone “repeated jumps” from animal to human in the weeks before the first cases were logged, such a stream of events having recent precedents in the emergence of MERS-CoV, which jumped from dromedary camels to humans in 2012, and SARS-CoV, from civet cats to humans in 2003.[58]

Lipkin co-authored a paper on The proximal origin of SARS-CoV-2, which was published in Nature Medicine in March 2020.[66]

Views on gain-of-function research

Gain-of-function (GoF) experiments aim to increase the virulence and/or transmissibility of pathogens, in order to better understand them and inform public health preparedness efforts.[67]  This includes targeted genetic modification (to create hybrid viruses), the serial passaging of a virus through a host animal (to generate adaptive mutations), and targeted mutagenesis (to introduce mutations).[68] Lipkin is a listed “supporter” of GoF advocate group, Scientists for Science,[69] which was co-founded by Columbia colleague Vincent Racaniello.[70] The US National Institutes of Health placed a moratorium on GoF research in October 2014, and lifted the moratorium in December 2017, after the implementation of stricter controls.[71][72]

Lipkin, while not endorsing every GoF experiment, has said that "[t]here clearly are going to be instances where gain-of-function research is necessary and appropriate." In the example of Ebola, which is incapable of airborne transfer, Lipkin believes that "researchers could make a case for the need to determine how the virus could evolve in nature by engineering a more dangerous version in the lab." Lipkin believes that there should be guidelines in place to govern GoF experiments.[73] Lipkin has called for the World Health Organization to establish strict biocontainment criteria that can be applied globally - including in the developing world - to GoF research.[74]

Selected awards and honors

ME-Pedia : (Feb 2021) - Ian Lipkin

https://me-pedia.org/wiki/Ian_Lipkin 

Walter Ian Lipkin, or W. Ian Lipkin, MD, is the John Snow Professor of Epidemiology at the Mailman School of Public Health at Columbia University and Professor of Neurology and Pathology at the College of Physicians and Surgeons at Columbia University. Lipkin is also Director of the Center for Infection and Immunity, an academic laboratory for microbe hunting in acute and chronic diseases.[1] Dr. Lipkin traveled to China in 2003 to investigate the SARS outbreak of 2003, and to Saudi Arabia during the MERS outbreak, both coronaviruses.[1] He traveled again to China in 2020 during the COVID-19 outbreak and contracted the disease himself. [2]

Talk and interviews

Discover - Health & Medicine By Grant Delin

"When Ian Lipkin chose a career in infectious diseases, he envisioned hunting for pathogens in daring treks around the world. Though disappointed to learn that modern-day virus hunters work largely from the lab, he still wound up a pioneer."[3]

Notable studies

XMRV

The scientist who put the nail in XMRV's coffin

[Note - XMRV initially proposed by Dr. Judy Anne Mikovits (born 1958) and Dr. Francis William Ruscetti (born 1943) ]

Nature By Ewen Callaway

"A study published today has found no evidence to support research linking the retroviruses XMRV2 and pMLV3 to chronic fatigue syndrome (CFS). The US$2.3-million study, funded by the US National Institutes of Health (NIH), comes three years after a link between XMRV and CFS was first reported in Science."[5][12]

Open letters and advocacy

Chilli ME Challenge

Open letters

Online presence

Learn more

Simmaron Research By Cort Johnson

"Ian Lipkin flew to Lake Tahoe this December to fund raise for work he’s doing with the Simmaron Research Foundation. In a talk covering his virus hunting career, the threat of pathogens to humanity, and his work with chronic fatigue syndrome (ME/CFS), he dropped a bombshell: he stated that he believes it’s possible to solve ME/CFS in three to five years."[14]

Pro-Health By Cort Johnson

"Ian Lipkin gets a big grant and so did some others. (Could the IOM and P2P reports have prompted this little flurry of interest?)"[15]

The Microbe Discovery Project

"Researchers at the Center for Infection and Immunity at Columbia University’s Mailman School of Public Health identified distinct immune changes in patients diagnosed with chronic fatigue syndrome, known medically as myalgic encephalomyelitis (ME/CFS) or Systemic Exertion Intolerance Disease."[16]

See also

Reports that may have led to grants[edit | edit source]

1999 (Sep 26) - NYTimes : "Exotic Virus Is Identified In 3 Deaths"

By Andrew Jacobs   /  Sept. 26, 1999  /   [HN01I9][GDrive]

The mosquito-borne illness that has killed three people in New York City is not St. Louis encephalitis, but a similar disease that has never before been found in the Western Hemisphere, health officials said early this morning.

Scientists in two states who have been examining brain tissue from the people killed by the outbreak of encephalitis confirmed that it was caused either by West Nile virus, from Africa, or Kunjin virus, a variant that is found only in Australia.

Since last month, 14 people in New York City and Westchester County have been diagnosed with encephalitis, although it was unclear whether the two strains identified today are responsible for all the cases.

An official with the Centers for Disease Control and Prevention in Atlanta, and a researcher at the University of California at Irvine said this morning that the closely related strains had been positively identified in the brain matter of New York City residents killed by encephalitis. Until now, neither strain had been found in birds or people in this hemisphere.

[Dr. Duane J. Gubler (born 1939)], director of the C.D.C.'s division of vector-borne infectious diseases, said that the agency's lab found the West Nile virus in the brain of one of the victims early last week. ''It was a total surprise to us,'' he said. ''There was no reason to suspect that we'd find West Nile here.''

[Dr. Walter Ian Lipkin (born 1952)], the director of the Emerging Diseases Laboratory at the University of California at Irvine, said his colleagues had identified the virus in the brains of three victims from Queens that had been sent to his lab last week. ''It's very odd that they've been found here,'' he said. ''On the other hand, viruses evolve and they have the capacity to adapt themselves.'' Dr. Lipkin emphasized that the genetic difference between West Nile virus and Kunjin virus is so slight that the two are practically the same strain.

Until yesterday, New York health officials said they had found the West Nile virus only in birds that had died in and around the Bronx Zoo. But this morning, after the C.D.C confirmed the discovery of the virus in humans, a state official acknowledged that officials had known about the findings of [Dr. Walter Ian Lipkin (born 1952)] and Dr. Gubler for several days, but wanted to conduct more tests.

John Signor, a State Health Department spokesman, said the ageny was planning to release the information tomorrow after more testing confirmed the earlier findings. ''The identification of a virus is a complex process,'' he said. ''We felt more testing needed to be done.''

Despite the discovery that the encephalitis outbreak had been caused by a different virus, officials said that the public health measures undertaken to date would not change: the spraying of mosquitos and warnings to reduce exposure to the insects remains. Mr. Signor said that the treatment for those already infected with the disease would remain the same.

The Federal Centers for Disease Control and Prevention said Friday night that its scientists had identified a West Nile-like virus in four birds from New York that they had tested in their laboratory in Fort Collins, Colo.

The birds included two flamingos and an Asian pheasant from the Bronx Zoo, and a crow reported to be from Scarsdale, said Kristine Smith, a spokeswoman for the New York State Health Department.

Yesterday, city health officials continued collecting dead birds, which they had started to do on Friday. Special telephone lines and asked residents to call in sightings of dead birds. By 4 P.M. yesterday, the City Health Department had received two dozen reports of dead birds in all five boroughs, and sent out staff members from its pest control division to retrieve specimens, said a spokeswoman, Sandra Mullen.

''The birds will be kept on dry ice and brought to our Bureau of Laboratories,'' she said, adding that most of the dead birds reported were crows, which have been dying in large numbers since the beginning of the outbreak. Health officials in Suffolk County collected five dead crows on Friday, and sent them for analysis to the State Department of Environmental Conservation yesterday, said the director of public health, Mahfouz Zaki.

And after receiving reports at 5:30 P.M. on Friday that earlier samples from dead crows tested positive for an encephalitis-like disease, they sprayed South Huntington and Huntington Station with pesticides.

In Manhattan, a team from the Parks Department swept through Central Park on Friday night searching for dead birds but found none, said Parks Commissioner Henry J. Stern. He said that more teams would be dispatched, but that all park staff members had been notified and were on the lookout.

News that the infection was either West Nile virus or an Australian variant has deepened an epidemiological mystery that began in July with the deaths of numerous crows around the Bronx Zoo.

A pathologist at the zoo, [Dr. Tracey S. McNamara (born 1954)], first noticed that large numbers of crows were dying, reaching 40 by August. Then, birds at the zoo, including a guanay cormorant, three Chilean flamingos, a pheasant and a bald eagle, died.

Though the symptoms of both diseases are similar, and the steps to combat them are the same, the mosquitoes that carry them can differ, health officials said.

Ms. Smith of the State Health Department said the mosquitoes that carry St. Louis encephalitis and West Nile viruses, the Culex pipiens, are generally active from dusk to dawn. But another type of mosquito known to carry the West Nile virus, the Aedes vexans, is also active during the day, she said.

The symptoms of both illnesses are usually mild, but in some cases can cause neurological disorders and even death.

2002 (Dec 27) - NYTimes : "THREATS AND RESPONSES: LABORATORIES; After 9/11, Universities Are Destroying Biological Agents"

By Diana Jean Schemo  (NOTE : Author was wife of Dr. Roger Gerrard Breeze (born 1946) , director of Plum Island Animal Disease Center

( Dec. 17, 2002 )  /  [HN01QN][GDrive

As federal officials search for more powerful tools to investigate biological terrorism, universities across the country are destroying collections of laboratory agents crucial for understanding how biological weapons work and tracing their sources.

New federal laws require only that such biological materials be registered, but many universities are pressing researchers to clean out their freezers and destroy materials they are not currently working on.

While there is no official count of how many biological specimens have been destroyed, concern that laboratories have gone overboard prompted the White House to ask institutions, through the American Society of Microbiologists, to reconsider their haste in doing away with specimens that could prove ''difficult or impossible to replace,'' said [Rachel Elizabeth Levinson (born 1952)], of the White House Office on Science and Technology Policy.

''Obviously, these materials are valuable as research tools, and in terms of developing countermeasures should these agents be used as weapons, or if there's an unintentional natural outbreak,'' Dr. Levinson said. ''They're valuable research tools, and we would not like to see them destroyed.''

Under laws enacted since last year's anthrax mailings, which killed five people, research institutions, clinical and diagnostic laboratories must inventory and register the presence of 61 select agents that could be used to make biological weapons, including ebola, herpes B, smallpox and a variety of toxins. The materials must be kept under lock and key, with access to them restricted to people cleared by government background checks. Scientists must also demonstrate a ''bona fide research purpose'' for working with a given material.

The problem appears to lie in conflicting messages from Washington and in overly zealous compliance with the new laws on select agents, said Ronald Atlas, president of the American Society of Microbiologists. The prosecution of Tomas Foral, a University of Connecticut scientist arrested after he pocketed an anthrax specimen in cleaning out a laboratory freezer, caused many researchers to think twice, Dr. Atlas recalled.

''Many say Tomas Foral at Connecticut was a clear message from the Justice Department to the scientific community: If you can't justify having it, clear it out,'' Dr. Atlas said. ''When you have these criminal penalties hanging over your head, you ask, 'Why should I be the one to bear that legal risk?' ''

The most spectacular example of the wholesale destruction of specimens came last year, when Iowa State University at Ames destroyed its entire collection of anthrax specimens. The university acted after an Ames strain was tied to the fatal anthrax letters, and with the criminal investigation in full swing.

John McCarroll, a spokesman for Iowa State, said copies of the anthrax strains that were destroyed existed elsewhere, but other scientists disagree. They maintain that recent advances in genetic engineering have shown that families of strains that appeared the same were, on closer inspection, quite different. Mr. McCarroll said that more recently, Iowa State had asked researchers to destroy select agents that they were not ''currently working on.''

Few universities have gone so far as to order the elimination of specimens outright. Rather, in conducting inventories of biological agents, most have urged researchers to consider seriously, and justify, their need for sensitive materials. Some describe the procedure as good ''housekeeping,'' saying as a matter of principle, dangerous materials not immediately needed should be discarded.

At the University of Pennsylvania, the new laws on select agents has prompted not just housekeeping, but also soul searching, said Matthew Finucane, director of environmental health and radiation safety.

''If they don't have a mission for the material, people are disposing of it,'' Mr. Finucane said.

At Duke University, the discovery of a select agent was grounds for an ''internal audit,'' said Wayne Thomann, the university's director of occupational and environmental health. If they were ''historical stocks'' and researchers could not come up with a current need for the agents, Mr. Thomann said, ''we went through a process of controlled destruction.''

''I can't give any exact numbers,'' he said, ''but it was a fair number that decided there wasn't a real research benefit in maintaining this stuff.''

Harvard University did not suggest researchers destroy agents, but R. John Collier, a biochemist who works on anthrax there, said he had taken it upon himself last year to destroy the only strain he had on hand ''to avoid attracting terrorists and more of the press than I wanted.''

But policies that make sense in other contexts, like discarding old samples, are madness when it comes to scientific research, said Steven Block, a physics and biology professor at Stanford University.

Dr. Block said past strains of anthrax were essential for understanding how quickly an organism altered itself in nature.

''So much you can learn by knowing the evolutionary biology of bacteria,'' he said, ''but you can't research that evolutionary biology if you can't look at the past versions of it. It's the connectedness of all this that's so important.''

Dr. W. Ian Lipkin, director of the Center for Immunopathogenesis and Infectious Diseases at Columbia University, said, ''What you're discarding is access to materials and intellectual property you may need downstream.''

Dr. Lipkin is investigating what causes diseases like autism and cancer, and relies on comparing genetic sequences in as many specimens as possible. ''This will definitely interfere with our work,'' he said.

He noted that in the 1990's accusations arose that American scientists had introduced the AIDS virus, H.I.V., to Africa through earlier research infecting monkeys with polio. The scientific community was only able to disprove the theory conclusively by turning over the 40-year-old cells for independent scrutiny.

Dr. [Rachel Elizabeth Levinson (born 1952)], at the White House, said that if institutions really felt intimidated by the new rules, they should transfer the materials to a laboratory willing to accept them.

Others have said the administration should have created such a repository to accept materials that laboratories felt compelled to discard. And many fear that it may take time to repair the harm that is being done.

''I would hope that we could recover from any deleterious effect in the long run,'' said Barbara Johnson, president of the American Society of Biological Safety. ''But if you had a unique sample that no one had replicates of, that sample's gone.''

2003 (May 07)

https://www.newspapers.com/image/716158790/?terms=%22ian%20lipkin%22&match=1

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Also mentioned (on same page) - Lawrence Oglethorpe Gostin (born 1949)

2003 (Oct 31) - NYTimes : "On the Front Lines of the Virus War; Inside a Columbia Lab, Infectious Diseases Are All the Rage"

RICHARD PÉREZ-PEÑA  /  Oct. 31, 2003  Source : [HN01QY][GDrive

ALSO Mentioned : [Dr. John S. MacKenzie (born 1943(est.))

In a drab high-rise in Washington Heights, behind locked doors to which only four people have electronic keys, a scientist in a head-to-toe body suit transferred the SARS virus from a test tube to a dish, with a calm born of day-to-day familiarity.

A year ago, the Greene Laboratory of Columbia University's Mailman School of Public Health did not exist; today, the stuff of nightmares and headlines resides there -- SARS, West Nile virus, Bornavirus, anthrax. With remarkable speed, the lab has helped turn Mailman into a major player in research on the infectious disease outbreaks and bioterror threats that have been the focus of the world's attention in the last few years.

The school is also doing front-line work on chronic diseases like juvenile diabetes. If Mailman still cannot match the public health schools at Johns Hopkins or Harvard for resources and technical prowess, it is at least no longer playing in a different league.

''They've always been important, but their standing has been increasing and they've acquired enormous talent and resources,'' said [Dr. John S. MacKenzie (born 1943(est.))], an Australian microbiologist and scientific consultant to the World Health Organization, who led the first Western team to investigate SARS in China. ''They've become a leader in the field of early disease detection and rapid diagnosis.''

The elevation of the Mailman School's profile stems in part from a series of world events that have put far more emphasis on biological threats, natural or manufactured.

But it also results from years of effort by Mailman's dean, Dr. Allan Rosenfield, to increase the school's resources and change its focus. He said its budget has grown to $140 million from about $10 million when he took over in the mid-1980's.

Dr. Rosenfield decided to put more emphasis on high-level research, bioterrorism and disease outbreaks. ''The anthrax attacks were a wake-up call,'' he said. ''We stressed the laboratory systems in this country -- several cities, a few states, even the C.D.C. -- beyond their capabilities. The ability to respond to these crises was clearly wanting.''

This spring, scientists at the new Jerome L. and Dawn Greene Infectious Disease Laboratory, headed by Dr. Ian Lipkin, developed a test for SARS, and Dr. Lipkin flew to China to donate 10,000 SARS test kits. He quickly established that test as one of a handful that are widely used for the virus, and himself as an adviser to the Chinese government.

Scientists at Mailman are studying, among other things, the West Nile genome to learn why it spreads faster than related viruses, evidence that SARS can hide in people's intestines without making them ill, whether an enterovirus might trigger juvenile diabetes, possible links between Bornavirus and psychiatric disorders, and the extent of the nation's preparedness for a terrorist attack.

In April, the Mailman school created a National Center for Disaster Preparedness and hired Dr. Irwin Redlener, president of the Children's Health Fund and a prominent voice on bioterrorism and other issues, as its first director.

Dr. Rosenfield lured Dr. Lipkin from the University of California at Irvine, making him director of the Greene laboratory, and Dr. Lipkin, in turn, brought much of his research team with him and recruited other people to the lab, which has about 30 researchers. Dr. Lipkin was the first to identify a 1999 outbreak of encephalitis as the first appearance of West Nile virus in North America, and he helped develop tests for West Nile.

Dr. Lipkin said he was very reluctant to leave California, ''but I recognized that the resources here would allow me to do work I couldn't do anywhere else.''

A $6 million gift from the family of Jerome L. Greene, a philanthropist who died in 1999, created the laboratory and endowed the director's chair. The lab has an area designated as biosafety Level 3, or B.S.L. 3, where researchers can work with dangerous contagions that were off limits to Columbia before.

Anyone entering the B.S.L. 3 lab must wear a body suit, mask and gloves, and pass through an antechamber akin to an airlock; some also wear hoods attached to whirring battery packs, pumping filtered air to keep germs away from their mouth, nose and eyes. Ultraviolet lights kill stray bacteria. Anything taken out must either go through a high-pressure autoclave to be sterilized at 270 degrees Fahrenheit, or be swabbed down with germicide.

Air pressure inside the lab is kept low so that air, and microbes, can only flow in without escaping. It has a sophisticated air filtration system and backup system, and its own emergency power generator. Security in the building is tight; Dr. Rosenfield said not even he has access to the area that includes the B.S.L. 3 lab.

Not many universities have comparable labs. Even some state health departments do not.

Across the metropolitan region, universities, government agencies and companies banded together this year to form the Northeast Biodefense Center, headed by Columbia, the New York State Department of Health and the Academic Medicine Development Corporation. Dr. Lipkin is its director. Last month, the federal Department of Health and Human Services designated the center as one of eight regional biodefense centers, with $9 million a year in aid, to work on threats like smallpox, Ebola virus, plague and botulinum toxin.

This month, the Mailman School became one of about 120 institutions worldwide that make up the W.H.O.'s Global Outbreak Alert and Response Network, helping the world group investigate and contain eruptions of contagious disease. Ten other network members are based, at least partly, in the United States, including government agencies like the Centers for Disease Control and Prevention, Harvard, Johns Hopkins, and international groups like the International Federation of Red Cross and Red Crescent Societies, and the International Rescue Committee.

Mailman is ''doing cutting-edge stuff that's new for them, and it's great to have this resource in the city to call on when things hit,'' said Dr. Thomas R. Frieden, New York City's health commissioner. In an enterovirus outbreak this month on Staten Island, Dr. Frieden said, the Greene lab volunteered to help the city -- which has its own B.S.L. 3 lab -- try to identify the microbe.

Such work is not the traditional role of schools of public health. With some notable exceptions, they have tended to focus on long-term health threats, data analysis and shoe-leather epidemiology, leaving the response to outbreaks and sophisticated microbiology to government agencies, medical schools and hospitals.

But Dr. Lipkin said the lines between the two roles have been blurred, as scientists learn of links between germs and chronic diseases like schizophrenia or diabetes, as they find that formerly harmless germs can suddenly become virulent, and as a more crowded, connected world makes it easier for diseases to jump species to species and continent to continent.

''Anything that we learn about outbreaks of acute disease is going to help us in chronic diseases, as well,'' he said. ''There is no virus I know of that doesn't ultimately cause a problem. They all find their niche.''

2010 (May) - Dr. Ian Lipkin talks about the promise of personalized medicine.

https://www.youtube.com/watch?v=Q2ao0HBHPAA

282 viewsMay 25, 2010

channel Columbia Public Health

https://www.publichealth.columbia.edu/public-health-now/news/prof-ian-lipkin-brings-science-hollywoods-contagion 

2011-08-28-publichealth-columbia-ed-ian-lipkin-science-to-hollywood.pdf

Prof. Ian Lipkin Brings Science to Hollywood's Contagion

INFECTIOUS DISEASE Aug. 27 2011

INTERNATIONALLY-RENOWNED “MICROBE HUNTER” WORKED CLOSELY WITH FILMMAKERS TO ENSURE ACCURACY OF STAR-STUDDED SODERBERGH MOVIE ABOUT PANDEMIC.

Oscar-winning director Steven Soderbergh’s new movie Contagion imagines a deadly virus outbreak that quickly sweeps around the world.  The gripping story is fiction, but the global pandemic it portrays is entirely realistic. Soderbergh and Contagion screenwriter Scott Z. Burns were committed to the truth of the film right from the start and sought out Dr. W. Ian Lipkin, one of the world’s foremost microbe hunters and a professor at Columbia University’s Mailman School of Public Health, to tap his scientific expertise as they developed the concept.

It wasn’t the first time Hollywood had knocked on Dr. Lipkin’s door, but it was the first time he said “yes.”  Lipkin was persuaded that “this was an effort to accurately represent the science and to make a movie that would entertain as well as educate.” Now that it is opening in theaters, he hopes that Contagion will help people to understand the urgent public health challenges that we face in the 21st century due to increasing international trade and travel, urbanization, loss of wildlife habitats, and inadequate investment in infrastructure for surveillance  and vaccine production and distribution.

After early conversations about the movie concept, Lipkin signed on as technical adviser to Contagion in March, 2009 and played an active role throughout production.  He suggested the movie’s plot might be triggered by an outbreak of a virus similar to Nipah, a deadly virus that has, on occasion, migrated from animals to people.

At Columbia, Dr. Lipkin is the director of the Mailman School of Public Health’s renowned Center for Infection and Immunity, which does cutting-edge work in microbe detection and discovery. He has identified more than 400 new viruses and was the first to determine that West Nile virus was the cause of the 1999 encephalitis epidemic in New York City.

Some of the scenes in Contagion reflect Dr. Lipkin’s vivid memories of Beijing when he assisted the World Health Organization and the Chinese Health Ministry manage the SARS outbreak in 2003.  At risk on the frontlines of the epidemic, as public health professionals sometimes are, he became ill and was quarantined when he returned to the U.S.  On the movie set, Dr. Lipkin shared his experience in China with Matt Damon, offering the actor insight into what it feels like to be behind glass and cut off from loved ons. 

Dr. Lipkin also coached Contagion actors on the practices and process of scientific research. Kate Winslet and Jennifer Ehle visited the Center for Infection and Immunity to learn the mechanics of being a bench scientist, working with the lab’s equipment to do technical procedures. And Elliott Gould, who plays a research scientist named “Ian,” talked to Dr. Lipkin about the intellectual process of making a scientific breakthrough. Suggesting to the actor how to look through a microscope and reflect on what it reveals, “I told Elliott it’s important that you get this right, because you are playing me,” Dr. Lipkin recalls.

The laboratory at the Center for Infection and Immunity, where Dr. Lipkin and his team of 65 conduct their research, also has an invisible role in the movie. In pursuit of authenticity, Contagion’s production crew traveled to the lab to record centrifuges whirring, liquid nitrogen hissing, and even the squeaky noise of opening animal cage doors for the film’s soundtrack.

In addition to his work at Columbia, Dr. Lipkin co-chairs the National Biosurveillance Advisory Subcommittee (NBAS) of the Centers for Disease Control and Prevention, which was established in response to a Homeland Security Presidential Directive recognizing that infectious diseases are an increasing threat to the nation. From that perspective, Dr. Lipkin hopes that Contagion will be a wake-up call for the public that today’s fiction could easily become fact tomorrow.  He says, “Science is critical to address these challenges. We’ve been through this with SARS. We will be through it again.”

Link to NBAS Report at http://www.cdc.gov/about/pdf/advisory/nbasfinalreport_april2011.pdf​

https://www.youtube.com/watch?v=XFs1_y3Vp34 

Microbe Hunting in the 21st Century - W. Ian Lipkin, MD - University of Washington

1,458 views•Jul 15, 2014


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UW Video

Recent advances in nucleic acid diagnostic methods have revolutionized microbiology by facilitating rapid, sensitive microbial surveillance and differential diagnosis of infectious diseases. During his talk at the University of Washington, Dr. W. Ian Lipkin of the Center for Infection and Immunity, Mailman School of Public Health, Columbia University, shares how implementation of these methods may enable intervention when the prognosis is optimal for limiting replication, dissemination, transmission, morbidity and mortality.

2020 (Mar 24) - Epoch Times (covered in article on April 03) : "Top US Epidemiology Expert Infected With the CCP Virus One Month After He Helped China Defend the Origin of the Virus" by Yang Ning

Yang Ning  /   April 3, 2020 Updated: April 7, 2020  /  [HM003C][GDrive]    /   Also see :  Yang Lan (born 1968)  

Walter Ian Lipkin, professor of epidemiology at Columbia University, known as a “virus hunter,” revealed in an interview on Fox Business Network that he has tested positive for the CCP (Chinese Communist Party) virus on March 24.

Lipkin is the director of Columbia University’s Center for Infection and Immunity, and has earned the reputation of a “virus hunter” for his efficiency and innovative methods of identifying new viruses. In the past 30 years, he has been involved in the epidemic control of almost all major contagions in the world, including West Nile virus and SARS. In addition, he has discovered and identified more than 800 viruses causing human, wildlife or domestic animal diseases.

Lipkin’s friendship with the Chinese communist regime probably started in 2003 when he was invited to visit Beijing during the SARS outbreak. Working closely with a team in Beijing headed by then Vice President of the Chinese Academy of Sciences Chen Zhu, Lipkin and Chinese medical scientists developed a strategy to combat SARS. He also gifted 10,000 SARS test kits to China.

Subsequently, Lipkin assisted China in setting up disease research institutions such as Institut Pasteur of Shanghai (IPS) and Guangzhou Institute of Biomedicine and Health. In May 2013, he went to Beijing again and signed a contract with the Virology Institute of China’s Center for Disease Control, to build a collaboration lab for pathogen research. All investment for this project came from the Chinese authorities.

Chinese state media often praise Lipkin for having made “great contribution” to China in the past ten years. In 2015, he was among one of the seven foreign recipients of China’s International Science and Technology Cooperation Award.

Has Lipkin procured any personal gains from the over ten years of “contribution?” Although there is no clear evidence on that, his statement after the CCP virus outbreak is telling the world that he certainly has an intimate tie with the CCP.

Lipkin was in China from Jan. 28 to Feb. 4, and met with high-ranking officials as well as top medical experts, including China’s chief coronavirus consultant Zhong Nanshan. Nonetheless, he did not go to Wuhan, the epicenter of the CCP virus.

On Feb. 24, Lipkin accepted an interview by Yang Lan, a famous TV hostess in China, and made a key statement in support of the Chinese authorities with regard to the origin of the CCP virus.

“What my colleagues and I think happened was that this virus was existing in a bat, probably came into contact with an animal, perhaps in a wild animal market, perhaps an infected human,” he said.

“We don’t think there’s any evidence that this virus was created in the Wuhan Institute of Virology or released accidentally. We think it emerged in nature. It’s a natural problem. And we need to address it as a naturally occurring virus.”

Dr. Lyons-Weiler, the founder and CEO of the Institute for Pure and Applied Knowledge (IPAK), published an article on Jan. 31 stating that medical research found evidence that might suggest the CCP virus could come out from a laboratory-induced event.

He said that “the available evidence most strongly supports that the 2019-NCoV virus is a vaccine strain of coronavirus either accidentally released from a laboratory accident, perhaps a laboratory researcher becoming infected with the virus while conducting animal experiments, or the Chinese were performing clinical studies of a coronavirus vaccine in humans.”

During the interview with Yang on Feb. 24, Lipkin did not provide any scientific evidence or argument to refute Lyon-Weiler’s statement.

2021 (April 28) - Video - Rollup the sleeves

2021 (April 28) - "Roll Up Your Sleeves: W. Ian Lipkin" (image used as main profile for this page) HV00JKhttps://www.youtube.com/watch?v=2OyCi5UCTy4  / Apr 28, 2021  /  2021-04-28-youtube-ian-lipkin-img-1.jpg / https://drive.google.com/file/d/1hyuOb0XICt3qYSVeiKexcH1eEKraTL_2/view?usp=sharing 
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