Covers the background/mathematics of umbrella sampling. Also has a walkthrough of Hemanth's workflow.
Sonja went over how to make changes to the wordpress site.
Jackson went over how to use Job Arrays in SLURM.
Jackson covered the motivation for coarse-grained force fields and the algorithmic advantages of their techniques. Quick overview of united atom force fields, MARTINI, and a coarse grained model of PPOTMA.
Hemanth's walkthrough of forcefield parameterization in CHARMM for i-CoMSE.
An introduction to forcefields, system minimization, and equilibration
Covers the thermodynamic pathways of deprotonation, thermodynamic integration, and the calculation of deprotonation free energies.
Covers electron density transport using the OCTREE algorithm, showing some results.
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Leonardo covers the background of the separations project, and his results in large dataset analysis from the literature.