腸内細菌叢解析のいろは（Inoue 2019）：簡単な解説
Microbiota Analysis in R (Mim Dill-McFarland 2017)
nMDS:
stress value ... 高い場合（eg. >0.3）、次元圧縮が不十分なので3D（k=3）を検討する
isoMDS（MASS）
metaMDS（vegan）
ref. Microbiota Analysis in R (Mim Dill-McFarland 2017)
Making phylogenetic distance
@ARB:
/Tree/Build_tree_from_sequence_data/Distance_matrix_methods/Phylip Distance Matrix
→ save the file from text editor
Import distance matrix into R
phyloseq package
install: ref. rdrr.io
R %if(!requireNamespace("BiocManager")){ install.packages("BiocManager")}BiocManager::install("phyloseq")R % library(phyloseq)