Branch length
Mai, Uyen, Erfan Sayyari, and Siavash Mirarab. “Minimum Variance Rooting of Phylogenetic Trees and Implications for Species Tree Reconstruction.” Edited by Gabriel Moreno-Hagelsieb. PLOS ONE 12, no. 8 (August 11, 2017): e0182238. https://doi.org/10.1371/journal.pone.0182238.
For data, see https://uym2.github.io/MinVar-Rooting/
Mai, Uyen, and Siavash Mirarab. “TreeShrink: Fast and Accurate Detection of Outlier Long Branches in Collections of Phylogenetic Trees.” BMC Genomics 19, no. S5 (May 8, 2018): 272. https://doi.org/10.1186/s12864-018-4620-2.
For dasta, see https://uym2.github.io/TreeShrink/
Balaban, Metin, Niema Moshiri, Uyen Mai, Xingfan Jia, and Siavash Mirarab. “TreeCluster: Clustering Biological Sequences Using Phylogenetic Trees.” Edited by Serdar Bozdag. PLOS ONE 14, no. 8 (August 22, 2019): e0221068. https://doi.org/10.1371/journal.pone.0221068.
Uyen Mai, Siavash Mirarab, Log Transformation Improves Dating of Phylogenies, Molecular Biology and Evolution, msaa222, https://doi.org/10.1093/molbev/msaa222.