Camalaniugan National High School offers basic curriculum for Junior High School. Guided by the Essential Competency, Camalaniugan National High School promotes contextualize learning in areas such as Filipino, English, Mathematics, Science, Araling Panlipunan, Technology and Livelihood Education, Music, Arts, Physical Education, Health and Edukasyon sa Pagpapakatao.

Camalaniugan National High School offers special program in Science Technology and Engineering or commonly known as Science Class in the Junior High School. The said program offers advance subjects such as Algebra, Environmental Science, Computer Class, Research and others.