The design of soft materials is being revolutionized through the application of computational modeling and in-depth mechanism studies across multiple scales. By using computational tools combined with advanced algorithms and machine learning techniques, this approach provides insights into materials from molecular to macroscopic levels, predicting how they react under different conditions. This is particularly useful in developing new materials tailored for specific applications, such as cost-effective drugs or drug delivery vehicles in biomedical engineering, and flexible, biocompatible, biodegradable materials for electronics. The focus on molecular-level research is crucial, uncovering the fundamental behaviors for more innovative and efficient designs. This combination of modeling and investigation is leading to significant advancements in soft materials, offering new prospects in various scientific and industrial fields.
Review papers:
Zhai, C.*, Li, T.*, Shi, H.*, & Yeo, J.† (2020). Discovery and design of soft polymeric bio-inspired materials with multiscale simulations and artificial intelligence. Journal of Materials Chemistry B, 8(31), 6562-6587. https://doi.org/10.1039/D0TB00896F Featured in: Journal of Materials Chemistry B Recent Review Articles and Journal of Materials Chemistry B Emerging Investigators
Project: Silk-Ca2+-H2O interactions in silk/CaCl2-based soft ionic conductors
Yu, X.*, Hu, Y.*, Shi, H.*, Sun, Z., Li, J., Liu, H., ... Yeo, J.†, Lu, Q.†, & Guo, C.† (2022). Molecular Design and Preparation of Protein-Based Soft Ionic Conductors with Tunable Properties. ACS Applied Materials & Interfaces, 14(42), 48061-48071. https://doi.org/10.1021/acsami.2c09576
Project: Thermo- and ion-responsiveness of silk-elastin-like protein (SELP)
Shi, H., Ji, T., Zhai, C., Lu, J., Huang, W., & Yeo, J.† (2022). Thermo-and ion-responsive silk-elastin-like proteins and their multiscale mechanisms. Journal of Materials Chemistry B, 10(32), 6133-6142. https://doi.org/10.1039/D2TB01002J Featured in: Journal of Materials Chemistry B Hot Papers
Proteins are complex molecules that perform a vast array of functions within living organisms. The mechanics and dynamics of proteins involve studying how these structures move, change, and interact, crucial for understanding biological processes, while biochemistry delves into the chemical reactions that proteins undergo or facilitate, essential for sustaining life. Achieving an understanding of these aspects can dramatically improve the prevention and treatment of aging and human diseases. This involves an interdisciplinary approach that blends material science with biological research, emphasizing the advancement of multiscale, multi-physics computational methods and simulations. Such an approach enables the exploration of disease mechanisms from a fundamental scale and across structural and functional hierarchies associated with complex biological systems. Focusing on these structure-function relationships aids in understanding the various protein forms and their impact on disease development or suppression. This extensive study is key to uncovering the complex operations and interactions of proteins in biological systems. The insights gained are fundamental for creating new drugs and treatments, targeting diseases more effectively at a molecular level.
Shi, H. & Yeo, J.† (2024, in preparation). Investigating energy dissipation and inelastic response in collagen fibrils under cyclic loading: a molecular dynamics investigation.
Shi, H., Zhao, L., Zhai, C., & Yeo, J.† (2021). Specific osteogenesis imperfecta-related Gly substitutions in type I collagen induce distinct structural, mechanical, and dynamic characteristics. Chemical Communications, 57(91), 12183-12186. https://doi.org/10.1039/D1CC05277B Featured in: 2021 Emerging Investigators
Shi, H., Maupin, M., Fox, S.†, & Yeo, J.† (2024, in preparation). Antiviral effects and molecular mechanisms of different types of compounds against EV71.
Refractory metals, known for their high melting points, corrosion resistance, and exceptional thermal conductivity, face limitations with traditional BCC structure interatomic potentials. These limitations are evident in phonon dispersion curves, screw dislocation core structures, and point defect formation energies. ML interatomic potentials, designed to emulate DFT results, offer improved accuracy and efficiency in MD simulations but require extensive DFT data for parameterization. To address this, we introduce a physics-informed Generalized EAM (GEAM) potential. The primary advantages of the GEAM potential are: (a) its use of basis functions, providing flexibility for various atomic environments and easing free parameter optimization; (b) employing linear regression to reduce free parameters, allowing for effective training with smaller datasets compared to ML potentials; and (c) a nonlinear three-body term that adds higher-order interactions without excessively increasing coefficients.
Project: Physics-informed generalized embedded-atom method potentials for metals and alloys
Shi, H. & Samanta, A.† (2024, in preparation). Chemical segregation and strengthening mechanisms in the CrMoNbV high-entropy alloy by the generalized embedded atom method potential.
Shi, H.*, Wang, W.*, & Samanta, A.† (2024, in preparation). Systematic design and Fisher information theory analysis of physics-informed interatomic potentials.
Shi, H., Sharma, B., & Samanta, A.† (2024). Analysis of phase stability and chemical segregation in the Mo-V alloys using a generalized embedded atom method potential. Computational Materials Science, 233, 112732. https://doi.org/10.1016/j.commatsci.2023.112732