Publications & Patents

Peer-Reviewed Publications

Shee, C., Cox, B. D., Gu, F., Luengas, E. M., Joshi, M. C., Chiu, L. Y., ... & Rosenberg, S. M. "Engineered proteins detect spontaneous DNA breakage in human and bacterial cells." Elife 2013, 2, e01222.
Al Mamun, A. A. M., Lombardo, M. J., Shee, C., Lisewski, A. M., Gonzalez, C., Lin, D., ... & Rosenberg, S. M. Identity and function of a large gene network underlying mutagenic repair of DNA breaks. Science 2012, 338(6112), 1344-1348.
Wimberly, H., Shee, C., Thornton, P. C., Sivaramakrishnan, P., Rosenberg, S. M., & Hastings, P. J. R-loops and nicks initiate DNA breakage and genome instability in non-growing Escherichia coli. Nature communications 2013, 4(1), 2115.
Rosenberg, S. M., Shee, C., Frisch, R. L., & Hastings, P. J. Stress‐induced mutation via DNA breaks in Escherichia coli: a molecular mechanism with implications for evolution and medicine. Bioessays 2012, 34(10), 885-892.
Shee, C., Gibson, J. L., Darrow, M. C., Gonzalez, C., & Rosenberg, S. M. Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli. Proceedings of the National Academy of Sciences 2011, 108(33), 13659-13664.
Chaudhary, N. S., Shee, C., Islam, A., Ahmad, F., Yernool, D., Kumar, P., & Sharma, A. K. Purification and characterization of a trypsin inhibitor from Putranjiva roxburghii seeds. Phytochemistry 2008, 69(11), 2120-2126.
Shee, C., Gibson, J. L., & Rosenberg, S. M. Two mechanisms produce mutation hotspots at DNA breaks in Escherichia coli. Cell reports 2012, 2(4), 714-721.
Shee, C., & Sharma, A. K. Purification and characterization of a trypsin inhibitor from seeds of Murraya koenigii. Journal of enzyme inhibition and medicinal chemistry 2007, 22(1), 115-120.
Agrawal, H., Shee, C., & Sharma, A. K. Isolation of a 66 KDa protein with coagulation activity from seeds of Moringa oleifera. Research Journal of Agriculture and Biological Sciences 2007, 3(5), 418-421.
Shee, C., Ponder, R., Gibson, J. L., & Rosenberg, S. M. What limits the efficiency of double-strand break-dependent stress-induced mutation in Escherichia coli. Journal of molecular microbiology and biotechnology 2012, 21(1-2), 8-19.
Gahloth, D., Selvakumar, P., Shee, C., Kumar, P., & Sharma, A. K. Cloning, sequence analysis and crystal structure determination of a miraculin-like protein from Murraya koenigii. Archives of biochemistry and biophysics 2010, 494(1), 15-22.
Shee, C., Islam, A., Ahmad, F., & Sharma, A. K. Structure–function studies of Murraya koenigii trypsin inhibitor revealed a stable core beta sheet structure surrounded by α-helices with a possible role for α-helix in inhibitory function. International journal of biological macromolecules 2007, 41(4), 410-414.
Shee, C., & Sharma, A. K. Storage and affinity properties of Murraya koenigii trypsin inhibitor. Food chemistry 2008, 107(1), 312-319.
Maiti, S. K., Shee, C., & Ghose, M. K. Selection of plant species for the reclamation of mine-degraded land in the Indian context. Land Contamination and Reclamation 2007, 15(1), 55.
Shee, C., Agarwal, S., Gahloth, D., Meena, K., & Sharma, A. K. Identification of a peptide-like compound with antimicrobial and trypsin inhibitory activity from seeds of bottle gourd (Lagenaria siceraria). Journal of Plant Biochemistry and Biotechnology 2009, 18(1), 101-104.
Shee, C., Singh, T. P., Kumar, P., & Sharma, A. K. Crystallization and preliminary X-ray diffraction studies of Murraya koenigii trypsin inhibitor. Structural Biology and Crystallization Communications 2007, 63(4), 318-319.
Shee, C., Hastings, P. J., & Rosenberg, S. M. Mutagenesis associated with repair of DNA double-strand breaks under stress. In Stress-induced mutagenesis 2013 (pp. 21-39). New York, NY: Springer New York.
Kotlajich, M. V., Xia, J., Zhai, Y., Lin, H. Y., Bradley, C. C., Shen, X., Shee, C. & Rosenberg, S. M. Fluorescent fusions of the N protein of phage Mu label DNA damage in living cells. DNA repair 2018, 72, 86-92.
Patel, G. K., Shee, C., Gahloth, D., Selvakumar, P., & Sharma, A. K. Stability of Murraya koenigii miraculin-like protein in different physicochemical conditions. Medicinal Chemistry Research 2011, 20(9), 1542-1549.
Nourse, M. B., Engel, K., Anekal, S. G., Bailey, J. A., Bhatta, P., Bhave, D. P., Shee, C, & Holmes, E. A. Engineering of a miniaturized, robotic clinical laboratory. Bioengineering & Translational Medicine 2018, 3(1), 58-70.

Patents

Systems and methods for dual-end sequencing. Williams L, Shee C, Berghuis B, Staker B, Lakdawalla A, Publication # WO2024020410A1
Methods and systems for nucleic acid analysis, Sosa JM, Anthony J, Beckett N, Almogy G, Shee C, Lee PYF, Watanabe Y, Publication # 20220168745
Methods for nucleic acid analysis, Almogy G, Oberstrass F, Barad O, Shee C, Publication # 20220042072.
Nucleic acid clonal amplification and sequencing methods, systems, and kits. Lakdawalla, A, Oberstrass, F, Shee C, US publication # P20210230669.
Pathogen and antimicrobial resistance testing. Holmes E, Shee C, US publication No US20160281143 A1.
Hybrid multi-step nucleic acid amplification. Richardson A, Shee C, Majka J, U.S. Application No. 62/368,904; Docket number 3043.104.
Methods and compositions for detection of Zika viral infections. Shee C, Majka J, Araujo B, Chakravarty U.D, Sullivan-Bibee K, Sapida J, Salazar K, U.S. Patent No 10301689.

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