Journals

El Naqa I., Mismar J., and Zabalawi I., “Estimation of Coronary Artery Dimensions by Median Filtering Approach, IEICE Transactions on Fundamentals of Electronics, Communications and Computer Sciences, vol. E97-A, no. 7, pp. 1034-1043, July 1996.
El Naqa I., Yang Y., Wernick M., Galatsanos N., Nishikawa, R., “Support Vector Machine for Detection of Microcalcifications in Mammograms,” IEEE Transactions in Medical Imaging, vol. 12, no. 12, pp. 1552-1563, 2002.
Bradley J., Deasy J. O., Bentzen S., and El Naqa I., “Dosimetric correlates for acute esophagitis in patients treated with radiotherapy for lung carcinoma,” Int. J. Radiation Oncology Biol. Phys., Vol. 58, No. 4, pp. 1106–1113, 2004.
El Naqa I., Yang Y., Wernick M., Galatsanos N., Nishikawa, R., “A Similarity Learning Approach to Content Based Image Retrieval: Application to Digital Mammography,” IEEE Trans. on Medical Imaging, vol. 23, pp.1233-1244, 2004.
Mansur D. B., El Naqa I., Kong F., Klein E., Glazer H. S., Taylor ME, Zoberi I., Bradley J., and Perez C. A., “Localization of internal mammary lymph nodes by CT simulation: Implications for breast radiation therapy planning,” Short Communication in Radiotherapy and Oncology, Vol. 73, No. 3, pp. 355-357, 2004.
Blanco A., Chao K.C., El Naqa I., Franklin G.E., Zakarian K., Vicic M., and Deasy J.O., “Dose-volume modeling of salivary function in patients with head-and-neck cancer receiving radiotherapy ”. Int. J. Radiation Oncology Biol. Phys., Volume 62, Issue 4, pp. 1055-1069, July 2005.
Lu W., Parikh P., El Naqa I., Nystrom M, Hubenschmidt J., Wahab S., Mutic S., Sing A., Christensen G., Bradley J., and Low D.A., Quantification of the four-dimensional computed tomography process for lung cancer patients, Medical Physics, 32(4):890-901, Apr, 2004.
El Naqa I, Kawrakow I, Fippel M, Siebers J.V., Lindsay P.E, Wickerhauser M.V, Vicic M., Zakarian K., Kauffmann N., and Deasy J.O., “A Comparison of Monte Carlo dose calculation denoising techniques,” Physics in Medicine and Biology, Vol. 50, pp. 909–922, 2005.
Megri A., El Naqa I., Haghighat F., “A Learning Machine Approach For Predicting Thermal Comfort Indices,” International Journal of Ventilation, Vol. 3, no. 4, pp. 363-376, March, 2005.
Zheng J., El Naqa I., Rowold F.E., Pilgram T., Woodard P.K., Saffitz J.E., Tang D., “Quantitative Assessment of Vulnerability of Coronary Artery Plaques with MR Images and Biomechanics: A Pilot Study Ex Vivo,” Magnetic Resonance in Medicine, Vol. 54, no. 6, pp. 1360-1368, 2005.
Wei Lu, Daniel A. Low, Parag J. Parikh, Michelle M. Nystrom, Issam M. El Naqa, Sasha H. Wahab, Maureen Handoko, David Fooshee, and Jeffrey D. Bradley, “Comparison of spirometry and abdominal height as four-dimensional computed tomography metrics in lung,” Medical Physics, 32(7): 2351-2357, July, 2005.
Mansur D. B., Kong F., El Naqa I., Klein E., Taylor ME, Zoberi I., Bradley J., and Perez C. A., Klein E., CT localization of axillary lymph nodes in relation to the humeral head: Significance of arm position for radiation therapy planning as a short communication to Radiotherapy and Oncology, 77(2):191-193, Nov., 2005.
Hope A., Lindsay P., El Naqa I., Alaly J., Vicic M., Bradley J., Deasy J., " Modeling radiation pneumonitis risk with clinical, dosimetric, and spatial parameters ,” Int J Radiat Oncol Biol Phys, May 2006 ,Vol. 65, Issue 1, pp. 112-124.
El Naqa I., Bradley J., Blanco A., Lindsay P.E., Vicic M., Hope A., and Deasy J.O., “Multi-variable modeling of radiotherapy outcomes including dose-volume and clinical factors,” Int. J. Radiation Oncology Biol. Phys, March 2006 , Vol. 64, Issue 4, pp 1275-1286.
Megri A., Megri F., El Naqa I., Achard G., "A new tool for the prediction and the analyses of thermal comfort in variable steady operation," Annals of the building and public works (in French), pp. 42-50, February-April, 2006.
El Naqa I., Low D., Bradley J., Vicic M., and Deasy J, "Deblurring of Breathing Motion Artifacts in Thoracic PET Images by Deconvolution Methods," Medical Physics , Vol. 33 no. 10, pp. 3587-3600, October 2006.
Kenneth Biehl, Feng-Ming Kong, Farrokh Dehdashti, Jian-Yue Jin, PhD, Sasa Mutic, Issam El Naqa, PhD, Barry A. Siegel, Jeffrey D Bradley, " FDG-PET Definition of Gross Tumor Volume for Radiotherapy of Non-Small Cell Lung Cancer: Is a single SUV Threshold Approach Appropriate?," Journal of Nuclear medicine, 47(11), pp.1808-12, 2006.
I El Naqa, G Suneja, P E Lindsay, A J Hope, J R Alaly, M Vicic, J D Bradley, A Apte, and J O Deasy," Dose-response explorer: an integrated open source tool for exploring and modeling radiotherapy dose-volume-outcome relationships," Phys. Med. Biol., 51, pp. 5719–5735, 2006
Jeffrey D. Bradley, Ahmed N. Nofal, M.D., I.M. El Naqa, Wei Lu, Jubei Liu, James Hubenschmidt, Daniel A. Low, Robert E. Drzymala, and Divya Khullar, " Comparison of Helical, Maximum Intensity Projection (MIP), and Averaged Intensity (AI) 4D CT imaging for Stereotactic Body Radiation Therapy (SBRT) Planning in Lung Cancer," Radiotherapy and oncology, 81:3, pp. 264–268 , 2006
Alaa Fayed, David G. Mutch, Janet S. Rader, Randall K. Gibb, Matthew A. Powell, Jason Wright, Issam El Naqa, Imran Zoberi, Perry W. Grigsby, "Comparison of High Dose Rate and Low Dose Rate Brachytherapy In the Treatment of Endometrial Carcinoma," Int. J. Radiation Oncology Biol. Phys , Feb 1;67(2):480-4, 2007.
Patricia E. Lindsay, Issam El Naqa, Andrew J. Hope, Milos Vicic, Jeffrey D. Bradley, and Joseph O. Deasy, “Retrospective Monte Carlo dose calculations with limited beam weight information,” Medical Physics, Vol. 34, no. 1, pp. 334-46, 2007.
Gary Christensen, Joo Hyun Song, Wei Lu, Issam El Naqa, Daniel Low, " Tracking Lung Motion with Inverse Consistent Image Registration," Medical Physics, Vol. 34„ no. 6, pp. 2155-2163, 2007.
I. El Naqa, J. Cui, G. Olivera, and J. O. Deasy, “Denoising of Monte Carlo dose distributions using convolution superposition calculations,” Phys. Med. Biol., 52 (2007) N375-N385.
Issam El Naqa, Deshan Yang, Divya Khullar, Sasa Mutic, Jie Zheng, Jeffrey D. Bradley, Perry Grigsby, and Joseph O. Deasy, “Concurrent Multimodality Image Segmentation by Active Contours for Radiotherapy Treatment Planning,” Medical Physics, Vol. 34, 12, pp. 4738-4749, December 2007.
Jeffrey D Bradley, Andrew Hope, Issam El Naqa, Aditya Apte, Patricia E Lindsay, Walter Bosch, John Matthews, William Sause, Mary V. Graham, and Joseph O Deasy “A Nomogram to Predict Radiation Pneumonitis, Derived from a Combined Analysis of RTOG 9311 and Institutional Data,” Int. J. Radiation Oncology Biol. Phys, 69(4):985-92 2007.
Zheng J, Ochoa E, Misselwitz B, Yang D, El Naqa I, Woodard PK, Abendschein D. Targeted Contrast Agent Helps to Monitor Advanced Plaque during Progression: An MRI Study in Rabbits. Investigative Radiology, 43(1):49-55, 2008.
Megri A., El Naqa I., Moschandreas D., Ari H., “Knowledge-Based Analysis Tool to Assess the THMS Pollutant Total Exposure Index and Cumulative Risk,” Intelligent Buildings International, 1:122–1301, 2009.
Lilie L Lin, Issam El Naqa, Jeffrey R Leonard, T.S. Park, Abby S. Hollander, Jeff M Michalski, David B Mansur “Long-term outcome of pediatric patients treated for craniopharyngioma with and without radiotherapy,” Journal of Neurosurgery: Pediatrics;1(2):126-30, 2008.
Xiaowei Wang and Issam M. El Naqa, “Prediction of both conserved and nonconserved microRNA targets in animals,” Bioinformatics, 24(3):325-32, 2008.
Marco Trovo, Jeffrey Bradley, Issam El Naqa, Ethan Foster, Bryan Meyers, Ramaswamy Govindan, Alexander Patterson, “Esophageal Carcinoma with Celiac Nodal Metastases; Curative or Palliative?” Journal of Thoracic Oncology • Volume 3, Number 7, July 2008.
Lakshmi Santanam, Jacqueline Esthappan, Sasa Mutic, Eric E. Klein, S. Murty Goddu, Summer Chaudhari, Sasha Wahab, Issam M. El Naqa Daniel. A. Low, Perry W. Grigsby, M.D. “Estimation Of Setup Uncertainty Using Planar And MVCT Imaging For Gynecological Malignancies, Int. J. Radiation Oncology Biol. Phys, 71(5):1511-7, 2008.
I. El Naqa, P. Grigsby, A. Apte, E. Kidd, E. Donnelly, D. Khullar, S. Chaudhari, D. Yang, M. Schmitt, Richard Laforest, W. Thorstad, and J. O. Deasy, “Exploring feature-based approaches in PET images for predicting cancer treatment outcomes, Pattern recognition, Vol. 42 , no. 6 , pp. 1162-1171, June 2009.
Colleen Lawton, Jeffrey Michalsky, Issam El-Naqa, Mark Buyyounouski, W Robert Lee, Cynthia Menard, Elizabeth O’Meara, Seth Rosenthal, Mark Ritter, and Michael Seider, “RTOG GU Radiation Oncology Specialists Reach Consensus on Pelvic Lymph Node Volumes for High-Risk Prostate Cancer,” Int. J. Radiation Oncology Biol. Phys Jun 1;74(2):383-7, 2009.
Colleen Lawton, Jeffrey Michalski, Issam El-Naqa, Deborah Kuban, W Robert Lee, Seth Rosentahal, Anthony Zietman Howard Sandler, William Shipley, Mark Ritter, Richard Valicenti, Charles Cattan, Mack Roach, Thomas Pisansky, and Michael Seider, “Variation in the Definition of Clinical Target Volumes for Pelvic Nodal Conformal Radiation Therapy for Prostate Cancer,” Int. J. Radiation Oncology Biol. Phys, Jun 1;74(2):377-82, 2009.
Deshan Yang, Wei Lu, Daniel A. Low, Joseph O. Deasy, Andrew J. Hope, Issam El Naqa, “4D-CT motion estimation using deformable image registration and 5D respiratory motion modeling,” Medical Physics, Vol. 35, no. 10, 4577-4590, 2008.
Deshan Yang, Hua Li, Daniel A. Low, Joseph O. Deasy, Issam El Naqa, “Inverse consistency for optical flow deformable image registration algorithms, PMB, Vol. 53 pp. 6143–6165, 2008.
Jovan G. Brankov, Yongyi Yang, Liyang Wei, Issam El Naqa, Miles N. Wernick, “Learning a Channelized Observer for Image Quality Assessment,” IEEE Transactions on medical imaging, 28(7):991-9, 2009
J. Tang, R. M. Rangayyan, J. Xu, I. El Naqa, and Y. Yang, “Computer-aided detection and diagnosis of breast cancer with mammography: recent advances,” IEEE Trans. Information Technology in Biomedicine, Mar;13(2):236-51, 2009
Deshan Yang, Summer R. Chaudhari, S. Murty Goddu, David Pratt, Divya Khullar, Joseph O. Deasy, Issam El Naqa, “Deformable Registration of Abdominal Kilovoltage Treatment Planning CT and Tomotherapy Daily Megavoltage CT for Treatment Adaptation,” Medical Physics, Vol. 36:2, pp. 329-338, February 2009.
Myerson RJ, Garofalo MC, El Naqa I, Abrams RA, Apte A, Bosch WR, Das P, Gunderson LL, Hong TS, Kim JJ, Willett CG, Kachnic LA, “Elective Clinical Target Volumes for Conformal Therapy in Anorectal Cancer: An Radiation Therapy Oncology Group Consensus Panel Contouring Atlas, Int. J. Radiation Oncology Biol. Phys, Jul 1;2009, 74(3):824-30.
Spencer, S.J., Almiron Bonnin, Damian, Deasy, J. O., Bradley J. D., and El Naqa I, “Bioinformatics Methods for Learning Radiation-Induced Lung Inflammation from Heterogeneous Retrospective and Prospective Data, Journal of Biomedicine and Biotechnology, Volume 2009, Article ID 892863, 2009
Yaacov Lawrence, X. Allen Li, Issam El Naqa, Carol A Hahn, Lawrence Marks, Thomas E. Merchant, Adam P. Dicker, “QUANTEC: Radiation Dose Volume Effects In The Brain,” Int. J. Radiation Oncology Biol. Phys, Mar 1;76(3 Suppl):S20-7, 2010
Mack Roach III, Jiho Nam, Giovanna Gagliardi, Issam El Naqa, J. O. Deasy, Lawrence B. Marks, “QUANTEC: Radiation Dose Volume Effects In The Penile Bulb,” Int. J. Radiation Oncology Biol. Phys, Mar 1;76(3 Suppl):S130-4, 2010.
Lawrence B. Marks, Soren M. Bentzen, Joseph O. Deasy, Feng-Ming (Spring) Kong, Jeffrey D. Bradley, Ivan S. Vogelius, Issam El Naqa, Jessica L. Hubbs, Robert D. Timmerman, Mary K. Martel, Andrew Jackson, “QUANTEC: Radiation Dose Volume Effects in the Lung,” Int. J. Radiation Oncology Biol. Phys, Mar 1;76(3 Suppl):S70-6 , 2010
Jeff M. Michalski, Colleen Lawton, Issam El Naqa, Mark Ritter, Elizabeth O’Meara, Michael J. Seider, K W. Robert Lee, Seth A. Rosenthal, Thomas Pisansky, Charles Catton, Richard k. Valicenti, Anthony L. Zietman, Walter R. Bosch, Howard Sandler, Mark k. Buyyounouski, and Cynthia Menard, “Development of RTOG Consensus Guidelines for the Definition of the Clinical Target Volume for Postoperative Conformal Radiation Therapy for Prostate Cancer,” Int. J. Radiation Oncology Biol. Phys, 2010 Feb 1;76(2):361-8.
Issam El Naqa, Jeffrey D. Bradley, Patricia E. Lindsay, Andrew J. Hope, and Joseph O. Deasy, “Predicting radiotherapy outcomes using statistical learning techniques,” Phys. Med. Biol., Vol. 54, pp. 9-30, 2009
Chun Yang, Richard Bach, Jie Zheng, Issam El Naqa, Pamela K Woodard, Zhong zhao Teng, Kristen Billiar, Dalin Tang, “In Vivo IVUS-Based 3D Fluid-Structure Interaction Models with Cyclic Bending and Anisotropic Vessel Properties for Human Atherosclerotic Coronary Plaque Mechanical Analysis,” IEEE Transactions on Biomedical Engineering, vol. 56, no. 10, 2009
S. Murty goddu, Sridhar Yaddanapudi, Olga L Pechenaya, Summer R Chaudhari, Eric E Klein, Divya Khullar, Issam El Naqa, Sasa Mutic, Sasha Wahab, Lakshmi Santanam, Imran Zoberi, Daniel A Low, “Dosimetric Consequences of Uncorrected Setup Errors in Helical Tomotherapy Treatments of Breast-cancer Patients,” Radiotherapy and Oncology 93(1):64-70, 2009
Xiaoxia Hu, Dusten M. Macdonald, Phyllis C. Huettner, Zhihui Feng, Issam M. El Naqa a, Julie K. Schwarz, David G. Mutch, Perry W. Grigsby, Simon N. Powell, Xiaowei Wang, “A miR-200 microRNA cluster as prognostic marker in advanced ovarian cancer,” Gynecologic Oncology, 114(3):457-64, 2009.
Jeffrey D. Bradley, Issam El Naqa, Robert E. Drzymala, Marco Trovo, Griffin Jones, and Mary Dee Denning, “Stereotactic Body Radiation Therapy for Early-Stage NSCLC; The Pattern of Failure Is Distant,” Int. J. Radiation Oncology Biol. Phys Jul 15;77(4):1146-50, 2010.
Traves Crabtree, Chadrick E. Denlinger, Bryan F. Meyers, Issam El Naqa, Jennifer Zoole, A. Sasha Krupnick, Daniel Kreisel, G. Alexander Patterson, Jeffrey D. Bradley, “Stereotactic Body Radiation Therapy vs. Surgical Resection for Stage I Non-Small Cell Lung Cancer,” Journal of Thoracic and Cardiovascular Surgery (JTCVS), Aug;140(2):377-86, 2010.
Habib Zaidi and Issam El Naqa, “PET-guided delineation of radiation therapy treatment volumes: A survey of image segmentation techniques,” Eur J Nucl Med Mol Imaging, 37(11):2165-87, 2010.
Issam El Naqa, Jeffrey D. Bradley, Yi Mu, Ellen Huang, Patricia E. Lindsay, Andrew J. Hope, Aditya Apte, James Alaly, and Joseph O. Deasy “Datamining Approaches for Modeling Tumor Control Probability,” Acta Oncologica, 49(8):1363-73, 2010.
Yang D, Zheng J, Nofal A, Wu Y, Deasy J, El Naqa I. Techniques and software tool for 3D multimodality medical image segmentation, Journal of radiation oncology informatics, 1:(1), 1:22, 2009
Oh JH, Apte A, Al-Lozi R, Bradley J, and El Naqa I, Towards prediction of radiation pneumonitis arising from lung cancer patients using machine learning approaches, Journal of radiation oncology informatics, 1:(1), 30:43, 2009
Marco Trovo, Anna Linda, Issam El Naqa, Cylen Javidan-Nejad, Jeffrey Bradley, “Early and late lung radiographic injury following stereotactic body radiation therapy (SBRT),” Lung Cancer, Jul;69(1):77-85, 2010
Schiller TW, Chen Y, El Naqa I, Deasy J., “Modeling radiation-induced lung injury risk with an ensemble of support vector machines,” Neurocomputing, Volume 73 Issue 10-12, pp. 1861-1867, 2010.
Deshan Yang, S. Murty Goddu, Wei Lu, Olga L. Pechenaya, Yu Wu, Joseph O. Deasy, Issam El Naqa and Daniel A. Low, “Deformable Image Registration on Partially Matched Images for Radiotherapy Applications,” Medical Physics, 2010 Jan;37(1):141-5
Kristy Brock et al.,“Results of a Multi-Institution Deformable Registration Accuracy Study (MIDRAS),” by Kristy Brock on behalf of the Deformable Registration Accuracy Consortium Int. J. Radiation Oncology Biol. Phys, (Role: Contributor), 2010 Feb 1;76(2):583-96.
Karen Lim, William Small, Jr., Lorraine Portelance, David Gaffney, Beth Erickson, Jennifer de los Santos, Satoshi Ishikura, Carien Creutzberg; Walter Bosch; Issam El Naqa and Anthony Fyles, “Consensus Guidelines For Delineation Of Clinical Target Volume For Intensity-Modulated Pelvic Radiotherapy For The Intact Cervix,” Int. J. Radiation Oncology Biol. Phys, 2011
Ron Chen; Jesse J. Parry; Walter J. Akers; Mikhail Y. Berezin; Issam M. El Naqa; Samuel Achilefu; W. Barry Edwards; and Buck E. Rogers, Multimodality Imaging of Gene Transfer Using a Receptor-Based Reporter Gene, Sep;51(9):1456-63, 2010.
Rawan Al-Lozi, X. Allen Li, Julia White,Aditya Apte, An Tai, Jeff M. Michalski, Walter R. Bosch, and Issam El Naqa, Tools for Consensus Analysis of Experts’ Contours for Radiotherapy Structure Definitions, Radiotherapy and Oncology, Dec;97(3):572-8, 2010.
Jung Hun Oh, Yongyi Yang, and Issam El Naqa, Adaptive Learning for Relevance Feedback: Application to Digital Mammography, Medical Physics, Vol. 37, No. 8, August 2010\
Sasa Mutic, R. Scott Brame, Swetha Oddiraju, Parag Parikh, Melisa A. Westfall, Merilee L. Hopkins, Angel D. Medina, Jonathan Danieley, Jeff M. Michalski, Issam M. El Naqa, Daniel A. Low, and Bin Wu, Medical Physics, Vol. 37, No. 9, September 2010.
Ellen X. Huang, J. O. Deasy, M. Trovo, I. El Naqa, A.J. Hope, P. E. Lindsay, and J. D. Bradley, The Impact of Heart and Lung Irradiation on the Risk of Radiation Pneumonitis: modeling based on institutional data, Acta Oncologica, 50(1):51-60, 2011.
Aditya P Apte, R Al-Lozi, G Pereira, M Johnson, D Mansur, I El Naq, “A Graphical Tool and Methods for Assessing Margin Definition From Daily Image Deformations,” JROI, Vol 2, No 1, pp. 9-19 (2010).
Deshan Yang, Ryan S Brame , Issam El Naqa , Aditya Apte , Yu Wu , SreeKrishna Murty Goddu , Sasa Mutic , Joseph Deasy , Daniel A Low, “DIRART - A software suite for deformable image registration and adaptive radiotherapy research", Medical Physics, 2011 Jan;38(1):67-77.
Cary Dehing-Oberije, Dirk De Ruysscher, Steven Petit, Jan Van Meerbeeck, Katrien Vandecasteele, Wilfried De Neve, Anne Marie C. Dingemans, Issam El Naqa, Joseph Deasy, Jeff Bradley, Ellen Huang, Philippe Lambin, Development, external validation and clinical usefulness of a practical prediction model for radiation-induced dysphagia in lung cancer patients, Radiotherapy and Oncology, 97(3):455-61, 2010
Jung Hun Oh, Jeffrey Craft, Rawan Al-Lozi, Manushka Vaidya, Yifan Meng, Joseph O Deasy, Jeffrey D Bradley and Issam El Naqa, “A Bayesian network approach for modeling local failure in lung cancer.” PMB, 56 (2011) 1635–1651.
Jung Hun Oh, Jeffrey M. Craft, Reid Townsend, Joseph O. Deasy, Jeffrey D. Bradley, and Issam El Naqa, “A Bioinformatics Approach for Biomarker Identification in Radiation-Induced Lung Inflammation from Limited Proteomics Data,” Journal of Proteomics Research (JPR), 10(3):1406-15, 2011.
Benjamin White, Daniel Low, Tianyu Zhao, Sara Wuenschel, Wei Lu, Sasa Mutic, Issam El Naqa, “An Investigation of a Prospective Pulmonary Gating Algorithm for 4D Computed Tomography Simulation,” Medical Physics, 2011 Mar;38(3):1587-95.
Stephanie M. Perkins, Joshua B. Rubin, Jeffrey R. Leonard, Matthew D. Smyth, Issam El Naqa, Joseph R. Simpson, Tae S. Park, David B. Mansur, Glioblastoma in Children: A Single Institution Experience, IJROBP, 2011 Jul 15;80(4):1117-21
Wang D, Bosch W, Kirsch DG, Al Lozi R, El Naqa I, Roberge D, Finkelstein SE, Petersen I, Haddock M, Chen YL, Saito NG, Hitchcock YJ, Wolfson AH, Delaney TF, “Variation in the Gross Tumor Volume and Clinical Target Volume for Preoperative Radiotherapy of Primary Large High-Grade Soft Tissue Sarcoma of the Extremity Among Rtog Sarcoma Radiation Oncologists,” IJROBP, 2011 Dec 1;81(5):e775-80
Olsen JR, Robinson CG, El Naqa I, Creach KM, Drzymala RE, Bloch C, Parikh PJ, Bradley JD, “Dose-Response for Stereotactic Body Radiotherapy in Early-Stage Non-Small-Cell Lung Cancer,” Int J Radiat Oncol Biol Phys. 2011 Apr 6. [Epub ahead of print].
Ahmed Megri, Issam El Naqa, Prediction Of The Thermal Comfort Indices: Pmv, Tsens, Et*, Set* And Disc Using Improved Support Vector Machine Classifiers And Nonlinear Kernel Functions, Indoor and Built Environment, 2011, accepted.
Ellen X. Huang, J. D. Bradley, I. E. Naqa, A. Hope, P. Lindsay, W. Bosch, J. Matthews, W. Sause, M. V. Graham, and J. O. Deasy, Modeling the risk of acute esophagitis for Mallinckrodt Institute of Radiology and RTOG 93-11 lung cancer patient cohorts, IJROBP, 2012 Apr 1;82(5):1674-9.
Hiram Gay, Joseph H. Barthold, Elizabeth O’Meara, Walter R. Bosch, Ph.D.,* Issam El Naqa, Rawan Al-Lozi, Seth A. Rosenthal, Colleen Lawton, W. Robert Lee, M.D. Howard Sandler, M.D., Anthony Zietman, Robert Myerson, Laura A. Dawson, Christopher Willett, Lisa A. Kachnic, Anuja Jhingran, Lorraine Portelance, Janice Ryu, William Small, Jr., David Gaffney, Akila N. Viswanathan, and Jeff M. Michalski, “Pelvic Normal Tissue Contouring Guidelines for Conformal Radiation Therapy; A Radiation Therapy Oncology Group Consensus Panel Atlas,” IJROBP, Jul 1;83(3):e353-62, 2012.
I El Naqa, “Machine learning methods for predicting tumour response in lung cancer,” WIRES: Datamining and Knowledge Discovery, vol. 2, no. 2, pp 99 – 192, 2012
Manushka Vaidya, Kimberly M. Creach, Jennifer Frye, Farrokh Dehdashti, Jeffrey D. Bradley, and Issam El Naqa, “Using FDG-PET/CT Image Characteristics for Predicting Radiotherapy Response in Lung Cancer,” Radiotherapy and Oncology, 2012 Feb;102(2):239-4
Kimberly M. Creach, Issam El Naqa, Jeffrey D. Bradley, Jeffrey R. Olsen, Parag J. Parikh, Robert E. Dryzmala, Charles Bloch, Clifford G. Robinson, “Dosimetric predictors of chest wall pain after lung stereotactic body radiotherapy,” Radiotherapy and Oncology, 2012 Jul;104(1):23-7
Habib Zaidi, Carolina Llina Fuentes, and Issam El Naqa, “Comparative methods for PET image segmentation in pharyngolaryngeal squamous cell carcinoma,” Eur J Nucl Med Mol Imaging, 2012 May;39(5):881-91
Sangkyu Lee, Gabriela Stroian, Neil Kopek, Mahmood AlBahhar, Jan Seuntjens and Issam El Naqa, Analytical modeling of regional radiotherapy dose response of lung, Phys. Med. Biol. 57 3309–3321, 2012.
Issam El Naqa, Piotr Pater, Jan Seuntjens, Monte Carlo Role in Radiobiological Modeling of Radiotherapy Outcomes, Phys. Med. Biol. 57 R75-R97, 2012.
Beth Kidd, Issam El Naqa, Siegel BA, Dehdashti F, Grigsby PW, FDG-PET-based prognostic nomograms for locally advanced cervical cancer, Gyn Onc, 2012 Oct;127(1):136-40
Matthew E. Johnson, Gisele C. Pereira, Issam M. El Naqa, S. Murty Goddu, Rawan Al-Lozi, Aditya Apte, David B. Mansur, “Determination of planning target volume for whole stomach irradiation using daily megavoltage CT images,” Practical Radiation Oncology, in press, 2012
B. White, T. Zhao, J. Lamb , S. Wuenschel , J. Bradley , I. El Naqa , D. Low, “Distribution of Lung Tissue Motion During Free Breathing,” Medical Physics, Med Phys. 2013 Apr;40(4).
C. Robinson, T. DeWees, I. El Naqa, K. Creach, J. Olsen, T. Crabtree, B. Meyers*, V. Puri, P. Parikh, J. Bradley, “Patterns of Failure and Survival after Stereotactic Body Radiation Therapy or Lobar Resection for Clinical Stage I Non-small-cell Lung Cancer,” Journal of Thoracic Oncology (JTO), 2013 Feb;8(2):192-201
Daniel Markel, Habib Zaidi, Issam El Naqa, “Novel Multimodality Segmentation using Level Sets and Jensen-Renyi Divergence,” Medical Physics, 40, 121908 (2013).
El Naqa I., “The role of quantitative PET in predicting cancer treatment outcomes,” Special issue on Trends in PET Quantification, Clinical and Translational Imaging, Volume 2, Issue 4 (2014), Page 305-320.
El Naqa I., “Biomedical informatics and panomics for evidence-based radiation therapy," WIRES: Data Mining and Knowledge Discovery, Volume 4, Issue 4, pages 327–340, July/August 2014.
James Coates, Norma Ybarra, Issam El Naqa, “Novel Non-Invasive Plethysmograph for Robust Assessment and Prediction of Radiation-Induced Lung Injury,” Physiological Measurement, 35 (2014) 1737–1750.
Piotr Pater, Mario A Bernal, Jan P Seuntjens Issam El Naqa, “On the Consistency of Monte Carlo Track Structure DNA Damage Simulations,” Medical Physics, Vol. 41, no. 12, 2014,
Mathieu Hatt, Mohamed Majdoub, Martin Vallières, Florent Tixier, David Groheux, Marc Espié, Antoine Martineau, Olivier Pradier, Roland Hustinx, Catherine Cheze Le Rest, Issam El Naqa, Dimitris Visvikis, “FDG PET uptake characterization through texture analysis: investigating the complementary nature of heterogeneity and functional tumor volume in a multi-cancer model patient cohort,” JNM, 2015 Jan;56(1):38-44.
Sangkyu Lee, Norma Ybarra, Krishinima Jeyaseelan, Jan Seuntjens, and Issam El Naqa, “Bayesian Network ensemble as a multivariate strategy to predict radiation pneumonitis risk.” Medical Physics, 2015, May;42(5):2421-30
James Coates, Krishinima Jeyaseelan, Norma Ybarra, Marc David, Sergio Faria, Luis Souhami, Fabio Cury, Marie Duclos, Issam El Naqa, “Contrasting Analytical and Data-driven Frameworks for Radiogenomic Modeling of Normal Tissue Toxicities in Prostate Cancer.” Radiotherapy and Oncology, 2015 Apr;115(1):107-13
M Vallières, C R Freeman, S R Skamene and I El Naqa, “A Radiomics model from joint FDG-PET and MR texture features for prediction of lung metastases in soft-tissue sarcomas of the extremities, PMB, 2015 Jul 7;60(14):5471-96 (Editor’s choice)
Ola M Maria, Ahmed M Maria, Norma Ybarra, PhD, Krishinima Jeyaseela, Sangkyu Lee, Jessica Perez, Shirley Lehnert, Sergio Faria, Monica Serban, Jan Seuntjens, Issam El Naqa, “Mesenchymal Stem Cells Adopt Lung Cell Phenotype in Normal and Irradiation-Induced Lung Injury Conditions, (Applied Immunohistochemistry & Molecular Morphology), 2015 Jul 18. [Epub ahead of print]
Karen Lim, Beth Erickson, Ina M Jürgenliemk-Schulz, David Gaffney, Carien Creutzberg, Akila Viswanathan, Lorraine Portelance, Sushil Beriwal, Aaron Wolfson, Walter Bosch, Jennifer De Los Santos, Catheryn Yashar, Anuja Jhingran, Mahesh Varia, Issam El Naqa, Bronwyn King, Anthony Fyles, “Variability In Clinical Target Volume Delineation For Intensity Modulated Radiotherapy In Three Challenging Cervix Cancer Scenario,” Practical Radiation Oncology, 2015, accepted.

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