Conference Proceedings

El Naqa I., Mismar J., “Image Enhancement of Coronary Angiograms by Nonlinear Filtering,” In Proceedings of the Freiburger Workshop for Digital Image Processing in Medicine, 10-11 March, 1997, Freiburg, Germany
El Naqa I., Wernick M., Yang Y., Galatsanos N., “Image Retrieval Based on Similarity Learning,” In Proceedings of International Conference on Image Processing, October 2000, Vancouver, Canada.
El Naqa I., Wernick M., Yang Y., Galatsanos N., Nishikawa, R., “Support Vector Machine for Detection of Microcalcifications in Mammograms”, In Proceedings of International Symposium on Biomedical Imaging, Washington DC, July, 2002.
El Naqa I., Wernick M., Yang Y., Galatsanos N., Nishikawa, R., “Support Vector Machine for Detection of Microcalcifications in Mammograms, ” In Proceedings of International Conference on Image Processing, Rochester, September, 2002.
El Naqa I., Wernick M., Yang Y., Galatsanos N., “Content-Based Image Retrieval for Digital Mammography,” In Proceedings of International Conference on Image Processing, Rochester, September, 2002.
El Naqa I., Yang Y., Galatsanos N., Wernick M., “Relevance Feedback based on incremental learning for mammogram retrieval,” In Proceedings of International Conference on Image Processing, Barcelona, Spain, 2003.
Megri A., El Naqa I., Megri F., “A Learning Machine Approach for Automatic Prediction of Thermal Comfort Indices PMV and PPD”, Colloque Interuniversitaire Franco-Québécois (CIFQ), Canada, 2003.
Megri A., El Naqa I., Megri F., “Independent Component Analysis for Thermal Comfort”, Colloque Interuniversitaire Franco-Québécois (CIFQ), Canada, 2003.
El Naqa I., Low D. A., Deasy J.O., Amini A., Parikh P., and Nystrom M., “Automated Breathing Motion Tracking for 4D Computed Tomography,” In Proceedings of Medical Imaging Conference (MIC), Portland, OR, 2003.
El Naqa I., Deasy J., and Vicic M., “Locally Adaptive Denoising of Monte Carlo Dose Distributions via Hybrid Median Filtering”, In Proceedings of Medical Imaging Conference (MIC), Portland, OR, 2003.
El Naqa I., Low D. A., Deasy J.O., Amini A., Parikh P., and Nystrom M., “Automated Breathing Motion Tracking for 4D Computed Tomography,” In Proceedings of Medical Imaging Conference (MIC), Portland, OR, 2003.
Brankov J., El Naqa I., Yongyi Y., Wernick M., “Learning a nonlinear channelized observer For image quality assessment,” In Proceedings of Medical Imaging Conference (MIC), Portland, OR, 2003.
El Naqa I., Low D. A., Wahab S., Parikh P., Nystrom M., Hubenschmidt J., Deasy J.O., Amini A., Christensen G., and Bradley J., “Automated Registration for lung 4D Computed Tomography,” in Proceedings of SPIE, Vol. 5369, pp. 100-106, 2004.
El Naqa I., Wernick M., Yang Y., Galatsanos N., “Mammogram Retrieval Based On Incremental Learning”, In Proceedings of International Symposium on Biomedical Imaging, Arlington VA , 2004
El Naqa I, Low DA, Nystrom M, Parikh P, Lu W, Deasy JO, Amini A, Hubenschmidt J, and Wahab S, “An Optical Flow Approach for Automated Breathing Motion Tracking in 4D Computed Tomography,” Proceedings of the 14th International Conference on the Use of Computers in Radiation Therapy, Seoul, Korea, May 9-14, 2004, 74-77.
D.A. Low, P.J. Parikh, I. El Naqa, M. Nystrom, W. Lu, J.P. Hubenschmidt, S.H. Wahab, S. Mutic, A.K. Singh, G. Christensen, and J.D. Bradley, Quantitative 4-D CT using a multislice CT scanner, Proceedings of the 14th International Conference on the Use of Computers in Radiation Therapy, Seoul, Korea, May 9-14, 2004, 57-61.
S. Wahab, P. Parikh, M. Nystrom, I. El Naqa, J. Hubenschmidt, B. Pierburg, W. Lu, J.D. Bradley, and D.A. Low, Treatment planning using four dimensional computed tomography, Proceedings of the 14th International Conference on the Use of Computers in Radiation Therapy, Seoul, Korea, May 9-14, 2004, 62-66.
El Naqa I, Bradley J, Deasy J, Biehl K, Laforest R, and Low D “Improved Analysis of PET Images for Radiation Therapy Proceedings of the 14th International Conference on the Use of Computers in Radiation Therapy, Seoul, Korea, May 9-14, 2004, 361-363.
Christensen GE, Song JH, El Naqa I, Lu W, and Low DA, “Tracking Lung Motion: Correlating Inverse Consistent Image Registration and Spirometry,” Tracking lung motion: Correlating inverse consistent image registration and spirometry, Proceedings of the 14th International Conference on the Use of Computers in Radiation Therapy, Seoul, Korea, May 9-14, 2004, 493-496.
El Naqa I., Bradley J.; Deasy J., "Machine Learning Methods for radiobiolgical outcome modeling," in AAPM Symposium Proceedings No. 14, Physical, Chemical and Biological Targeting in Radiation Oncology, Edited by Minesh Mehta, Bhudatt Paliwal, and Søren Bentzen, Medical Physics Publishing, 2005, pp. 150-159.
El Naqa I., Low DA, Bradley JD, Vicic M., and Deasy JO, “Compensation of breathing motion artifacts in thoracic pet images by wavelet-based deconvolution”, In Proceedings of International Symposium on Biomedical Imaging, Washington DC, July, 2006.
Wernick M N, Yang Y., Brankov J G., Wei L, Galatsanos N P, El Naqa I., "Machine learning of human responses to images" SPIE Electronic Imaging, Vol. 6065, 2006
Yang D, Deasy JO, Low DA, El Naqa I, “Level set-based non-rigid 3D image registration and motion estimation,” SPIE, Vol. 6512, 2007.
J Cui, S Davidson, K Zakaryan, I El Naqa, V Willcut, M Wiesmeyer, D Followill, J Deasy, “A Versatile Source Model for Monte Carlo Dose Calculations of External Radiotherapy,” Proceedings of the 15th International Conference on the Use of Computers in Radiation Therapy (ICCR), Toronto, Canada, 2007.
A Apte, J Deasy, G Suneja, A Hope, J Bradley, P Lindsay, J Alaly, I El Naqa, “Dose Response Explorer: an open source program for radiotherapy outcomes data-mining and modeling,” Proceedings of the 15th International Conference on the Use of Computers in Radiation Therapy (ICCR), Toronto, Canada, 2007.
I El Naqa, P Grigsby, A Apte, D Khullar, D Yang, E Kidd, M Schmitt, R Laforest, J Deasy, “Analysis of PET heterogeneity for prediction of outcomes in radiotherapy,” Proceedings of the 15th International Conference on the Use of Computers in Radiation Therapy (ICCR), Toronto, Canada, 2007.
D Yang, W Lu, D Low, J Deasy, A Hope, I El Naqa, “4D-CT reconstruction by using optical flow motion estimation,” Proceedings of the 15th International Conference on the Use of Computers in Radiation Therapy (ICCR), Toronto, Canada, 2007
V. Clark, I. El Naqa, P. Lindsay, A. Hope, J. Bradley, J. Deasy, “Going Beyond Dose-volume Constraints in Treatment Planning: Old and New Metrics for Judging Normal Tissue Complication Risks,” Proceedings of the 15th International Conference on the Use of Computers in Radiation Therapy (ICCR), Toronto, Canada, 2007.
D. Khullar, A. Apte, A. Hope, I. El Naqa, J. Alaly, W. Bosch, J. Matthews, J. Deasy, “The Computational Environment for Radiotherapy Research: New Tools and Present Status,” Proceedings of the 15th International Conference on the Use of Computers in Radiation Therapy (ICCR), Toronto, Canada, 2007.
I. El Naqa, D. Yang, and J. Deasy, “Automated Estimation of The Biophysical Target for Radiotherapy Treatment Planning Using Multimodality Image Analysis,” to appear in Proceedings of International Conference on Image Processing, San Antonio, TX, 2007.
Phaneendra K. Yalavarthy, Daniel Low, Camille Noel, Zhouping Wei, Deshan Yang, Aditya Apte, Jeffrey Bradley, Joseph Deasy, and Issam El Naqa, “Current Role of PET in Oncology: Potentials and Challenges in the Management of Non-Small Cell Lung Cancer,” Asilomar Conference on Signals and Systems, Monterey, CA, 2008 (Invited).
Deshan Yang, Hua Li, Daniel Low, Joseph Deasy, Issam El Naqa, “A Fast Inverse Consistent Deformable Image Registration Method Based on Symmetric Optical Flow Computation,” Asilomar Conference on Signals and Systems, Monterey, CA, 2008.
Issam El Naqa, Jeffrey D. Bradley, and Joseph O Deasy, “Nonlinear Kernel-based Approaches for Predicting Normal Tissue Toxicities,” IEEE Proceedings of the International Conference on Machine Learning and Applications (ICMLA), San Diego, CA, 2008, pp.539-544.
I. El Naqa, M. Vaidya, A. Apte, F. Dehdashti, J.O. Deasy and J.D. Bradley, “Predicting Response in Lung Cancer from FDG-PET Uptake Characteristics,” 11th World Congress on Medical Physics and Biomedical Engineering, Munich, Germany, September 7-12, 2009
Deshan Yang, Issam El Naqa, Aditya Apte Yu Wu, Sreekrishna M.Goddu Sasa, Mutic, Joseph O. Deasy, Daniel Low, ““DIRART – A Software Suite for Deformable Image Registration and Adaptive Radiotherapy Research,” 11th World Congress on Medical Physics and Biomedical Engineering, Munich, Germany, September 7-12, 2009
Issam El Naqa, Jung Hun Oh, Yongyi Yang, “Online Learning of Relevance Feedback from Expert Readers for Mammogram Retrieval,” Asilomar Conference on Signals and Systems, Monterey, CA, 2009.
Jung Hun Oh, Rawan Al-Lozi, and Issam El Naqa, “Application of Machine Learning Techniques for Prediction of Radiation Pneumonitis in Lung Cancer,” International Conference on Machine Learning and Applications (ICMLA), Miami, FL, 2009
Todd W. Schiller, Yixin Chen, Issam El Naqa, and Joseph O. Deasy, “Improving Clinical Relevance in Ensemble Support Vector Machine Models of Radiation Pneumonitis Risk,” International Conference on Machine Learning and Applications (ICMLA), Miami, FL, 2009
Jung Hun Oh and Issam El Naqa, “Bayesian network learning for detecting reliable interactions of dose-volume related parameters in radiation pneumonitis,” International Conference on Machine Learning and Applications (ICMLA), Miami, FL, 2009
S. Mutic, S. Oddiraju, P. Parikh, R. Brame, I. El Naqa, D. Low, B. Wu, Long-term impact of electronic near-hit and error reporting system on process improvement and patient safety in radiation oncology, Proceedings of the International Conference on Modern Radiotherapy, Versailles, France, December 2-4, 2009, 104-105
J. Deasy, D. Khullar, A. Apte, I. El Naqa, “Recent Improvements to CERR: A Computational Environment for Radiotherapy Research,” ICCR 2010, Amsterdam, 2010.
J. Deasy, J. Oh , A. Apte, I. El Naqa, “Tools for Extracting and Analyzing Dose-Volume Outcomes Relationships: Improvements to the Dose Response ExplorEr System (DREES), ICCR 2010, Amsterdam, 2010.
Isuru Sammana Dasanayake, Issam El Naqa, Jr-Shin Li, “Kalman Filtering for IMRT Optimization", IEEE Control Systems Society Conference (CDC), 2010.
Jung Hun Oh, Jeffrey Craft, Rawan Al-Lozi, Manushka Vaidya, Yifan Meng, Joseph O Deasy, Jeffrey D Bradley, and Issam El Naqa, “Predicting local failure in lung cancer using Bayesian networks, ICMLA, Washington DC, 2010.
Aditya P Apte, R Al-Lozi, G Pereira, M Johnson, D Mansur, I El Naqa, “Methods for Assessing Margin Definition From Daily Image Deformations,” ICMLA, Washington DC, 2010.
I El Naqa, An SVM Anomaly Detector for Radiotherapy Quality Assurance Using Machine Learning, ICMLA, Hawaii, 2011
Susannah Hickling, Pierre Léger, Issam El Naqa, “Simulation and experimental detection of radiation-induced acoustic waves from a radiotherapy linear accelerator,” IEEE International Ultrasonics Symposium, Chicago, IL, 2014.
James Coates, Asha K. Jeyaseelan, Norma Ybarra, Jessie Tao, Marc David, Sergio Faria, Luis Souhami, Marie Duclos, Fabio Cury, Issam El Naqa “Evaluation and Visualization of Radiogenomic Modeling Frameworks for the Prediction of Normal Tissue Toxicities.” IUPESM 2015 World Congress On Medical Physics & Biomedical Engineering, Toronto, ON, 2015
Yana Zlateva, Issam El Naqa, “Cherenkov emission dosimetry for electron beam radiotherapy: a Monte Carlo feasibility study of absolute dose prediction,” IUPESM 2015 World Congress On Medical Physics & Biomedical Engineering, Toronto, ON, 2015
Daniel Markel, John Larkin, Pierre Leger, Ives R. Levesque, Issam El Naqa, “Development of a Multi-Modality 4D biomechanical Phantom for Evaluation of Simultaneous Registration/Segmentation Algorithms” IUPESM 2015 World Congress On Medical Physics & Biomedical Engineering, Toronto, ON, 2015
Chiara D. Soffientini, Elisabetta De Bernardi, Giuseppe Baselli, Issam El Naqa, “GMM guided automated Level Set algorithm for PET image segmentation,” IUPESM 2015 World Congress On Medical Physics & Biomedical Engineering, Toronto, ON, 2015

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