Publications

      Main Publications (H-index 67, i10-index 109; *: Corresponding author)

1. 1. Rachael Hamby, Qiang Cai and Hailing Jin*: RNA communication between organisms inspires innovative eco-friendly strategies for disease control. Nature Reviews Molecular Cell Biology. 2025, 26(2):81-82, doi.org/10.1038/s41580-024-00807-y.

   2. Shumei Wang, Paul R.J. Birch and and Hailing Jin*: Extracellular vesicles: a new avenue for mRNA delivery. Trends in Plant Science. 2024, 29(8):P845-847. 

   3. Shumei Wang, Baoye He, Huaitong Wu, Qiang Cai, Obed Ramírez-Sánchez, Cei Abreu-Goodger, Paul R. J. Birch, and Hailing Jin*: Plant mRNAs move into a fungal pathogen via extracellular vesicles to reduce infection. Cell Host & Microbe. 2024, 32(1):93-105.e6. doi: 10.1016/j.chom.2023.11.020.

   4. Baoye He, Huan Wang, Guosheng Liu, Angela Chen, Alejandra Calvo, Qiang Cai, Hailing Jin*: Fungal small RNAs ride in extracellular vesicles to enter plant cells through clathrin-mediated endocytosis. Nature Communications. 2023 Jul 20;14(1):4383. doi: 10.1038/s41467-023-40093-4. PMID: 37474601; PMCID: PMC10359353.

   5. Lulu Qiao, Jonatan Niño-Sánchez, Rachael Hamby, Luca Capriotti, Angela Chen, Bruno Mezzetti, Hailing Jin*: Artificial nanovesicles for dsRNA delivery in spray-induced gene silencing for crop protection. Plant Biotechnol J. 2023, doi: 10.1111/pbi.14001.  

   6. Chen, A., Halilovic, L., Shay, J.-H., Koch, A., Mitter, N., & Jin, H.* (2023). Improving RNA-based crop protection through nanotechnology and insights from cross-kingdom RNA trafficking. Current Opinion in Plant Biology, 102441. https://doi.org/10.1016/j.pbi.2023.102441.

   7. Cai, Q., Halilovic, L., Shi, T., Chen, A., He, B., Wu, H., & Jin, H.* (2023). Extracellular vesicles: cross-organismal RNA trafficking in plants, microbes, and mammalian cells. Extracellular Vesicles and Circulating Nucleic Acids, 4(2), 262-282. https://doi.org/10.20517/evcna.2023.10.

   8. Niño-Sánchez J, Sambasivam PT, Sawyer A, Hamby R, Chen A, Czislowski E, Li P, Manzie N, Gardiner DM, Ford R, Xu ZP, Mitter N, Hailing Jin*: BioClay™ prolongs RNA interference-mediated crop protection against Botrytis cinerea. J Integr Plant Biol. 2022, 64(11):2187-2198.  doi: 10.1111/jipb.13353.  

   9. Angela Chen, Baoye He, Hailing Jin*:Isolation of Extracellular Vesicles from Arabidopsis. Curr Protoc. 2022 Jan;2(1):e352. doi: 10.1002/cpz1.352.

   10. Chien-Yu Huang and Hailing Jin*: Coordinated Epigenetic Regulation in Plants: A Potent Managerial Tool to Conquer Biotic Stress. Front Plant Sci. 2022 Jan 3;12:795274. doi: 10.3389/fpls.2021.795274. eCollection 2021.

   11. Chien-Yu Huang, Karla Araujo, Jonatan Niño Sánchez, Gregory Kund, John Trumble, Caroline Roper, Kristine Elvin Godfrey, and Hailing Jin*: A stable antimicrobial peptide with dual functions of treating and preventing citrus Huanglongbing. PNAS, 2021, DOI: 10.1073/pnas.2019628118.

   12. Baoye He, Qiang Cai, Lulu Qiao, Chien-Yu Huang, Shumei Wang, Weili Miao, Tommy Ha, Yinsheng Wang, Hailing Jin*: RNA-binding proteins contribute to small RNA loading in plant extracellular vesicles. Nature Plants. 2021, doi: 10.1038/s41477-021-00901-5.

   13. Chien-Yu Huang, Diana Sanchez Rangel, Xiaobo Qin, Christine Bui, Ruidong Li, Zhenyu Jia, Xinping Cui, Hailing Jin*: The chromatin remodeling protein BAF60/SWP73A regulates the plant immune receptor NLRs. Cell Host & Microbe, 2021, S1931-3128(21)00035-4. doi: 10.1016/j.chom.2021.01.005.

   14. Qiang Cai, Baoye He, Shumei Wang, Stephen Fletcher, Dongdong Niu, Neena Mitter, Paul RJ Birch and Hailing Jin*: Message in a bubble: shuttling small RNAs and proteins between cells and interacting organisms using extracellular vesicles. Annual Review of Plant Biology, 2021, doi: 10.1146/annurev-arplant-081720-010616.

   15. Lulu Qiao, Chi Lan, Luca Capriotti, Audrey Ah-Fong, Jonatan Nino Sanchez, Rachael Hamby, Jens Heller, Hongwei Zhao, N. Louise Glass, Howard S. Judelson, Bruno Mezzetti, Dongdong Niu, Hailing Jin*: Spray-induced gene silencing for disease control is dependent on the efficiency of pathogen RNA uptake. Plant Biotechnology Journal, 2021, doi: 10.1111/pbi.13589.

   16. Yifan Huang, Shumei Wang, Qiang Cai, Hailing Jin*: Effective methods for isolation and purification of extracellular vesicles from plants. J Integr Plant Biol. 2021,  doi: 10.1111/jipb.13181.  

   17. Dongdong Niu, Rachael Hamby, Jonatan Nino Sanchez, Qiang Cai, Qin Yan and Hailing Jin*: RNAs — a new frontier in crop protection. Current Opinion in Biotechnology, 2021, https://doi.org/10.1016/j.copbio.2021.06.005.

   18. Baoye He, Rachael Hamby, Hailing Jin*: Plant extracellular vesicles: Trojan horses of cross-kingdom warfare. FASEB BioAdvances, 2021, https://doi.org/10.1096/fba.2021-00040.

   19. Huan Wang and Hailing Jin*: Purification and Analysis of Chloroplast RNAs in Arabidopsis. RNA Abundance Analysis, Methods Mol Biol. 2021, 2170:133-141. 

   20. Qiang Cai and Hailing Jin*: Small RNA Extraction and Quantification of Isolated Fungal Cells from Plant Tissue by the Sequential Protoplastation. RNA Abundance Analysis, Methods Mol Biol. 2021;2170:219-229. 

   21. Chien Yu Huang, DongDong Niu, Gregory Kund, Mike Jones, Ute Albrecht, Lincoln Nguyen, Christine Bui, Chandrika Ramadugu, Kim D. Bowman, John Trumble, and Hailing Jin*:  Identification of citrus immune regulators involved in defense against Huanglongbing using a new functional screening system. Plant Biotechnology Journal, 2020, doi: 10.1111/pbi.13502. 

   22. Rachael Hamby, Ming Wang, Lulu Qiao, and Hailing Jin*: Synthesizing Fluorescently Labeled dsRNAs and sRNAs to Visualize Fungal RNA Uptake. RNA Tagging, Methods in Molecular Biology, 2020, 978-1-0716-0711-4, 470535_1.

   23. Qiang Cai, Baoye He, Arne Weiberg, Amy H. Buck and Hailing Jin*: Small RNAs and extracellular vesicles – new mechanisms of cross-species communication and innovative tools for disease control. PLOS Pathogens, 2019, 15(12):e1008090. doi: 10.1371/journal.ppat.1008090.

   24. Chien Yu Huang, Po Hu, Huan Wang, Rachael Hamby and Hailing Jin*: Small RNAs – Big players in plant-microbe Interactions. Cell Host & Microbe, 2019, 26(2):173-182. doi: 10.1016/j.chom.2019.07.021.

   25. Po Hu, Hongwei Zhao, Pei Zhu, Yongsheng Xiao, Weili Miao, Yinsheng Wang, Hailing Jin*:Dual regulation of Arabidopsis AGO2 by arginine methylation. Nature communications, 2019. doi: 10.1038/s41467-019-08787-w

   26. Qiang Cai, Baoye He, Hailing Jin*: A safe ride in extracellular vesicles-small RNA trafficking between plant hosts and pathogens. Current Opinion in plant biology, 2019,  52, 140-8. doi.org/10.1016/j.pbi.2019.09.001

   27. Qiang Cai, Lulu Qiao, Ming Wang, Baoye He, Feng-Mao Lin, Jared Palmquist, Hsien-Da Huang, Hailing Jin*: Plants send small RNAs in extracellular vesicles to fungal pathogen to silence virulence genes. Science, 2018, 360(6393)1126-1129. [Highlighted in "This week in Science", also see Perspective by Bart Thomma and David Cook, 2018, 360(6393) 1070-1071, selected by Faculty of 1000]

   28. Qiang Cai, Baoye He, Karl-Heinz Kogel, Hailing Jin*: Cross-kingdom RNA trafficking and environmental RNAi — nature's blueprint for modern crop protection strategies. Current Opinion in Microbiology, 2018. https://doi.org/10.1016/j.mib.2018.02.003

   29. Huan Wang, Jang-Kyun Seo, Shang Gao, Xinping Cui and Hailing Jin*: Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1. New Phytologist, 2017. doi: 10.1111/nph.14654.

   30. Ming Wang, Nicholas Thomas and Hailing Jin*: Cross-kingdom RNA trafficking and environmental RNAi for powerful innovative pre- and post-harvest plant protection. Curr Opin Plant Biol. 2017, 38:133-141. doi: 10.1016/j.pbi.2017.05.003.

   31. Ming Wang, Arne Weiberg, Exequiel Dellota Jr., Daniel Yamane, and Hailing Jin*: Botrytis small RNA Bc-siR37 suppresses plant defense genes by cross-kingdom RNAi. RNA Biol. 2017, 14(4):421-428. doi: 10.1080/15476286.2017.1291112.

   32. Ming Wang and Hailing Jin*: Spray-Induced Gene Silencing: a Powerful Innovative Strategy for Crop Protection. Trends in Microbiology. 2017, 25(1):4-6. doi: 10.1016/j.tim.2016.11.011.

   33. Ming Wang, Arne Weiberg, Feng-Mao Lin, Bart P. H. J. Thomma, Hsien-Da Huang and Hailing Jin*: "Bidirectional Cross-Kingdom Rnai and Fungal Uptake of External Rnas Confer Plant Protection." Nature Plants,  2016.doi: 10.1038/nplants.2016.151.

   34. Dongdong Niu, Yifan E. Lii, Padmanabhan Chellappan, Lei Lei, Karl Peralta, Chunhao Jiang, Jianhua Guo, Gitta Coaker and Hailing Jin*: miRNA863-3p sequentially targets negative immune regulator pseudokinases ARLPKs and positive regulator SERRATE upon bacterial infection. Nature Communications, 2016, 7: 11324.

   35. Hailing Jin, Plant Biotic Interactions. J Integr Plant Biol. 2016 Apr;58(4):282-3. doi: 10.1111/jipb.12476.

   36. Ming Wang, Arne Weiberg, Hailing Jin*. Pathogen small RNAs: a new class of effectors for pathogen attacks. Mol Plant Pathol, 2015, 16: 219-223.

   37. Arne Weiberg, Hailing Jin*. Small RNAs — the secret agents in the plant–pathogen interactions. Current Opinion in Plant Biology, 2015, 26: 87-94.

   38. Niu D, Xia J, Jiang C, Qi B, Ling X, Lin S, Zhang W, Guo J*, Jin H*, Zhao H.*: Bacillus cereus AR156 primes induced systemic resistance by suppressing miR825/825* and activating defense related genes in Arabidopsis. J Integr Plant Biol, 2015, 58: 426-439.

   39. Arne Weiberg, Marshall Bellinger, Hailing Jin*: Conversations between kingdoms: small RNAs. Current Opinion Biotechnology, 2015, 32: 207-215.

   40. Xiaoming Zhang, DongDong Niu, Alberto Carbonell, Airong Wang, Angel Lee, Vinnary Tun, Zonghua Wang, James C. Carrington, Chia-en A. Chang, Hailing Jin*: ARGONAUTE PIWI domain and microRNA duplex structure regulate small RNA sorting in Arabidopsis. Nature Communications, 2014, 5: 5468.

   41. Arne Weiberg, Ming Wang, Marschal Bellinger, and Hailing Jin*: Small RNAs: A New Paradigm in Plant-Microbe Interactions. Annual Review of Phytopathology, 2014, 52:495-516.

   42. Hailing Jin*: From genomics and epigenetics to finding hidden regulators. Genome Biology, 2014, 15:302.

   43. Yifan Lii and Hailing Jin*: Forward Chemical Screening of Small RNA Pathways. Plant Chemical Biology, Methods in Molecular Biology, 2014, 1056:95-101.

   44. Arne Weiberg, Ming Wang, Feng-Mao Lin, Hongwei Zhao, Zhihong Zhang, Isgouhi Kaloshian, Hsien-Da Huang, Hailing Jin*: Fungal small RNAs suppress plant immunity by hijacking host RNA interference pathways. Science, 2013, 342 (6154) 118-123. [Highlighted in "This week in Science", selected by Faculty of 1000. Also see Perspective by Baulcombe, 342 (6154) 45-46.]

   45. Xiaoming Zhang, Yifan Lii, Zhigang Wu, Stefano Lonardi, Jian-kang Zhu, Renyi Liu* and Hailing Jin*: Mechanisms of siRNA generation from cis-NATs in response to stresses. Molecular Plant. 2013,  6: 704-715.

   46. Zhao H., Sun R, Albrecht U, Padmanabhan C, Wang A, Coffey MD, Girke T, Wang Z, Close TJ, Roose M, Yokomi RK, Folimonova S, Vidalakis G, Rouse R, Bowman KD, Jin H*: Small RNA profiling reveals phosphorus deficiency as a contributing factor in symptom expression for citrus Huanglongbing disease. Molecular Plant. 2013, 6: 301-310.

   47. Jang-Kyun Seo, Jianguo Wu, Yi Li*, Hailing Jin*: Contribution of small RNA pathway components in plant immunity. Mol Plant Microbe Interact. 2013,  26: 617-625

   48. Zhang X, Xia J, Lii Y, Barrera-Figueroa B, Zhou X, Gao S, Lu L, Niu D, Liang W, Chen Z, Leung C, Wong T, H. Zhang, Guo J, Li Y, Liu R, Zhu JK, Zhang W*, Jin H*: Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function. Genome Biol. 2012, 13: R20.

   49. Hongwei Zhao, Yifan Lii, Pei Zhu, and Hailing Jin*: Isolation and Profiling of Protein-Associated Small RNAs. RNA Abundance Analysis, Methods in Molecular Biology, 2012, 883:165-176

   50. Xiaoming Zhang, Hongwei Zhao, Shang Gao, Wei-Chi Wang, Surekha Katiyar-Agarwal, Hsien-Da Huang, Natasha Raikhel and Hailing Jin*: Arabidopsis Argonaute 2 regulates innate immunity via miRNA393*-mediated silencing of a Golgi-localized SNARE gene MEMB12. Molecular Cell, 2011, 42: 356-366.

   51. Weixiong Zhang*, Shang Gao, Xiang Zhou, Padmanabhan Chellappan, Zheng Chen, Xuefeng, Zhou, Xiaoming Zhang, Nyssa Fromuth, Gabriela Coutino, Michael Coffey, and Hailing Jin*: Bacterial-responsive microRNAs regulate plant innate immunity by modulating plant hormone networks. Plant Molecular Biology, 2011, 75: 93-105.

   52. Shang Gao and Hailing Jin*: Host small RNAs and plant innate immunity. Non-Coding RNAs in Plants, RNA Technologies, 2011, doi.10.1007/978-3-642-19454-2_2.

   53. Hailing Jin* & Jian-Kang Zhu: A viral suppressor protein inhibits host RNA silencing by hooking up with Argonautes. Genes & Development, 2010, 24: 853-856.

   54. Zhang W*, Gao S, Zhou X, Xia J, Chellappan P, Zhou X, Zhang X, Jin H.*: Multiple distinct small RNAs originated from the same microRNA precursors. Genome Biol. 2010, 11: R81.

   55. Padmanabhan Chellappan, Jing Xia, Xuefeng Zhou, Shang Gao, Xiaoming Zhang, Gabriela Coutino, Franck Vazquez, Weixiong Zhang and Hailing Jin*: siRNAs from miRNA sites mediate DNA methylation of target genes. Nucleic Acid Research, 2010, 38: 6883-94.

   56. Hailing Jin* & Jian-Kang Zhu*: How many ways are there to generate small RNAs? Molecular Cell, 2010, 38: 775-777.

   57. Surekha Katiyar-Agarwal and Hailing Jin*: Role of Small RNAs in host-microbe interactions. Annu. Rev. Phytopathol. 2010, 48: 225-246.

   58. Zhihuan Gao, Hai-Liang Liu, Lucia Daxinger, Olga Pontes, Xinjian He, Weiqiang Qian, Mingtang Xie, Zdravko J. Lorkovic, Shoudong Zhang, Dominique Pontier, Thierry Lagrange, Steven E. Jacobsen, Hailing Jin, Antonius J.M. Matzke, Marjori Matzke, Craig S. Pikaard, and Jian-Kang Zhu: An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation. Nature, 2010, 465: 106-110.

   59. Padmanabhan Chellappan, Xiaoming Zhang and Hailing Jin*: Host small RNAs are big contributors in plant innate immunity. Current Opinion in Plant Biology, 2009, 12: 465-72. 

   60. He XJ, Hsu YF, Zhu S, Wierzbicki AT, Pontes O, Pikaard CS, Liu HL, Wang CS, Jin H, Zhu JK: An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein. Cell, 2009,137: 498-508.

   61. Padmanabhan Chellappan and Hailing Jin*: Discovery of plant microRNAs and short-interfering RNAs by deep parallel sequencing. Methods in Molecular Biology, 2009, 495, 121-132.

   62. Hailing Jin* (co-corresponding author), Vladimir Vacic, Thomas Girke, Stefano Lonardi and Jian-Kang Zhu*: Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis. BMC Molecular Biology, 2008, 9:6.

   63. Hailing Jin*: Endogenous Small RNAs And Antibacterial Immunity in Plants. FEBS Letters, 2008, 582, 2679-84.

   64. Wen-Xue Li, Youko Oono, Jianhua Zhu, Xin-Jian He, Jian-Min Wu, Iida Kei, Xiao-Yan Lu, Xinping Cui, Hailing Jin and Jian-Kang Zhu: Transcriptional and posttranscriptional regulation of a transcription factor important for drought resistance in Arabidopsis. The Plant Cell, 2008, 20, 2238-51.

   65. Surekha Katiyar-Agarwal, Shang Gao, Adam Vivian-Smith and Hailing Jin*: A novel class of bacteria-induced small RNAs in Arabidopsis. Genes & Development 2007, 21, 3123-3134.

   66. Surekha Katiyar-Agarwal and Hailing Jin*: Discovery of Pathogen-Regulated Small RNAs in Plants. Methods in Enzymology, 2007, 427, 215-227.

   67. Katiyar-Agarwal S, Morgan R, Dahlbeck D, Borsani O, Villegas A Jr, Zhu JK, Staskawicz B*, Jin H.*: A pathogen-inducible endogenous siRNA in plant immunity. Proc. Natl. Acad. Sci. USA. 2006,103, 1802-18007.

   68. Hailing Jin*, Songtao Li and Andy Villegas Jr.: Down Regulation of 26S Proteasome Subunit RPN9 Inhibits Viral Systemic Transport and Alters Plant Vascular Development. Plant Physiology, 2006, 142, 651-661.

   69. Jin, H., Y. Liu, K.-Y. Yang, C.-Y. Kim, B..Baker, and S. Zhang: Function of a mitogen-activated protein kinase pathway in N gene-mediated resistance in tobacco. The Plant Journal, 2003, 33, 719-731.

   70. Jin, H., M.J. Axtell, D. Dahlbeck, O. Ekwenna, S. Zhang, B. Staskawicz, and B. Baker: NPK1, an MEKK1-like mitogen-activated protein kinase kinase kinase, regulates innate immunity and development in plants. Developmental Cell, 2002, 3, 291-297.

   71. Jin, H., E. Cominelli, P. Bailey, A. Parr, F. Mehrtens, C. Tonelli, B. Weisshaar, and C. Martin: Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis.  EMBO Journal, 2000, 19, 6150-6161.

   72. Meissner, R., H. Jin (co-first author), E. Cominelli, M. Denekamp, et.al.: Function search in a large transcription factor gene family in Arabidopsis: Assessing the potential of reverse genetics to identify insertional mutants in R2R3 MYB genes. Plant Cell 1999, 11, 1827-1840.

   73. Jin, H. and C. Martin. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol Biol, 1999, 41, 577-585.

Collaborative  Publications:                                                                                                                      

1. 74. Rodrigues ML, Janbon G, O'Connell RJ, Chu TT, May RC, Jin H, Reis FCG, Alves LR, Puccia R, Fill TP, Rizzo J, Zamith-Miranda D, Miranda K, Gonçalves T, Ene IV, Kabani M, Anderson M, Gow NAR, Andes DR, Casadevall A, Nosanchuk JD, Nimrichter L.: Characterizing extracellular vesicles of human fungal pathogens. Nature Microbiology 2025, 10(4):825-835. doi: 10.1038/s41564-025-01962-4. 

   75. Case NT, Gurr SJ, Fisher MC, Blehert DS, Boone C, Casadevall A, Chowdhary A, Cuomo CA, Currie CR, Denning DW, Ene IV, Fritz-Laylin LK, Gerstein AC, Gow NAR, Gusa A, Iliev ID, James TY, Jin H, Kahmann R, Klein BS, Kronstad JW, Ost KS, Peay KG, Shapiro RS, Sheppard DC, Shlezinger N, Stajich JE, Stukenbrock EH, Taylor JW, Wright GD, Cowen LE, Heitman J, Segre JA.: Fungal impacts on Earth's ecosystems. Nature 2025 Feb;638(8049):49-57. doi: 10.1038/s41586-024-08419-4.

   76. Huang Y, Li W, Liu T, Lin X, Xia Y, Zhu W,  Jin H, and Cai Q. (2025). Rice extracellular vesicles send defense proteins into fungus Rhizoctonia solanito reduce disease. Development Cell. doi.org/10.1016/j.devcel.2024.12.020.

   77. Silvestri A, Ledford WC, Fiorilli V, Votta C, Scerna A, Tucconi J, Mocchetti A, Grasso G, Balestrini R, Jin H, Rubio-Somoza I, Lanfranco L. (2024). A fungal sRNA silences a host plant transcription factor to promote arbuscular mycorrhizal symbiosis. New Phytologist.  doi.org/10.1111/nph.20273

   78. Burch-Smith TM, Wang A, Park E, Jin H, & Wang D. (2023). Focus on the Plant Endomembrane System in Molecular Plant-Microbe Interactions. Molecular Plant-Microbe Interactions, 36(4), 199–200. https://doi.org/10.1094/mpmi-03-23-0026-fi.

   79. Manavella PA, Herz MAG, Kornblihtt AR, Sorenson R, Sieburth LE, Nakaminami K, Seki M, Ding Y, Sun Q, Kang H, Ariel FD, Crespi M, Giudicatti A, Cai Q, Hailing Jin, Feng X, Qi Y, Pikaard CS.: Beyond transcription: compelling open questions in plant RNA biology. Plant Cell, 2022, doi: 10.1093/plcell/koac346.

   80. Case NT, Berman J, Blehert DS, Cramer RA, Cuomo C, Currie CR, Ene IV, Fisher MC, Fritz-Laylin LK, Gerstein AC, Glass NL, Gow NAR, Gurr SJ, Hittinger CT, Hohl TM, Iliev ID, James TY, Jin H, Klein BS, Kronstad JW, Lorch JM, McGovern V, Mitchell AP, Segre JA, Shapiro RS, Sheppard DC, Sil A, Stajich JE, Stukenbrock EE, Taylor JW, Thompson D, Wright GD, Heitman J, Cowen LE.: The future of fungi: threats and opportunities. G3 (Bethesda). 2022, 12(11):jkac224. doi: 10.1093/g3journal/jkac224.

   81. Rebolledo-Prudencio OG, Estrada-Rivera M, Dautt-Castro M, Arteaga-Vazquez MA, Arenas-Huertero C, Rosendo-Vargas MM, Hailing Jin, Casas-Flores S.: The small RNA-mediated gene silencing machinery is required in Arabidopsis for stimulation of growth, systemic disease resistance, and suppression of the nitrile-specifier gene NSP4 by Trichoderma atroviride. Plant J. 2022, doi: 10.1111/tpj.15599.

   82. Sabbadini S, Capriotti, L, Jin H, Ricci A, Giovanetti, G, Mezzetti B.: RNAi-based approaches to induce resistance against grey mould disease in strawberry. SHS Acta Horticulturae. 2021, 1309, 209-216.

   83. Lulu Qiao, Liyu Zheng,Cong Seng,Hongwei Zhao, Hailing Jin, Dongdong Niu*: Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis. The Plant J, 2020. doi.org/10.1111/tpj.14677. 

   84. Fisher MC, Gurr SJ, Cuomo CA, Blehert DS, Jin H, Stukenbrock EH, Stajich JE, Kahmann R, Boone C, Denning DW, Gow NA, Klein BS, Kronstad JW14, Sheppard DC, Taylor JW, Wright GD, Heitman J, Casadevall A, Cowen LE. Threats Posed by the Fungal Kingdom to Humans, Wildlife, and Agriculture. mBio. 2020, 5;11(3): e00449-20.  

   85. Jiang C, Fan Z, Li Z, Niu D, Li Y, Zheng M, Wang Q, Jin H, Guo J.: Bacillus cereus AR156 triggers induced systemic resistance against Pseudomonas syringae pv. tomato DC3000 by suppressing miR472 and activating CNLs-mediated basal immunity in Arabidopsis. Mol Plant Pathol. 2020,1(6):854-870.

   86. Lulu Qiao, Hongwei Zhao, Hailing Jin, Dongdong Niu*: Expression of rice siR109944 in Arabidopsis affects plant immunity to multiple fungal pathogens. Plant Signaling & Behavior, 2020,  4(15). doi.org/10.1080/15592324.2020.1744347

   87. Mélanie Ormancey, Aurélie Le Ru, Carine Duboé, Hailing Jin, Patrice Thuleau, Serge Plaza, Jean-Philippe Combier*:Internalization of miPEP165a into Arabidopsis Roots Depends on both Passive Diffusion and Endocytosis-Associated Processes. Int. J. Mol. Sci, 2020,21(7), 2266; https://doi.org/10.3390/ijms21072266

   88. Hailing Jin, Melissa Mitchum, Ralph Panstruga, Julie Stone:Focus Issue Editorial: Biotic Stress. Plant Physiology, 2019, 179(4):1193-95

   89. Hua Xiao, Patrick KT Shiu, Marta Gabryleska, Simon J Conn, Abhishek Dey, Kausik Chakrabarti, Manuel Regouc, Martin Pichler, Ulf Andersson Vang Ørom, Gaetano Santulli, Satoshi Nishiwada, Ajay Goel, Vaishnavi Nagarajan, Lisa Timmons, Suresh K Alahari, Noemi Laprovitera, Manuela Ferracin, Po Hu, Hailing Jin*:The Non-Coding RNA Journal Club: Highlights on Recent Papers—7. Non-Coding RNA, 2019, 5(2),40; https://doi.org/10.3390/ncrna5020040.

   90. Xin Zhang, Yalin Bao, Deqi Shan, Zhihui Wang, Xiaoning Song, Zhaoyun Wang, Jiansheng Wang, Liqiang He, Liang Wu, Zhengguang Zhang, Dongdong Niu, Hailing Jin, Hongwei Zhao*: Magnaporthe oryzae Induces the Expression of a MicroRNA to Suppress the Immune Response in Rice. Plant Physiology, 2018. DOI: https://doi.org/10.1104/pp.17.01665

   91. Zhaoyun Wang, Yeqiang Xia, Siyuan Lin, Yanru Wang, Baohuan Guo, Xiaoning Song, Shaochen Ding, Liyu Zheng, Ruiying Feng, Shulin Chen, Yalin Bao, Cong Sheng, Xin Zhang, Jianguo Wu, Dongdong Niu, Hailing Jin, Hongwei Zhao*: Osa‐miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae. The Plant Journal, 2018. DOI:https://doi.org/10.1111/tpj.13972

   92. Dong OX, Meteignier LV, Plourde MB, Ahmed B, Wang M, Jensen C, Jin H, Moffett P, Li X, Germain H.: Arabidopsis TAF15b Localizes to RNA Processing Bodies and Contributes to snc1-Mediated Autoimmunity. Mol Plant Microbe Interact, 2016, 29: 247-257.

   93. Chen Z, Lai TC, Jan YH, Lin FM, Wang WC, Xiao H, Wang YT, Sun W, Cui X, Li YS, Fang T, Zhao H, Padmanabhan C, Sun R, Wang DL, Jin H, Chau GY, Huang HD, Hsiao M, Shyy JY: Hypoxia-responsive miRNAs target argonaute 1 to promote angiogenesis. J Clin Invest. 2013, 123:1057-67.

   94. Li W, Cui X, Meng Z, Huang X, Xie Q, Wu H, Jin H, Zhang D, Liang W: Transcriptional regulation of Arabidopsis MIR168a and ARGONAUTE1 homeostasis in ABA and abiotic stress responses. Plant Physiol. 2012, 158:1279-92.

   95. Barrera-Figueroa BE, Gao L, Wu Z, Zhou X, Zhu J, Jin H, Liu R, Zhu JK: High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice. BMC Plant Biol. 2012, 12:132.

   96. Panagiotis F. Sarris, Shang Gao, Konstantinos Karademiris, Hailing Jin, Kriton Kalantidis and Nickolas J. Panopoulos: Phytobacterial Type III Effectors HopX1, HopAB1 and HopF2 Enhance Sense-Post Transcriptional Gene Silencing Independently of Plant R Gene-Effector Recognition. Mol Plant Microbe Interact. 2012, 24: 907-917.

   97. Niu DD, Liu HX, Jiang CH, Wang YP, Wang QY, Jin H, Guo J.: The Plant Growth-Promoting Rhizobacterium Bacillus cereus AR156 Induces Systemic Resistance in Arabidopsis thaliana by Simultaneously Activating Salicylate- and Jasmonate/Ethylene-dependent Signaling Pathways. Mol Plant Microbe Interact. 2011, 24: 533-42.

   98. Agee AE, Surpin M, Sohn EJ, Girke T, Rosado A, Kram BW, Carter C, Wentzell AM, Kliebenstein DJ, Jin HC, Park OK, Jin H, Hicks GR, Raikhel NV: MODIFIED VACUOLE PHENOTYPE1 is an Arabidopsis myrosinase-associated protein involved in endomembrane protein trafficking. Plant Physiol., 2010, 152: 120-32.

   99. Xuefeng Zhou, Ramanjulu Sunkar, Hailing Jin, Jian-Kang Zhu and Weixiong Zhang: Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa. Genome Research, 2009, 19, 70-78.

   100. Iida K, Jin H, Zhu, JK: Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana. BMC Genomics, 2009, 10:155.

   101. Ni Li, Carolyn Jablonowski, Hailing Jin and Wenwan Zhong: Stand-Alone Rolling Circle Amplification Combined with Capillary Electrophoresis for Specific Detection of Small RNA. Analytical Chemistry 2009. 81: 4906-13.

   102. Atsunari Tsuchisaka, Guixia Yu, Hailing Jin, Jose M. Alonso, Joseph R. Ecker, Xiaoming Zhang, Shang Gao and Athanasios Theologis: A Combinatorial Interplay Among the 1-Aminocyclopropane-1-carboxylate Isoforms Regulates Ethylene Biosynthesis in Arabidopsis thaliana. Genetics, 2009, 183: 979-1003. 

   103. Vladimir Vacic, Hailing Jin, Jian-Kang Zhu and Stefano Lonard: A probabilistic method for small RNA flowgram matching. Pacific Symposium on Biocomputing, 2008, 13, 75-86

   104. Kim Baumann, Maria Perez-Rodriguez, Desmond Bradley, Julien Venail, Paul Bailey, Hailing Jin, Ronald Koes, Keith Roberts and Cathie Martin: Control of cell and petal morphogenesis by R2R3 MYB transcription factors. Development 2007, 134, 1691-1701.

   105. Gianinna Brigneti, Ana M. Martín-Hernández, Hailing Jin, Judy Chen, David C. Baulcombe, Barbara Baker and Jonathan D.G. Jones: Virus-Induced Gene Silencing in Solanum Species. The Plant Journal. 2004, 39, 264-272.

   106. Rojo E, M.R., Carter C, Zouhar J, Pan S, Plotnikova J, Jin H, Paneque M, Sanchez-Serrano JJ, Baker B, Ausubel FM, Raikhel NV: VPEgamma Exhibits a Caspase-like Activity that Contributes to Defense against Pathogens. Current Biology, 2004, 14, 1897-906.

   107. Ronning, C.M., S. Stegalkina, R. Ascenzi, O. Bougri, A. Hart, T. Utterbach, S. Vanaken, S.,  Riedmuller, J. White, J. Cho, G. Pertea, Y. Lee, S. Karamycheva, R. Sultana, J. Tsai, J. Quackenbush, K. Myers, S. Restrepo, C. Smart, W. Fry, R. van der Hoeven, S. Tanksley, P. Zhang, H. Jin, M. Yamamoto, B. Baker, and C.R. Buell: Comparative Analyses of Potato Expressed Sequence Tag Libraries. Plant Physiology 2003, 131, 419-429.

   108. Liu, Y., H. Jin, K.-Y. Yang , C.-Y. Kim, B. Baker, and S. Zhang: Interaction between two mitogen-activated protein kinases during tobacco defense signaling. The Plant Journal 2003, 34, 149-160.

   109. Cathie Martin, Kiran Bhatt, Kim Baumann, Hailing Jin, Sabine Zachgo, Keith Roberts, Zsuzsanna Schwarz-Sommer, Beverley Glover and Maria Perez-Rodrigues: The mechanics of cell fate determination in petals. Philos Trans R Soc Lond B Biol Sci. 2002, 357, 809-813.

   110. Cathie Martin, Hailing Jin, Kathy Schwinn: Chapter Eight Mechanisms and applications of transcriptional control of phenylpropanoid metabolism. Recent Advances in Phytochemistry, 2001, 35:155-169.

   111. Kranzl, H.D., M. Denekamp, R. G., H. Jin, A. Leyva, R. Meissner, K. Petroni, A. Urzainqui,  M.Bevan, C. Martin, S. Smeekens, C. Tonelli, J. Paz-Ares, B. Weisshaar.  Towards functional characterisation of the members of the R2R3- MYB gene family from Arabidopsis thaliana.  The Plant Journal 1998, 16, 263-276.

   112. Song, R.-T., J. Li, H. Jin, Q.-Q. Zhang, and Z.-K. Xu. Influence of substrate and ribozyme sequences on the functions of ribozyme.  ACTA Biochimica et Biophysica Sinica 1997, 29, 61-67.

   113. Jin, H., Q.-Q. Zhang, R.-T. Shong, and Z.-K. Xu. Complementary expression of two defective TMV particles in tobacco.  Chinese Journal of Biochemistry and Biophysics 1996, 29(2): 131-139.

   114. Li, J., H. Jin, Q.-Q. Zhang, R.-T. Song, and Z.-K. Xu. Di-component ribozyme can function as two independent ribozymes on tobacco mosaic virus RNA. Chinese Journal of Biotechnology 1995, 11, 20-26.  

   115. Jin, H., H.-S. Shang, Q.-Q. Zhang, and Z.K. Xu. Cloning and expression of an antifreeze peptide gene of Winter Flounder in E.coli. ACTA Biologiae Experimentalis Sinica 1995, 28, 77-83.

Books Edited:

1. Hailing Jin & Isgouhi Kaloshian (Co-editors): RNA Abundance Analysis, the 2nd Edition for the "Methods in Molecular Biology" book series, published by Humana Press, USA, 2020.

2. Olga Pontes and Hailing Jin (Co-editors): Nuclear Functions in Plant Transcription and Signaling. Published by Springer, ISBN 978-1-4939-2385-4, 275 P., 18 Illus. in color., 2015.

3. Hailing Jin & Walter Gassmann (Co-editors): RNA Abundance Analysis, a new volume for the "Methods in Molecular Biology" book series, published by Humana Press, USA. 2012. 

Special Issue Edited:

1. Focus issue on the Plant Endomembrane System in Molecular Plant-Microbe Interactions. Edited by Burch-Smith, T. M., Wang, A., Park, E., Jin, H., & Wang, D. Molecular Plant-Microbe Interactions, 2023. https://doi.org/10.1094/mpmi-03-23-0026-fi.

2. Special issue on Research Topic: RNAi based pesticides. Edited by Hailing Jin, Azzeddine Ammour, Padubidri Shivaprasad, Andras Szekacs, and Michael Mendelsohn. Front. Plant Sci., 2020. https://www.frontiersin.org/research-topics/11066/rnai-based-pesticides. 

3. Focus Issue on Biotic Stress. Plant Physiology, April, 2019. Edited by Hailing Jin, Ralph Panstruga, Julie Stone and Melissa Goellner Mitchum.

4. Special Issue of Plant Biotic Interactions. Journal of Integrative Plant Biology. 2016, 58(4). Edited by Hailing Jin.

Book Chapters:

1. Chellappan Padmanabhan and Hailing Jin: Host endogenous small RNAs regulate plant innate immunity. Biology of Molecular Plant-Microbe Interactions, Volume 7. 2010.

2. Hailing Jin: Viral systemic movement and plant vascular development. Biology of Plant-Microbe Interactions, Volume 5. Published by International Society for Molecular-Microbe Interactions. St. Paul, Minnesota, USA. 2006, p423-426.

3. Cathie Martin, Hailing Jin, Kathy Schwinn: Chapter Eight: Mechanisms and applications of transcriptional control of phenylpropanoid metabolism. Recent Advances in Phytochemistry, 2001, 35:155-169.