Publications

My publications are listed on Google Scholar, Publons and ORCID 

Publications in SCI journals

• Fatemeh Kazemisabet, Arash Bahrami, Rikhia Ghosh, Bartosz Różycki, Amir H. Bahrami. Molecular mechanisms and energetics of lipid droplet formation and directional budding. Soft Matter 20: 909-922 (2024).

• Andrea Eisenreichova, Jana Humpolickova, Bartosz Różycki, Evzen Boura, Alena Koukalova. Effects of biophysical membrane properties on recognition of phosphatidylserine, or phosphatidylinositol 4-phosphate by lipid biosensors LactC2, or P4M. Biochimie 215: 42-49 (2023).

• Long Li, Chen Gui, Jinglei Hu, Bartosz Różycki*. Membrane-mediated cooperative interactions of CD47 and SIRPα. Membranes 13: 871 (2023). (*corresponding author)

• Andrea Eisenreichova, Martin Klima, Midhun Mohan Anila, Alena Koukalova, Jana Humpolickova, Bartosz Różycki, Evzen Boura. Crystal structure of the ORP8 lipid transport ORD domain: Model of lipid transport. Cells 12: 1974 (2023). 

• Reinhard Lipowsky, Vahid Satarifard, Aparna Sreekumari, Miftakh Zamaletdinov, Bartosz Różycki, Markus Miettinen, Andrea Grafmüller. Leaflet tensions control the spatio-temporal remodeling of lipid bilayers and nanovesicles. Biomolecules 13: 926 (2023).

• Midhun Mohan Anila, Rikhia Ghosh, Bartosz Różycki*. Membrane curvature sensing by model biomolecular condensates. Soft Matter 19: 3723-3732 (2023). (*corresponding author)

• Johannes Pettmann, Lama Awada, Bartosz Różycki, Anna Huhn, Sara Faour, Mikhail Kutuzov, Laurent Limozin, Thomas R. Weikl, P. Anton van der Merwe, Philippe Robert, Omer Dushek. Mechanical forces impair antigen discrimination by reducing differences in T-cell receptor/peptide–MHC off-rates. EMBO J. 42: e111841 (2023).

• Long Li, Jinglei Hu*, Bartosz Różycki*, Jing Ji*, Fan Song. Interplay of receptor-ligand binding and lipid domain formation during cell adhesion. Front. Mol. Biosci. 9: 1019477 (2022). (*corresponding authors)

• Bartosz Różycki*, Evzen Boura*. Conformational ensemble of the full-length SARS-CoV-2 nucleocapsid (N) protein based on molecular simulations and SAXS data. Biophys. Chem. 288: 106843 (2022). (*corresponding authors)

• Jonathan Dorival, Sarah Morais, Aurore Labourel, Bartosz Różycki, Pierre-Andre Cazade, Jerome Dabin, Eva Setter-Lamed, Itzhak Mizrahi, Damien Thompson, Aurelien Thureau, Edward A Bayer, Mirjam Czjzek. Mapping the deformability of natural and designed cellulosomes in solution. Biotechnol. Biofuels Bioprod. 15: 68 (2022).

• Prithvi R. Pandey, Bartosz Różycki, Reinhard Lipowsky, Thomas R. Weikl. Structural variability and concerted motions of the T cell teceptor - CD3 complex. eLife 10: e67195 (2021).

• Andrea Eisenreichova, Bartosz Różycki, Evzen Boura, Jana Humpolickova. Osh6 revisited - Control of PS transport by the concerted actions of PI4P and Sac1 phosphatase. Front. Mol. Biosci. 8: 747601 (2021).

• Bartosz Różycki, Thomas R. Weikl. Cooperative stabilization of close-contact zones leads to sensitivity and selectivity in T-cell recognition. Cells 10: 1023 (2021).

• Long Li, Jinglei Hu*, Bartosz Różycki*, Xiaohuan Wang, Helong Wu, Fan Song. Influence of lipid rafts on pattern formation during T-cell adhesion. New J. Phys. 23: 043052 (2021). (*corresponding authors)

• Andrés Manuel Vera, Albert Galera-Prat, Michał Wojciechowski, Bartosz Różycki, Douglas V. Laurents, Mariano Carrión-Vázquez, Marek Cieplak, Philip Tinnefeld. Cohesin-dockerin code in cellulosomal dual binding modes and its allosteric regulation by proline isomerization. Structure 29: 587-597 (2021).

• Long Li, Jinglei Hu*, Xinghua Shi, Bartosz Różycki*, Fan Song*. Interplay between cooperativity of intercellular receptor-ligand binding and coalescence of nanoscale lipid clusters in adhering membranes. Soft Matter 17: 1912-1920 (2021). (*corresponding authors)

• Alessandro Sicorello, Bartosz Różycki, Petr V. Konarev, Dmitri I. Svergun, Annalisa Pastore. Capturing the conformational ensemble of the mixed folded polyglutamine protein ataxin-3. Structure 29: 70-81 (2021).

• Łukasz Mioduszewski, Bartosz Różycki, Marek Cieplak. Pseudo-improper-dihedral model for intrinsically disordered proteins. J. Chem. Theory Comput. 16: 4726-4733 (2020).

• Long Li, Jinglei Hu*, Bartosz Różycki*, Fan Song*. Intercellular receptor-ligand binding and thermal fluctuations facilitate receptor aggregation in adhering membranes. Nano Lett. 20: 722-728 (2020). (*corresponding authors)

• Dominika Chalupska, Bartosz Różycki, Martin Klima, Evzen Boura. Structural insights into Acyl-coenzyme A binding domain containing 3 (ACBD3) protein hijacking by picornaviruses. Prot. Sci. 28: 2073-2079 (2019).

• Vladimira Horova, Heyrhyoung Lyoo, Bartosz Różycki, Dominika Chalupska, Miroslav Smola, Jana Humpolickova, Jeroen R. P. M. Strating, Frank J. M. van Kuppeveld, Evzen Boura, Martin Klima. Convergent evolution in the mechanisms of ACBD3 recruitment to picornavirus replication sites. PLoS Pathog 15: e1007962 (2019).

• Jan Steinkühler, Bartosz Różycki, Cory Alvey, Reinhard Lipowsky, Thomas R. Weikl, Rumiana Dimova, Dennis E. Discher. Membrane fluctuations and acidosis regulate cooperative binding of ‘marker of self’ CD47 with the macrophage checkpoint receptor SIRPα. J. Cell Sci. 132: 216770 (2019).

• Dominika Chalupska, Bartosz Różycki, Jana Humpolickova, Lenka Faltova, Martin Klima, Evzen Boura. Phosphatidylinositol 4-kinase III β (PI4KB) forms highly flexible heterocomplexes that include ACBD3, 14-3-3, and Rab11 proteins. Sci. Rep. 9: 567 (2019).

• Michał Wojciechowski, Bartosz Różycki, Pham Dinh Quoc Huy, Mai Suan Li, Edward Bayer, Marek Cieplak. Dual binding in cohesin-dockerin complexes: the energy landscape and the role of short, terminal segments of the dockerin module. Sci. Rep. 8: 5051 (2018).

• Dominika Chalupska, Andrea Eisenreichova, Bartosz Różycki, Lenka Rezabkova, Jana Humpolickova, Martin Klima, Evzen Boura. Structural analysis of phosphatidylinositol 4-kinase III β (PI4KB) - 14-3-3 protein complex reveals internal flexibility and explains 14-3-3 mediated protection from degradation in vitro. J. Struct. Biol. 200: 36-44 (2017). 

• Bartosz Różycki, Pierre Andre Cazade, Shane O'Mahony, Damien Thompson, Marek Cieplak. The length but not the sequence of peptide linker modules exerts the primary influence on the conformations of protein domains in cellulosome multi-enzyme complexes. Phys. Chem. Chem. Phys. 19: 21414-21425 (2017). 

• Martin Klima, Dominika Chalupska, Bartosz Różycki, Jana Humpolickova, Lenka Rezabkova, Jan Silhan, Adriana Baumlova, Anna Dubankova, Evzen Boura. Kobuviral non-structural 3A proteins act as molecular harnesses to hijack the host ACBD3 protein. Structure 25: 219-230 (2017). 

• Bartosz Różycki*, Marek Cieplak. Stiffness of the C-terminal disordered linker affects the geometry of the active site in endoglucanase Cel8A. Mol. BioSyst. 12: 3589-3599 (2016). (*corresponding author)

• Bartosz Różycki, Reinhard Lipowsky. Membrane curvature generated by asymmetric depletion layers of ions, small molecules, and nanoparticles. J. Chem. Phys. 145: 074117 (2016). 

• Kecheng Yang, Bartosz Różycki, Fengchao Cui, Ce Shi, Wenduo Chen, Yunqi Li. Sampling enrichment toward target structures using hybrid Molecular Dynamics-Monte Carlo simulations. PLoS ONE 11: e0156043 (2016). 

• Bartosz Różycki*, Marek Cieplak, Mirjam Czjzek. Large conformational fluctuations of the multi-domain xylanase Z of Clostridium thermocellum. J. Struct. Biol. 191: 68-75 (2015). (*corresponding author)

• Bartosz Różycki, Reinhard Lipowsky. Spontaneous curvature of bilayer membranes from molecular simulations: Asymmetric lipid densities and asymmetric adsorption. J. Chem. Phys. 142: 054101 (2015). 

• Bartosz Różycki*, Marek Cieplak. Citrate synthase proteins in extremophilic organisms: Studies within a structure-based model. J. Chem. Phys. 141: 235102 (2014). (*corresponding author)

• Bartosz Różycki*, Evzen Boura. Large, dynamic, multi-protein complexes: A challenge for structural biology. J. Phys.: Condens. Matter 26: 463103 (2014). (*corresponding author)

• Bartosz Różycki*, Lukasz Mioduszewski, Marek Cieplak. Unbinding and unfolding of adhesion protein complexes through stretching: Interplay between shear and tensile mechanical clamps. Proteins: Struct. Funct. Bioinf. 82: 3144-3153 (2014). (*corresponding author)

• Adriana Baumlova, Dominika Chalupska, Bartosz Różycki, Marko Jovic, Eva Wisniewski, Martin Klima, Anna Dubankova, Daniel P Kloer, Radim Nencka, Tamas Balla, Evzen Boura. The crystal structure of the phosphatidylinositol 4‐kinase II-α. EMBO Reports 15: 1085-1092 (2014). 

• Bartosz Różycki, Evzen Boura, James H. Hurley, Gerhard Hummer. Membrane-elasticity model of coatless vesicle budding induced by ESCRT complexes. PLoS Comp. Biol. 8: e1002736 (2012).

• Evzen Boura*, Bartosz Różycki*, Hoi Sung Chung, Dawn Z. Herrick, Bertram Canagarajah, David S. Cafiso, William A. Eaton, Gerhard Hummer, James H. Hurley. Solution structure of the ESCRT-I and -II supercomplex: implications for membrane budding and scission. Structure 20: 874-886 (2012). (*equal contributions)

• Dana M. Francis, Bartosz Różycki, Dorothy Koveal, Gerhard Hummer, Wolfgang Peti, Rebecca Page. Structural basis of p38-α regulation and specificity by hematopoietic tyrosine phosphatase. Nat. Chem. Biol. 7: 916-924 (2011). 

• Dana M. Francis*, Bartosz Różycki*, Antoni Tortajada, Gerhard Hummer, Wolfgang Peti, Rebecca Page. Resting and active states of the ERK2:HePTP complex. J. Am. Chem. Soc. 133: 17138-17141 (2011). (*equal contributions)

• Heinrich Krobath, Bartosz Różycki, Reinhard Lipowsky, Thomas R. Weikl. Line tension and stability of domains in cell-adhesion zones mediated by long and short receptor-ligand complexes. PLoS ONE 6: e23284 (2011). 

• Evzen Boura, Bartosz Różycki, Dawn Z. Herrick, Hoi Sung Chung, Jaroslav Vecer, William A. Eaton, David S. Cafiso, Gerhard Hummer, James H. Hurley. Solution structure of the ESCRT-I complex by small angle X-ray scattering, EPR, and FRET spectroscopy. Proc. Natl. Acad. Sci. USA 108: 9437-9442 (2011). 

• Bartosz Różycki, Young C. Kim, Gerhard Hummer. SAXS ensemble refinement of ESCRT-III CHMP3 conformational transitions. Structure 19: 109-116 (2011).

• Thomas A. Leonard, Bartosz Różycki, Layla F. Saidi, Gerhard Hummer, James H. Hurley. Crystal structure and allosteric activation of protein kinase C β-II. Cell 144: 55-66 (2011).

• James H. Hurley, Evzen Boura, Lars-Anders Carlson, Bartosz Różycki. Membrane budding. Cell 143: 875-887 (2010).

• Bartosz Różycki, Reinhard Lipowsky, Thomas R. Weikl. Segregation of receptor-ligand complexes in cell adhesion zones: phase diagrams and the role of thermal membrane roughness. New J. Phys. 12: 095003 (2010). 

• Bartosz Różycki, Reinhard Lipowsky, Thomas R. Weikl. Adhesion of surfaces via particle adsorption: exact results for a lattice of fluid columns. J. Stat. Mech. P11006 (2009).

• Thomas R. Weikl, Mesfin Asfaw, Heinrich Krobath, Bartosz Różycki, Reinhard Lipowsky. Adhesion of membranes via receptor-ligand complexes: Domain formation, binding cooperativity, and active processes. Soft Matter 5: 3213-3224 (2009).

• Heinrich Krobath, Bartosz Różycki, Reinhard Lipowsky, Thomas R. Weikl. Binding cooperativity of membrane adhesion receptors. Soft Matter 5: 3354-3361 (2009).

• Bartosz Różycki, Reinhard Lipowsky, Thomas R. Weikl. Effective surface interactions mediated by adhesive particles. EPL 84: 26004 (2008). 

• Bartosz Różycki, Thomas R. Weikl, Reinhard Lipowsky. Stable patterns of membrane domains at corrugated substrates. Phys. Rev. Lett. 100: 098103 (2008). 

• Bartosz Różycki, Thomas R. Weikl, Reinhard Lipowsky. Stochastic resonance for adhesion of membranes with active stickers. Eur. Phys. J. E 22: 97-106 (2007).

• Mesfin Asfaw, Bartosz Różycki, Reinhard Lipowsky, Thomas R. Weikl. Membrane adhesion via competing receptor/ligand bonds. Europhys. Lett. 76: 703-706 (2006). 

• Bartosz Różycki, Thomas R. Weikl, Reinhard Lipowsky. Adhesion of membranes via switchable molecules. Phys. Rev. E 73: 061908 (2006). 

• Bartosz Różycki, Reinhard Lipowsky, Thomas R. Weikl. Adhesion of membranes with active stickers. Phys. Rev. Lett. 96: 048101 (2006). 

• Bartosz Różycki, Marek Napiorkowski. Phase transitions in multicomponent string model. Europhys. Lett. 66: 35-40 (2004). 

• Bartosz Różycki, Marek Napiorkowski. The RSOS model for a slit with different walls. J. Phys. A: Math. Gen. 36: 4551-4559 (2003). 

Book chapters

• Long Li, Jie Gao, Łukasz Milewski, Jinglei Hu, Bartosz Różycki. Lattice-based mesoscale simulations and mean-field theory of cell membrane adhesion. In: "Biophysical Approaches for the Study of Membrane Structure", Markus Deserno and Tobias Baumgart (eds), Elsevier. Methods in Enzymology 702 (2024).

• Prithvi R. Pandey, Bartosz Różycki, Thomas R. Weikl. Molecular Dynamics Simulations of Immune Receptors and Ligands. In: "The Immune Synapse", Cosima T. Baldari and Michael L. Dustin (eds), Springer, New York, NY, USA. Methods in Molecular Biology 2654: 51-59 (2023). 

• Jürgen Köfinger, Bartosz Różycki, Gerhard Hummer. Inferring structural ensembles of flexible and dynamic macromolecules using Bayesian, maximum entropy, and minimal-ensemble refinement methods. In: "Biomolecular Simulations: Methods and Protocols", Massimiliano Bonomi and Carlo Camilloni (eds), Springer, New York, NY, USA. Methods in Molecular Biology 2022: 341-352 (2019). 

• Thomas R. Weikl, Jinglei Hu, Batuhan Kav, Bartosz Różycki. Binding and segregation of proteins in membrane adhesion: Theory, modelling, and simulations. In: "Multiresponsive Behavior of Biomembranes and Giant Vesicles", Reinhard Lipowsky (ed), Elsevier, San Diego, CA, USA. Advances in Biomembranes and Lipid Self-Assembly 30: 159-194 (2019). 

• Wolfgang Peti, Rebecca Page, Evzen Boura, Bartosz Różycki. Structures of dynamic protein complexes: Hybrid techniques to study MAP kinase complexes and the ESCRT system. In: "Protein NMR: Methods and Protocols", Ranajeet Ghose (ed), Springer, New York, NY, USA. Methods in Molecular Biology 1688: 375-389 (2018). 

Popular science papers in Polish 

• Bartosz Różycki. Konformacje białek wielodomenowych i częściowo nieustrukturyzowanych – symulacje i eksperymenty. Postępy Biochemii 63: 132-136 (2017).

• Bartosz Różycki. Postęp w pomiarach białek nieustrukturyzowanych. Wszechświat 117: 295-304 (2016).