Presentations
Oct, 2023: Panc Tank Mini-Retreat, Brenden-Colson Cencer for Pancreatic Care
Oct, 2023: QBI workshop on multiplex image analysis, La Jolla Institute for Immunology, San Diego
June, 2023: Deep Learning Affinity Group (DLAG), Fred Hutch Cancer Center
May, 2023: Knight Cancer Research Seminar Series
April, 2023: Basic & Translational Science Seminar Series, Knight Cancer Institute
Feb, 2023: Webinar CyTOF group France (virtual)
Sept, 2022: Quantitative Systems Biology community (Bytes and Bites)
April, 2021: M2CH-CSBC Workshop on Computational and Experimental Approaches to Study Tumor Heterogeneity
April, 2021: CSBC/PS-ON Image Analysis Working Group
Dec, 2020: "Single cell tracking based on Voronoi partition via stable matching", 59th IEEE Conference on Decision and Control (CDC)
June, 2020: "Seeing More with Deep Learning in Biomedical Imaging", OHSU-PSU Machine Learning for Health workshop
Feb, 2020: "RESTORE: Robust intEnSiTy nORmalization mEthod for multiplexed imaging", Knight Research Lecture Series
Nov, 2019: "RESTORE: Robust intEnSiTy nORmalization mEthod for multiplexed imaging", M2CH retreat, OHSU
Nov, 2019: "Lessons Learned & What’s next?", OCSSB Retreat
Oct, 2019: "TIME matters in pancreatic cancer", Pancreas Research Monthly Meeting, Breden-Colson Center
Sept, 2019: "RESTORE: Robust intEnSiTy nORmalization mEthod for multiplexed imaging", OMS Atlas/SMMART retreat, OHSU
Sept, 2019: "imaging and spatial biology", the Reactome group.
June, 2019: "Robust intensity normalization method for multiplexed imaging data” at HTAN F2F Meeting, The Broad Institute, June 25-26, 2019
April, 2019: "Seeing More with Deep Learning”, SWOG Breast Translational Medicine Working Group, San Francisco, April 26, 2019
Feb, 2019: "Variational Autoencoding Tissue Response to Microenvironment Perturbation" SPIE Medical Imaging Conference, San Diego, Feb 16-21
Sept, 2018: NCI workshop: "Interpretable Deep Learning for Cancer Research” on Sept 20-21 (agenda)
Sept, 2018: OHSU-Univ. of Oregon - Data Science Collaboration Discussion on Sept 11.
Sept, 2018: NCI site visit @ OHSU on Sept 6-7.
April, 2018: "A method for quantification of calponin expression in myoepithelial cells in immunohistochemical images of ductal carcinoma in situ", IEEE International Symposium on Biomedical Imaging (ISBI'18)
Feb, 2018: "SHIFT: Speedy Histopathological-to-ImmunoFluorescent Translation of whole slide images using conditional generative adversarial networks" SPIE Medical Imaging 2018
July, 2017: "Multiplexed Immunohistochemistry Image Analysis using Sparse Coding", "Deep Leaning based Nucleus Classification in Pancreas Histological Images" IEEE Engineering in Medicine and Biology Society (EMBC'17)
June, 2017: "Sparse coding-based image cytometry for multiplexed Immunohistochemistry" 32nd Congress of the International Society for Advancement of Cytometry (CYTO2017)
July, 2017: "Machine Learning in Biomedical Image Analysis" (Samsung Medical Center)
Aug, 2016: "Quantitative Analysis of Histological Tissue Image based on Cytological Profiles and Spatial Statistics" IEEE Engineering in Medicine and Biology Society
Dec, 2015: "Retrieving Common Dynamics of Gene Regulatory Network under Various Perturbations" IEEE Conf. on Decision and Control 2015
Oct, 2015: "Quantitative Image Analysis of cell-to-cell Heterogeneity" NCI-OHSU Cancer Heterogeneity Workshop
April 9, 2015: "Bridging the gap: Data and Modeling" Stanford Center for Systems Biology Weekly Meeting
April 1, 2015: "Bridging the gap: Data and Modeling" Oregon Health and Science University (Computational Biology)
Nov 9-14, 2014: "Reconstruction of Gene Regulatory Networks based on Repairing Sparse Low-rank Matrices," RECOMB/ISCB RSG 2014
June 24-27, 2014: "A Design of Neural Decoder by Reducing Discrepancy between Manual Control (MC) and Brain Control (BC)", "Reconstruction of Gene Regulatory Networks with Hidden Node", European Control Conference 2014, Strasbourg France
April 7, 2014: "Data-driven Graph Reconstruction using Compressive Sensing", Center for Systems and Synthetic Biology Meeting, UCSF
Dec 10-13, 2013: "Low-rank Representation of Neural Activity and Detection of Submovements", IEEE Conf. on Deicision and Control 2013, Florence, Italy
Dec 4, 2013: "Towards a Systems Understanding in Biology: Data and Modeling", KI Field Robotics, KAIST
Dec 2, 2013: "Towards a Systems Understanding in Biology: Data and Modeling", Dept. of Mechanical Engineering, UNIST
May 7, 2013: Dissertation Talk "Towards a Systems Understanding in Biology: Data and Modeling", Dept. of Mechanical Engineering, UC Berkeley
Dec 10-13, 2012: “Data-driven Graph Reconstruction using Compressive Sensing", IEEE Conf. on Decision and Control 2012, Maui, HI
Oct 17-19, 2012: "Modeling Response of Biological Signal Pathways using a Hybrid Boolean Framework", ASME/DSCC 2012, Fort Lauderdale, FL
Dec 12-15, 2011: "Inference of Temporally Evolving Network Dynamics with Applications in Biological Systems", IEEE Conf. on Deicision and Control 2011, Orlando, FL
June 29-July 1, 2011: "Optimization-based Inference for Temporally Evolving Boolean Networks with Applications in Biology", "Biologically-inspired Coordination of Multiple UAVs using Sliding Mode Control", American Control Conference 2011, San Francisco, CA
April 22, 2010 : Presented "Can human exoskeleton suit help paralyzed people to grasp and walk?," CITRIS Big Ideas Competition (Final top 10), UC Berkeley