Research Group

• • Postdoc and PhD student position are available

Zachary Sims (Research Software Engineer, from 2022 Aug)

• BS in Mathematics and Computer Science, University of Oregon

• Graduate Non-degree, Computer Science, Oregon Health and Science University

Robert Heussner (Research Software Engineer, from 2022 Sept)

• BS in Chemical Engineering, Oregon State University

Kunlun (Mark) Wang, MS (Computational Biologist, from 2023 May)

• BS in Biochemistry & Computer Science, University of Wisconsin-Madison

• MS in Bioengineering and Biomedical Engineering, Columbia University

Isis Diaz (Research Software Engineer, from April 2024)

• MS in  Bioinformatics and Genomics, Univ of Oregon

• BA in Nanotechnology Engineering, Tecnológico Nacional de México

Sandhya Govindarajan (Computational Biologist, from June 2024)

• MS in Bioinformatics, Georgia Institute of Technology

• BA, Biotechnology, SRM University

Eric Cramer (MD/PhD student) 

• BS in Biomedical Computation, School of Engineering, Stanford University

• MS in Biomedical Informatics, School of Medicine, Stanford University

Samuel Kim (MD/PhD student) - research rotation

• BA in Neuroscience, Washington University in St. Louis

• Research rotation (May 1 - June, 2024)

Keiko Tsuji (Neuroscience Graduate Program student)  

• Research roration (Mar 11 - May 3, 2024)

Lucas Pagano (BME PhD student, from 2021, co-mentoring with Drs. Thibault and Song)

• MS in Computer Science, Polytech Nantes

Walid Bousselham (BME PhD student, from 2021-2022, co-mentoring with Drs. Thibault and Song)

Prashant Gupta PhD (Postdoc, from 2022 Aug-Oct)

• Discrete Optimization, Computational Topology, AI, Data Visualization

Eun-Na Kim MD/PhD (Postdoc, from 2020 Oct - 2022 Sept)

• Pathologist 

• Project: CRUK-OHSU Joint Project & Digital pathology

• Current position: Pathologist, Seoul National University Hospital

Luke Strgar (Research Software Engineer, from 2021 Sept-2022 Aug)

• BS in Computer Science, UC Berkeley

• MS in Computer Science, University of Texas at Austin

• Current position: PhD student (Northwestern) 

Tina Ghodsi (BME PhD student, from 2018 Fall-Spring 2022, transferred to other Lab)

• Project: CEDAR Pilot (PI: Langer), CSBC-WCS project, CSBC-M2CH

Bipasa Bose (BME PhD student - withdrawal, from 2021 Summer - 2022 Spring)

• Project: Integrative single cell analyses of inflammation-derived circulating hybrid cells to identify aggressive disease

Dharani Thirumalaisamy (DMICE MS student, 2022 Spring term - research rotation)

Luke Ternes, PhD (PhD student, from 2018 Fall-2022 Mar)

• BA in Biomedical/Medical Engineering, Georgia Institute of Technology

• Project: HTAN, TNP-SARDANA/TMA, Knight Pilot, MicePan

  • • https://github.com/GelatinFrogs/MicePan-Segmentation

• Current position: Araceli Biosciences

Elliot Gray, MS (Master student, 2017 June-2021 Sep)

• BS in Mathematics and Physics, Montana State Unversity-Bozeman

• Project: Brenden-Colson Center (Pancreatic Care's pilot)

• Current position: hti.ai (developing ML tools for cryo-EM applications)

Erik Burlingame, PhD (PhD student, 2018 Jan-2021 Sep) 

• BA in Biochemistry, University of Oregon

• MS in Applied Bioinformatics and Genomics, University of Oregon

• ARCS Scholars 

• CompBio Intern 2017 (Univ. of Oregon)

  • https://eburling.gitlab.io/

• Project: HTAN, TNP-SARDANA/TMA, Knight Pilot, OCTRI BIP

• Current position: Indica Lab -> Johnson & Johnson

Geoffrey Schau, PhD (PhD student, 2018 Jan-2020 Dec)

• BS in Biomedical Engineering, Rose-Hulman Institute of Technology

  • https://schaugf.github.io/

• Project: NEMO, M2CH Project, CSBC-WCS project, OCTRI BIP, CEDAR Pilot (PI: Eksi)

• Current position: 

  • (now) Senior Machine Learning Scientist at Tempus Labs

  • Associate Scientist, Digital Pathology & Artificial Intelligence oncology Biomarker Discovery Group @ Genentech 

Vahid Azimi (2015-2016, MD student @ OHSU)

• BA in Neuroscience, Johns Hopkins University

• MS in Cellular and Molecular Medicine, University of Arizona

• current - Pathology & Immunology, Washington University School of Medicine in St. Louis

Owen Madin (2016 Summer, co-mentoring @OSU)

• BA in Chemical Engineering, Mathematics, Oregon State University

• now PhD student ‎@University of Colorado Boulder

James Haddad (Univ. of Pittsburgh)

• CSBC/PS-ON Summer Undergraduate Research Program (2018 summer, co-mentors: Drs. Gray and Chang)

Cole Meyer (2016 Summer, co-mentoring @OSU)