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A site of software resources. -since C.E.2009-
If you want to access to a past information before Nov 2, 2020 then you can access to following archive.
http://web.archive.org/web/20201102001521/https://sites.google.com/site/kashiwagiakihiro/
1.LCS with GUI - 2014/6/24 21:21 updated
3.Jazz Music by MagicGarageBand
-Holy Scriptures Bible
4.How to effective use The Watch Tower Library
5.How to make card of the bible text
7.A Note of "Flavius Josephus's Books of the History of the Jewish War against the Romans."
8.LCS(Longest Common Subsequence) of Dynamic Programming No.1
10.Coin Probability Graph - Coffee break -
12.Extract ORF
13.Confirm the extracted sequence No.1
14.Confirm the extracted sequence No.2
15.Calculate probability to amino acid in gene
16.Fine adjustment for a program - Coffee break -
17.Confirm the extracted sequence No.3
18.LCS(Longest Common Subsequence) of Dynamic Programming No.2
19.Reverse sequence of nucleotide and integration in the past programs - Coffee break -
20.Local alignment and affine gap penalty
21.Verification to abstracted ORF No.1
22.Verification to abstracted ORF No.2
25.A problem of find motif by tree structure
26.LCS with GUI - 2014/6/24 21:21 updated
28.A explanation for the butterfly operation of FFT - Coffee break
29.Confirm the extracted sequence No.3
30.About a speedup the finding motif probrem by the CUDA
31.A Multi threading for LCS of Dynamic Programming
32.How to compare a transition probability of HMM
33.The six phases Deep Neural Network
34.About how to calculate Back propagation
35.About how to calculate Restricted Boltzmann Machine
36.DNA Recognizer by using Neural Network - Block and Flow chart
37.Gene prediction by using Neural Network
38.An Introduction to Backpropagation with GPU
-Motif of Mycoplasma Genitalium - 2020/10/24 Update!
41.lmer 9 frequencies 100 of mapping on GeneMarkHMM 26m
-Files of docking Simulation of RNA Polymerase of SARS Corona Virus2 and Ivermectin - 2022/4/28 New !
-A docking Simulation of Papain-Like Protease of SARS Corona Virus2 (6w9c) and Ivermectin (ivm) - 2020/6/10
51.Simulation 1. movie pse for pymol 2020.5.21
52.Simulation 2. movie pse for pymol 2020.5.26
53.Simulation 3. movie pse for pymol 2020.5.26
-A docking Simulation of RNA Polymerase of SARS Corona Virus2 (7bzf) and Ivermectin (ivm) - 2020/6/20
54.Ligand Ivermectin(IVM) pdbqt for Autodoc Vina 2020.6.14
55.Rigid RNA Polymerase(7bzf chain A) pdbqt for Autodoc Vina 2020.6.11
56.Flex RNA Polymerase(7bzf chain A) pdbqt for Autodoc Vina 2020.6.11
57.Autodoc Vina Input File 2020.6.11
58.Simulation 1. movie pse for pymol Output File Log 2020.6.11
59.Simulation 2. movie pse for pymol Output File Log 2020.6.14
60.Simulation 3. movie pse for pymol Output File Log 2020.6.15 a
61.Simulation 4. movie pse for pymol Output File Log 2020.6.15 b
62.Simulation 5. movie pse for pymol Output File Log 2020.6.15 c
63.Simulation 6. movie pse for pymol Output File Log 2020.6.15 d
64.Simulation 7. movie pse for pymol Output File Log 2020.6.15 e
65.Simulation 8. movie pse for pymol Output File Log 2020.6.16 a
66.Simulation 9. movie pse for pymol Output File Log 2020.6.16 b
67.Simulation 10. movie pse for pymol Output File Log 2020.6.16 c
68.Simulation 11. movie pse for pymol Output File Log 2020.6.17 a
-High Score Result about docking simulation of RNA Polymerase of SARS Corona Virus2 (7bzf) and Ivermectin (ivm) - 2020/8/30
69.Ligand Ivermectin(IVM) pdbqt for Autodoc Vina 2020.6.14
70.Rigid RNA Polymerase(7bzf chain A) pdbqt for Autodoc Vina 2020.8.13
71.Flex RNA Polymerase(7bzf chain A) pdbqt for Autodoc Vina 2020.8.13
72.Autodoc Vina Input File 2020.8.13
73.Simulation. movie pse for pymol Output File Log 2020.8.20 New! - This is high score result -11.5[kcal/mol]
74.Simulation. movie pse for pymol Output File Log 2020.8.20a
75.Simulation. movie pse for pymol Output File Log 2020.8.23
-GitHub repository
https://github.com/a-kashiwagi/bioinformatics-tools
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Copyright© Akihiro Kashiwagi 柏木明博 全件留保
High Score Result -11.5[kcal/mol] about docking simulation of RNA Polymerase of SARS Corona Virus2 (7bzf) and Ivermectin (ivm)