Changelog

Nov 30, 2009: Jar files of jPopGen Suite v0.5 released.

Dec 1, 2009: Jar files of jPopGen Suite v0.51 released. Readme file added. Some small change on the "Neutrality Test Options" dialog. A bug in estimating crude sequencing error rate with modified Zeng's estimator is fixed.

Dec 2, 2009: Jar files of jPopGen Suite v0.52 released. Simulation library added.

Dec 11, 2009: Jar files of jPopGen Suite v0.6 released. Added three theta estimators (modified Tajima's estimator, modified Watterson's estimator and modified Zeng et al.'s estimator) and one neutrality test (contrasting two different theta estimators). Fixed a bug of previous version (wrong p-value calculation for Y, Y*, D and D*).

Dec 12, 2009: Jar files of jPopGen Suite v1.0b1 released. Added the ability to contrast three pairs of theta estimators simultaneously with simulation.

June 11, 2010: Jar files of jPopGen Suite v1.0b2 released. Added Fu and Li's F and F* tests. A bug is fixed when calculating Y and Y* (thanks, Dr. Abigail V. Harter). However, as pointed out by Achaz (2009), the original calculation of Y and Y* (Achaz 2008) need to be corrected. Please wait for the next version of jPopGen Suite for corrected Y and Y*.

July 17, 2010: Jar files of jPopGen Suite v1.0b3 released. The normalizations of Achaz (2008)'s Y and Y* have been corrected. I'd like to thank Dr. Guillaume Achaz for his kindly help.

Feb 25, 2011: Jar files of jPopGen Suite v1.0b4 released. Added features of inferring confidence intervals for theta estimations and MCLEs.

Nov 24, 2011: Jar files of jPopGen Suite v1.0b5 released. Added command line interface of jPopGen Suite.

Jan 19, 2012: Jar files of jPopGen Suite v1.0b6 released. jpopgen_format_conversion has been integrated into this version. Now jPopGen Suite support Phylip, ALN(ClustalW2) and FASTA as input file formats.

Feb 24, 2012: Jar files of jPopGen Suite v1.0b7 released. Added command line interface support for “Data” section in a parameter file.