Journal Papers

26. Bae, J., Lee, D., Park, C., Huh, M., Kang, S., Gwak, Y.J., Lee, H.J., Jung, Y.-J., Yoon, H., Hur, M., Jin, S., Cho, S., Cho. B.-K., (2025) Multi-omics analysis reveals genetic basis for rapid CO2 utilization in Sporomusa sphaeroides KIAC, mSystems, 10(9)

25. Jin, S., Ganesh I., Bae, J., Lee, D., Kang, S., Lee, H., Lee, J., Cho, B.K., (2025) Metabolic engineering of acetogenic bacteria using CO gas-sensing transcriptional ON/OFF modules, Metabolic Engineering, 91,290-301

24. Bae, J., Park, C., Jung, H., Jin, S., Cho, B.K., (2024) Harnessing acetogenic bacteria for one-carbon valorization toward sustainable chemical production, RSC Chemical Biology, 5, 812-832

23. Shin, J., Bae, J., Lee, H., Kang, S., Jin, S., Song, Y., Cho, S., Cho, B.K., (2023) Genome-wide CRISPRi screen identifies enhanced autolithotrophic phenotypes in acetogenic bacterium Eubacterium limosum, Proceedings of the National Academy of Sciences of the United States of America, 120(6)

22. Bae, J.†, Jin, S.†, Kang, S., Cho, B.K., Oh, M., (2022) Recent progress in the engineering of C1-utilizing microbes, Current Opinion in Biotechnology, 78, 102836

21. Jin, S.†, Kang, S.†, Bae, J., Lee, H., Cho, B.K., (2022) Development of CO gas conversion system using high CO tolerance biocatalyst, Chemical Engineering Journal, 449(1), 137678

20. Lee, H.†, Bae, J.†, Jin, S.†, Kang, S., Cho, B.K., (2022) Engineering Acetogenic Bacteria for Efficient One-Carbon Utilization, Frontiers in Microbiology, 13:865168

19. Song, Y., Bae, J., Shin, J., Jin, S., Kang, S., Lee, H., Cho, S., Cho, B.K., (2022) Systems Biology on Acetogenic Bacteria for Utilizing C1 Feedstocks. In: Zeng, AP., Claassens, N.J. (eds) One-Carbon Feedstocks for Sustainable Bioproduction. Advances in Biochemical Engineering/Biotechnology, vol 180. Springer, Cham, pp 57-90

18. Song, Y., Bae, J., Jin, S., Lee, H., Kang, S., Lee, J., Shin, J., Cho, S., Cho, B.K., (2022) Development of highly characterized genetic bioparts for efficient gene expression in CO2 fixing Eubacterium limosum, Metabolic Engineering, 72, 215-226

17. Cho, S., Cho, S.H., Ko, S.R., Jeong, Y., Lee, E., Jin, S., Jeong, B.S., Oh, B.H., Ahn, C.Y., Cho, B.K., (2021), Elucidation of the algicidal mechanism of the marine bacterium Pseudoruegeria sp. M32A2M against the harmful alga Alexandrium catenella based on time-course transcriptome analysis, Fronters in Marine Science,

16. Bae, J., Song, Y., Lee, H., Shin, J., Jin, S., Kang, S., Cho, B.K., (2021), Valorization of C1 gases to value-added chemicals using acetogneic biocatalysts, Chemical Engineering Journal, 428:131325

15. Shin, J., Song, Y., Kang, S., Jin, S., Lee, J.K., Kim, D.R., Cho, S., Cho, B.K., (2021), Genome-scale analysis of Acetobacterium woodii identifies translational regulation of acetogenesis, mSystems, 6(4):

14. Jin, S., Jeon, Y., Jeon, M.S., Shin, J., Song, Y., Kang, S., Bae, J., Cho, S., Lee, J.K., Kim, D.R., Cho, B.K. (2021) Acetogenic bacteria utilize light-driven electrons as an energy source for autotrophic growth, Proceedings of the National Academy of Sciences of the United States of America, 118(8)

13. Song Y., Bae, J., Shin, J., Jin, S., Lee, J.K., Kim, S.C., Cho, S., Cho, B.K. (2021) Transcriptome and translatome of CO2 fixing acetogens under heterotrophic and autotrophic conditions, Scientific Data, 8:51

12. Jin, S.†, Bae, J.†, Song, Y., Pearcy, N., Shin, J., Kang S., Minton, P.N., Soucaille, P., Cho, B.K. (2020) Synthetic Biology on Acetogenic Bacteria for Highly Efficient Conversion of C1 Gases to Biochemicals, International Journal of Molecular Sciences, 21(20), 7639

11. Song, Y., Lee, J.S., Shin, J., Lee G.M., Jin, S., Kang, S., Lee, J.K., Kim, D.R., Lee E.Y., Kim, S.C., Cho, S., Kim, D., and Cho, B.K. (2020) Functional cooperation of the glycine synthase-reductase and Wood–Ljungdahl pathways for autotrophic growth of Clostridium drakei, Proceedings of the National Academy of Sciences of the United States of America, 117, 13, 7516-7523

10. Kang, S., Song, Y., Jin, S., Shin, J., Bae, J., Kim D.R., Lee, J.K., Kim, S.C., Cho, S., Cho, B.K. (2020) Adaptive Laboratory Evolution of Eubacterium limosum ATCC 8486 on Carbon Monoxide, Frontiers in Microbiology, 11:402

9. Jeon, Y., Jeon, M.S., Shin, J., Jin, S., Yi, J., Kang, S., Kim, S.C., Cho, B.K., Lee, J.K., and Kim D.R. (2020) 3D Printed Bioresponsive Devices with Selective Permeability Inspired by Eggshell Membrane for Effective Biochemical Conversion, ACS Applied Materials & Interfaces, 12, 27, 30112-30119

8. Cho, S.H., Lee, E., Ko, S.R., Jin, S., Song, Y., Ahn, C.Y., Oh, H.M., Cho, B.K., and Cho, S. (2020) Elucidation of the Biosynthetic Pathway of Vitamin B Groups and Potential Secondary Metabolite Gene Clusters Via Genome Analysis of a Marine Bacterium Pseudoruegeria sp. M32A2M, Journal of Microbiology and Biotechnology, 30(4): 505-514

7. Shin, J., Kang, S., Song, Y., Jin, S., Lee, J., Lee, J.K., Kim, D.R., Kim, S.C., Cho, S., and Cho, B.K. (2019) Genome engineering of Eubacterium limosum using expanded genetic tools and CRISPR-Cas9 system, ACS Synthetic Biology, 8, 9, 2059-2068

6. Song, Y., Shin, J., Jin, S., Lee, J.K., Kim, D.R., Kim, S.C., Cho, S., and Cho, B.K. (2018) Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth, BMC genomics, 19:837

5. Shin, J., Song, Y., Jin, S., Lee, J.K., Kim, D.R., Kim, S.C., Cho, S., and Cho, B.K. (2018) Genome-scale analysis of Acetobacterium bakii reveals the cold adaptation of psychrotolerant acetogen, RNA, 2018. 24: 1839-1855.

4. Jeon, M.S., Jeon, Y., Hwang, J.H., Heu, C.S., Jin, S., Shin, J., Song, Y., Kim, S.C.,Cho, B.K., Lee, J.K., and Kim, D.R. (2018) Fabrication of Three-Dimensional Porous Carbon Scaffolds with Tunable Pore Sizes for Effective Cell Confinement, Carbon, 130:814-821

3. Song, Y., Shin, J., Jeong, Y., Jin, S., Lee, J.K., Kim, D.R., Kim, S.C., Cho, S, and Cho, B.K. (2017) Determination of the Genome and Primary Transcriptome of Syngas Fermenting Eubacterium limosum ATCC 8486. Scientific Reports, 7:13694.

2. Shin, J., Song, Y., Jin, S., Cho, S., and Cho, B.K. (2016). Microbial conversion of carbon dioxide to electrofuels., Handbook of Hydrocarbon and Lipid Microbiology Series. Consequences of Microbial Interactions with Hydrocarbons, Oils and Lipids: Production of Fuels and Chemicals, ed Lee, S.Y., pp 1-16.

1. Song, W.Y., Lee, H.S., Jin, S., Ko, D., Martinoia E., Lee, Y., An, G., and Ahn, S.N. (2015) Rice PCR1 influences grain weight and Zn accumulation in grains. Plant Cell Environments. 38(11):2327-2339