Figure 1. Contaminated Algae Pelleted onto a Membrane
Phenotypic Response: Scenedesmus A6 was selected as the reporter cell for its rapid physiological responses to toxins. The cells are first inoculated with an environmental water sample for ~60 minutes. The cells will then change their phenotype in response to the treatment.
Syringe Filter: After inoculation, the sample and cells are placed in a syringe with a modular filter attachment, and pelleted through a 45 micron membrane. The filter is then removed and dried.
Holder Attachment: The dried cell pellet is placed onto the internal platform of the 3D modelled and printed pellet holder. The holder blocks outside light from entering, providing optimal conditions for a high-quality Raman scan. The holder includes a screw mechanism to raise the platform, adjusting the platform height and in turn the resolution of the scan. Magnets are incorporated into the design, which aid in attachment to the handheld Raman spectrometer.
Handheld Raman Spectrometer: This device is a small, portable version of a typical Raman spectrometer manufactured by Wasatch Photonics. A laser is shot at the sample, and the device identifies differences in wavelength and intensity based on chemical composition- resulting in a distinct Raman spectra for each sample scanned.
A library was created, containing spectra of various common waterborne toxins at different concentrations. The library includes spectra of algae inoculated with toxins such as ammonium sulfate, cobalt chloride, and copper sulfate, ranging in concentrations from 0.1mM to 250mM.
Figure 2.
Cobalt chloride was one toxin type that the algae cells were inoculated with. Cobalt is a heavy metal that enters waterways through the weathering of soil and rock formations. Therefore, it is a toxin which may be found near industrial mining operations. This adds an additional stakeholder: industrial mining companies that must monitor cobalt contributions to waterways to satisfy legal regulations (ATSDR 2022).
Figure 2. displays one replicate of spectra that resulted after scanning pelleted algae cells that were inoculated with varying concentrations (0-250mM) of cobalt chloride for 60 minutes. There are some visible changes between the spectra of different samples, but it is difficult to interpret if the differences are due to toxin response or other factors such as resolution or pellet size. Two other experiments ran included inoculation of algae with the same concentration values, but for 6 hours and 24 hours.
Figure 3.
The same concentration range was tested for ammonium sulfate as was tested for cobalt chloride. The experiments also included scans for 6-hour and 24-hour inoculation periods. The spectra in Figure. 2 and Figure 3. both include the normalized wavelength intensities, as produced by a normalization code developed in MATLAB by the Senger Lab. This technique is applied to remove the overbearing effect of fluorescent signal on interpretation of the Raman signal. An overbearing fluorescent signal occurs when a molecule contains wavelengths matching those of the laser.
Chemometric Modelling
Figure 4.
PCA is a chemometric modelling tool which detects areas of large variance in spectra between samples and groups them accordingly. Typically PC1 is the variable representing spectral range with the most dramatic difference, with PC2 and PC3 following. The PCA plot shown in Figure 4. highlights two areas of clustering representing two distinct phenotypes picked up by Raman spectroscopy in the same experiment depicted by the spectra in figure #.
Unfortunately, the spectra from the other experiments were ran through a PCA model and did not exhibit the same degree of clustering. Therefore, the group decided to run the spectra and PCA through more advanced chemometric models
Multivariate Analysis of Variance (MANOVA) Modelling
Figure 5. MANOVA cluster analysis for ammonium sulfate, cobalt chloride, copper sulfate, and control treatment groups
The goal of this modelling technique was to see if samples could be separated by treatment group. Figure 5. shows the MANOVA cluster analysis developed from all spectra taken from algae inoculated with a >1mM concentration of toxin- either ammonium sulfate, cobalt chloride, or copper sulfate. Although overlap was observed in the center, significant clustering among treatment groups was observed.
Additionally, there is an interesting trend visible as you move from the left to the right side of the graph that may correlate with increasing toxicity of the treatments to the algae. Ammonium sulfate promotes cell growth, copper sulfate is slightly toxic to the cells, and cobalt chloride is the most toxic to the cells. It is important to note that less scans were performed on copper sulfate inoculated algae than the other two treatment groups.
Partial least squares regression modelling was applied to the spectra to determine whether samples could be separated by concentration of each toxin. The y-axis represents the predicted value of the concentration of a toxin given the existing spectra in our built library. The x-axis represents the natural log of the actual concentration of the toxin present in the sample. Each treatment (ex. Cobalt chloride shown in Figure 6.) will have its own PLSR model that can ideally be used to predict the concentration of the toxin in the water sample.
Partial Least Squares Regression (PLSR)
Figure 6. PLSR Model of Two Cobalt Chloride Incubation Cohorts
Figure 7. Ammonium sulfate 24-hour incubation PLSR
The model provides a stronger prediction of concentration after the algae has been inoculated for 24 hours in constrast to only 60 minutes. The PLSR model for the ammonium sulfate 24-hour treatment group is shown in Figure 7.
The physical prototype consists of an attachment that connects to the handheld spectrophotometer. The attachment acts as a holding chamber for the algal cell pellet after it is inoculated, allowing the spectrometer to produce high quality spectra. Features of this solution include:
Magnets: The handheld spectrophotometer requires magnetism between the holder and device to fire laser.
Adjustment platform: A screw allows the user to adjust the focal length- the distance between the laser source and the cell pellet. This characteristic ensures a high quality Raman signal.
Closed chamber: The dark aluminum and completely closed chamber prevents light from entering the sample site and affecting the signal.
Figure 8. Holder Prototype Attached to Spectrometer
Figure 9. Internal View of Prototype in SOLIDWORKS
Economic Evaluation
Figure 10. Cost Estimate for Biosensor
We compared the commercial costs of some individual chemical detection tests that can be done on water samples to the cost of running a test using our solution, which will scan for all toxins in our spectral library. The initial cost for the handheld spectrometer and 3D printed attachment would be about $2010, but each additional scan would cost only about $12, with a majority of that price stemming from the cost of the algae culture- which can be easily grown by a consumer who is using this solution consistantly.