YURI CHOI, Ph.D.
Curriculum vitae
YURI CHOI, Ph.D.
Curriculum vitae
(Last update: 2022-11-09)
Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST)
⛳ 291, Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea
✉ choiyuri33@kaist.ac.kr
📞 82+ 42-350-2685
🔎 Molecular breeding | Postharvest | Physiology of horticultural crops
🎓 Sep. 2018 – Feb. 2025 |
Integrated M.S. and Ph.D. Course in Biological Sciences
Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST; Daejeon, Republic of Korea)
*Dissertation: Identification of flower opening regulator controlled by the circadian clock
*Advisor: Prof. Sang-Gyu Kim
🎓 Mar. 2015 – Aug. 2018 |
B.S. in Horticultural Science
Department of Horticulture, College of Agriculture and Life Science, Chungnam National University (CNU; Daejeon, Republic of Korea)
- Early Graduation of Excellence
2025
Moonyoung Kang, Yuri Choi, Hyeonjin Kim, Min-Soo Choi, Seula Lee, Youbong Hyun*, and Sang-Gyu Kim*. (2025). Loss-of-function variants of CYP706A3 in two natural accessions of Arabidopsis thaliana increase floral sesquiterpene emission. BMC Plant Biology,
2023
Hyeonjin Kim, Youngbin Oh, Eunae Park, Moonyoung Kang, Yuri Choi, and Sang-Gyu Kim. (2023). Heritable virus-induced genome editing (VIGE) in Nicotiana attenuata. In Sangsu Bae & Beomjong Song, Base Editors: Methods and Protocol, 2606:203-208. Humana, New York, NY. (abstract)
2022
Seung Yong Shin, Yuri Choi, Sang-Gyu Kim, Su-Jin Park, Ji-Sun Park, Ki-Beom Moon, Hyun-Soon Kim, Jae Heung Jeon, Hye Sun Cho, and Hyo-Jun Lee (2022) Submergence promotes auxin-induced callus formation through ethylene-mediated post-transcriptional control of auxin receptors. Molecular Plant, 15, 1–15. (abstract)
Moonyoung Kang, Yuri Choi, Hyeonjin Kim, and Sang-Gyu Kim (2022) Single-cell RNA-sequencing of Nicotiana attenuata corolla cells reveals the biosynthetic pathway of a floral scent. New Phytologist 234:527–544. (abstract) - Posted in Plantae.
2021
Soyoung Yi*, Janajeevan Rameneni*, Myungjin Lee, Seulgi Song, Yuri Choi, Lu Lu, Hyeokgeun Lee, and Yongpyo Lim (2021) Comparative transcriptome-based mining of senescence-related MADS, NAC, and WRKY transcription factors in the rapid-senescence line DLS-91 of Brassica rapa. International Journal of Molecular Sciences 22(11), 6017. (abstract)
⇒ Estimated chlorophyll content for plant material selection
1. S
Nov. 2024 | Excellent Poster Award, International Conference of Korean Society of Plant Biologists (KSPB)
Mar. 2020 | Grand Prize, Lab Note Contest Hosted by Samsung Bioepis co., Ltd. ($ 2,000)
Mar. 2019 | Excellence Prize, Lab Note Contest Hosted by Samsung Bioepis co., Ltd. ($ 1,500)
Mar. 2017 – Aug. 2018 | Full-ride, National Excellence Scholarship (Natural Sciences and Engineering), Korea Student Aid Foundation (KOSAF) - 2 years
May, 2017 | Outstanding Undergraduate Awards, Korean Society for Horticultural Science (KSHS)
May, 2016 | Monsanto Korea Scholarship, Monsanto Korea Inc. ($ 1,000)
</> NGS
RNA sequencing: data QC, DEG, clustering, GO term enrichment, and time-series data analysis (Trinity, Trimmomatic, Cutadapt, FastQC, STAR, HISAT2, RSEM, Kallisto, Cufflinks, Stringtie, edgeR, ClueGO, STEM)
Library construction for whole-genome sequencing (WGS): long-read sequencing based on the Oxford Nanopore platform, ONT
✂ Gene editing
CRISPR binary vector cloning and plant tissue culture in wild tobacco (Nicotiana attenuata)
Heritable virus-induced gene editing (VIGE)
Illumina-based amplicon deep sequencing (targeted deep sequencing) for editing efficacy
🧬 Molecular biology
PCR, RT-qPCR, cloning - ligation, gibson, golden gate assembly
In situ hybridization (ISH)
Western blot
Yeast two-hybrid (Y2H, 예정)
Protoplast and nuclei isolation for FACs
Promoter binding assay (예정)
Virus-induced gene silencing (VIGS) in wild tobacco (N. attenuata)
📊 Metabolite analysis
GC-MS (Q) Primary metabolites derivatization, Headspace volatile analysis via PDMS, Analyzing the internal pool of floral volatiles
LC-MS (예정) Hormone analysis - JA, IAA, ABA
Chlorophyll quantification
Starch quantification
🔬 Histology
Paraffin embedding and section using microtome, cryotome - flower and leaf of wild tobacco (Nicotiana attenuata), Arabidopsis thaliana, and morning glory (Ipomoea purpurea)
Imaging by slide scanner and confocal microscopy
Feb, 2025 | Young scientist talk (15 min), Title: Identification of flower opening regulators under circadian clock control, @The 4th MSL Symposium
Nov, 2024 | Oral (15 min), Title: Identification of flower opening regulators controlled by circadian clock, @Graduate Seminar, KAIST
Nov, 2024 | Flash talk (4 min) & Poster, Title: Identification of flower opening regulators controlled by circadian clock, @International Conference, Korean Society of Plant Biologists (KSPB)
Aug, 2024 | Poster, Title: The molecular mechanism underlying the Linneaus's flower clock, @The 100th international Plant Biology Conference, American Society of Plant Biologists (ASPB)
Feb, 2024 | 2 min talk, @The 3rd MSL Symposium
Feb, 2023 | 2 min talk, @The 2nd MSL Symposium
May, 2019 | Poster, Title: The molecular mechanism underlying the Linneaus flower clock, @Plants in Daejeon (PiD)
Feb, 2019 | 2 min talk, @The 1st MSL Symposium
🥼 Sep. 2018 – present |
Research Assistant, Department of Biological Sciences, KAIST (Daejeon, Republic of Korea)
*Laboratory for Ecology (Advisor: Prof. Sang-Gyu Kim)
*Proj. Flower opening: How do plants with conserved circadian clock bloom at different times?
- Analyzed the time-series RNA sequencing data and primary metabolite data
*Proj. Flower longevity: How to improve the longevity of flowers?
- Conducted the whole-genome sequencing by Nanopore, Generated the knock-out line
🥼 Mar. 2017 – Feb. 2018 |
Undergraduate Research Assistant, Department of Horticulture, Chungnam National University (Daejeon, Republic of Korea)
*Molecular Genetics and Genomics Laboratory (Advisors: Prof. Yong Pyo Lim, Dr. Soyoung Yi)
*Proj. Leaf senescence: What is the molecular mechanism of dark-induced leaf senescence?
- Estimated the chlorophyll content for plant material selection
June, 2017 | Visiting Student, Plant Systems Engineering Research Center, Korea Research Institute of Bioscience & Biotechnology (KRIBB; Daejeon, Republic of Korea)
Aug. 2016 | Visiting Student, Education Training Program of Academy of Korea Agriculture (Netherlands & Belgium)
Mar. – Dec. 2022 | Korea Science Academy (KSA; gifted high school) Research & Education (R&E) program, Teaching Assistant, KAIST
Sep. 2021 – Feb. 2022 | General Biology, Teaching Assistant, KAIST
Mar. – Aug. 2021 | Scientific Writing in English, Teaching Assistant, KAIST
Jan. – June, 2021 | Undergraduate Research Program (URP), Teaching Assistant, KAIST
Jul. – Aug. 2019 | Sejong Academy of Science and Arts (SASA; gifted high school), Teaching Assistant, KAIST
Mar. – Aug. 2019 | General Biology, Teaching Assistant, KAIST
Jan. 2019 | Sejong Academy of Science and Arts (SASA; gifted high school), Teaching Assistant, KAIST
Prof. Sang-Gyu Kim | Laboratory for Molecular Ecology
Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST)
⛳ 291, Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea
✉ sgkim1@kaist.ac.kr
📞 82+ 42-350-2645
Relationship: Dissertation Advisor